More than 300 homologs were found in PanDaTox collection
for query gene Phep_0174 on replicon NC_013061
Organism: Pedobacter heparinus DSM 2366



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_013061  Phep_0174  response regulator receiver  100 
 
 		 130 aa  262  1e-69  Pedobacter heparinus DSM 2366  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013061  Phep_2657  response regulator receiver  41.53 
 
 		 121 aa  97.1  8e-20  Pedobacter heparinus DSM 2366  Bacteria  normal  0.970877  normal  0.494085 
 
 
-
 
NC_012918  GM21_0758  response regulator receiver protein  34.71 
 
 		 132 aa  95.1  3e-19  Geobacter sp. M21  Bacteria  n/a    normal  0.0540632 
 
 
-
 
NC_011146  Gbem_0743  response regulator receiver protein  36.75 
 
 		 132 aa  95.1  3e-19  Geobacter bemidjiensis Bem  Bacteria  normal  1  n/a   
 
 
-
 
NC_007517  Gmet_2308  response regulator receiver protein  35.25 
 
 		 123 aa  88.6  3e-17  Geobacter metallireducens GS-15  Bacteria  normal  1  normal  1 
 
 
-
 
NC_002939  GSU2219  response regulator  36.67 
 
 		 123 aa  88.2  4e-17  Geobacter sulfurreducens PCA  Bacteria  normal  1  n/a   
 
 
-
 
NC_009483  Gura_3143  response regulator receiver protein  37.29 
 
 		 124 aa  88.2  4e-17  Geobacter uraniireducens Rf4  Bacteria  normal  1  n/a   
 
 
-
 
NC_007413  Ava_1562  response regulator receiver Signal transduction histidine kinase  33.62 
 
 		 369 aa  84.3  5e-16  Anabaena variabilis ATCC 29413  Bacteria  normal  0.847548  normal  0.236297 
 
 
-
 
NC_013061  Phep_0793  response regulator receiver  36.84 
 
 		 120 aa  81.3  0.000000000000004  Pedobacter heparinus DSM 2366  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007802  Jann_2695  response regulator receiver domain-containing protein  34.75 
 
 		 186 aa  81.6  0.000000000000004  Jannaschia sp. CCS1  Bacteria  decreased coverage  0.00269866  normal  0.78823 
 
 
-
 
NC_011884  Cyan7425_4410  response regulator receiver protein  33.33 
 
 		 131 aa  81.3  0.000000000000004  Cyanothece sp. PCC 7425  Bacteria  normal  1  normal  0.686937 
 
 
-
 
NC_014248  Aazo_0932  response regulator receiver sensor signal transduction histidine kinase  32.76 
 
 		 374 aa  79  0.00000000000002  'Nostoc azollae' 0708  Bacteria  normal  1  n/a   
 
 
-
 
NC_011831  Cagg_1858  two component transcriptional regulator, winged helix family  37.07 
 
 		 227 aa  79  0.00000000000002  Chloroflexus aggregans DSM 9485  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007796  Mhun_2749  response regulator receiver domain-containing protein  30.53 
 
 		 436 aa  77.4  0.00000000000006  Methanospirillum hungatei JF-1  Archaea  normal  1  normal  1 
 
 
-
 
NC_007498  Pcar_1409  two component signal transduction response regulator  33.06 
 
 		 123 aa  77  0.00000000000007  Pelobacter carbinolicus DSM 2380  Bacteria  hitchhiker  0.00000120114  n/a   
 
 
-
 
NC_013061  Phep_3508  response regulator receiver  36.13 
 
 		 119 aa  77  0.00000000000008  Pedobacter heparinus DSM 2366  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009952  Dshi_1406  response regulator receiver protein  35.09 
 
 		 121 aa  77  0.00000000000008  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.0894387  normal  1 
 
 
-
 
NC_009485  BBta_1991  two component transcriptional regulator  30.77 
 
 		 235 aa  76.6  0.00000000000009  Bradyrhizobium sp. BTAi1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008262  CPR_0609  DNA-binding response regulator  34.92 
 
 		 231 aa  77  0.00000000000009  Clostridium perfringens SM101  Bacteria  hitchhiker  0.0000282114  n/a   
 
 
-
 
NC_011662  Tmz1t_2649  response regulator receiver protein  30.51 
 
 		 122 aa  76.6  0.00000000000009  Thauera sp. MZ1T  Bacteria  normal  0.857048  n/a   
 
 
-
 
NC_014148  Plim_2544  DNA binding domain protein, excisionase family  32.77 
 
 		 264 aa  76.6  0.0000000000001  Planctomyces limnophilus DSM 3776  Bacteria  normal  0.0361834  n/a   
 
 
-
 
NC_011661  Dtur_1237  two component transcriptional regulator, winged helix family  37.29 
 
 		 232 aa  76.3  0.0000000000001  Dictyoglomus turgidum DSM 6724  Bacteria  normal  1  n/a   
 
 
-
 
NC_013061  Phep_3340  response regulator receiver  32.48 
 
 		 131 aa  76.3  0.0000000000001  Pedobacter heparinus DSM 2366  Bacteria  normal  1  normal  0.269643 
 
 
-
 
NC_008148  Rxyl_0783  two component transcriptional regulator  34.75 
 
 		 231 aa  76.6  0.0000000000001  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  1  n/a   
 
 
-
 
NC_008261  CPF_0623  DNA-binding response regulator  36.36 
 
 		 231 aa  76.3  0.0000000000001  Clostridium perfringens ATCC 13124  Bacteria  hitchhiker  0.000212568  n/a   
 
 
-
 
NC_011004  Rpal_5261  two component transcriptional regulator, winged helix family  31.62 
 
 		 237 aa  76.6  0.0000000000001  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.909356  n/a   
 
 
-
 
NC_011004  Rpal_4456  PAS/PAC sensor hybrid histidine kinase  33.62 
 
 		 1415 aa  76.3  0.0000000000001  Rhodopseudomonas palustris TIE-1  Bacteria  normal  1  n/a   
 
 
-
 
NC_009012  Cthe_1600  two component transcriptional regulator  33.62 
 
 		 224 aa  76.3  0.0000000000001  Clostridium thermocellum ATCC 27405  Bacteria  hitchhiker  0.000237714  n/a   
 
 
-
 
NC_009972  Haur_2997  response regulator receiver protein  31.9 
 
 		 150 aa  75.9  0.0000000000002  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  1  n/a   
 
 
-
 
NC_009632  SaurJH1_2154  response regulator receiver  37.93 
 
 		 231 aa  75.9  0.0000000000002  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  0.0828561  n/a   
 
 
-
 
NC_009487  SaurJH9_2116  two component transcriptional regulator  37.93 
 
 		 231 aa  75.9  0.0000000000002  Staphylococcus aureus subsp. aureus JH9  Bacteria  normal  0.291778  n/a   
 
 
-
 
NC_011830  Dhaf_1237  two component transcriptional regulator, winged helix family  36.75 
 
 		 234 aa  75.9  0.0000000000002  Desulfitobacterium hafniense DCB-2  Bacteria  normal  0.178035  n/a   
 
 
-
 
NC_013510  Tcur_3942  response regulator receiver protein  35.45 
 
 		 163 aa  75.1  0.0000000000003  Thermomonospora curvata DSM 43183  Bacteria  normal  1  n/a   
 
 
-
 
NC_010320  Teth514_1997  two component transcriptional regulator  37.4 
 
 		 234 aa  75.1  0.0000000000003  Thermoanaerobacter sp. X514  Bacteria  hitchhiker  0.000000742772  n/a   
 
 
-
 
NC_009720  Xaut_0202  two component transcriptional regulator  32.76 
 
 		 233 aa  74.7  0.0000000000004  Xanthobacter autotrophicus Py2  Bacteria  normal  0.382528  normal  1 
 
 
-
 
NC_009523  RoseRS_3924  response regulator receiver modulated diguanylate cyclase  31.36 
 
 		 443 aa  74.7  0.0000000000004  Roseiflexus sp. RS-1  Bacteria  normal  0.350169  normal  1 
 
 
-
 
NC_007948  Bpro_4464  response regulator receiver domain-containing protein  31.62 
 
 		 250 aa  74.7  0.0000000000004  Polaromonas sp. JS666  Bacteria  normal  1  normal  0.579086 
 
 
-
 
NC_011899  Hore_13280  two component transcriptional regulator, winged helix family  35.9 
 
 		 227 aa  74.7  0.0000000000004  Halothermothrix orenii H 168  Bacteria  hitchhiker  0.0000000536961  n/a   
 
 
-
 
NC_004116  SAG1961  phosphate regulon response regulator PhoB  36.21 
 
 		 225 aa  74.3  0.0000000000005  Streptococcus agalactiae 2603V/R  Bacteria  normal  0.411469  n/a   
 
 
-
 
NC_011138  MADE_03384  response regulator  35.09 
 
 		 221 aa  74.3  0.0000000000005  Alteromonas macleodii 'Deep ecotype'  Bacteria  hitchhiker  0.000742618  n/a   
 
 
-
 
NC_011831  Cagg_0842  response regulator receiver protein  32.76 
 
 		 390 aa  74.3  0.0000000000005  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.884409  normal  1 
 
 
-
 
NC_011891  A2cp1_1223  response regulator receiver protein  33.33 
 
 		 132 aa  74.3  0.0000000000005  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  1  n/a   
 
 
-
 
NC_011145  AnaeK_1155  response regulator receiver protein  33.33 
 
 		 132 aa  74.3  0.0000000000005  Anaeromyxobacter sp. K  Bacteria  normal  0.194588  n/a   
 
 
-
 
NC_007760  Adeh_1095  response regulator receiver domain-containing protein  33.33 
 
 		 138 aa  74.3  0.0000000000006  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.117755  n/a   
 
 
-
 
NC_009921  Franean1_6588  two component transcriptional regulator  29.91 
 
 		 229 aa  73.9  0.0000000000006  Frankia sp. EAN1pec  Bacteria  normal  0.13217  normal  1 
 
 
-
 
NC_009675  Anae109_0442  response regulator receiver protein  33.33 
 
 		 126 aa  73.9  0.0000000000007  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.0489543  normal  1 
 
 
-
 
NC_010172  Mext_4718  phosphate regulon transcriptional regulatory protein PhoB  28.57 
 
 		 239 aa  73.6  0.0000000000008  Methylobacterium extorquens PA1  Bacteria  normal  1  normal  0.220817 
 
 
-
 
NC_007413  Ava_0301  two component LuxR family transcriptional regulator  30.83 
 
 		 231 aa  73.6  0.0000000000008  Anabaena variabilis ATCC 29413  Bacteria  normal  0.54347  normal  1 
 
 
-
 
NC_007925  RPC_4918  two component transcriptional regulator  30.77 
 
 		 234 aa  73.6  0.0000000000008  Rhodopseudomonas palustris BisB18  Bacteria  normal  1  normal  0.134814 
 
 
-
 
NC_009767  Rcas_3221  response regulator receiver modulated diguanylate cyclase  31.36 
 
 		 443 aa  73.6  0.0000000000009  Roseiflexus castenholzii DSM 13941  Bacteria  normal  1  normal  0.0497788 
 
 
-
 
NC_010816  BLD_0042  response regulator  34.75 
 
 		 240 aa  73.2  0.000000000001  Bifidobacterium longum DJO10A  Bacteria  normal  0.382747  n/a   
 
 
-
 
NC_012034  Athe_1456  two component transcriptional regulator, winged helix family  36.75 
 
 		 223 aa  72.8  0.000000000001  Anaerocellum thermophilum DSM 6725  Bacteria  decreased coverage  0.000183373  n/a   
 
 
-
 
NC_013161  Cyan8802_1963  two component transcriptional regulator, winged helix family  33.33 
 
 		 246 aa  73.6  0.000000000001  Cyanothece sp. PCC 8802  Bacteria  normal  1  normal  0.470012 
 
 
-
 
NC_013161  Cyan8802_4411  response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  32.48 
 
 		 1514 aa  73.2  0.000000000001  Cyanothece sp. PCC 8802  Bacteria  normal  1  normal  0.0203527 
 
 
-
 
NC_011726  PCC8801_1936  two component transcriptional regulator, winged helix family  33.33 
 
 		 246 aa  73.6  0.000000000001  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_013161  Cyan8802_3719  response regulator receiver protein  36.21 
 
 		 123 aa  73.2  0.000000000001  Cyanothece sp. PCC 8802  Bacteria  normal  0.173125  normal  0.315103 
 
 
-
 
NC_007760  Adeh_3975  response regulator receiver domain-containing protein  35.9 
 
 		 123 aa  72.8  0.000000000001  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.44357  n/a   
 
 
-
 
NC_007964  Nham_0640  two component transcriptional regulator  29.91 
 
 		 233 aa  73.2  0.000000000001  Nitrobacter hamburgensis X14  Bacteria  normal  0.772339  n/a   
 
 
-
 
NC_011726  PCC8801_4349  response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  32.48 
 
 		 1514 aa  73.2  0.000000000001  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_008242  Meso_4123  two component transcriptional regulator  37.07 
 
 		 242 aa  73.2  0.000000000001  Chelativorans sp. BNC1  Bacteria  normal  1  n/a   
 
 
-
 
NC_008261  CPF_1214  DNA-binding response regulator KdpE  38.94 
 
 		 237 aa  73.2  0.000000000001  Clostridium perfringens ATCC 13124  Bacteria  hitchhiker  0.000130813  n/a   
 
 
-
 
NC_011726  PCC8801_3665  response regulator receiver protein  36.21 
 
 		 123 aa  73.2  0.000000000001  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_008576  Mmc1_2345  two component transcriptional regulator  31.9 
 
 		 252 aa  73.6  0.000000000001  Magnetococcus sp. MC-1  Bacteria  hitchhiker  0.000474063  normal  1 
 
 
-
 
NC_013204  Elen_2563  two component transcriptional regulator, winged helix family  31.9 
 
 		 230 aa  73.2  0.000000000001  Eggerthella lenta DSM 2243  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009972  Haur_1345  response regulator receiver protein  36.21 
 
 		 126 aa  73.2  0.000000000001  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  1  n/a   
 
 
-
 
NC_009428  Rsph17025_1472  response regulator receiver protein  32.76 
 
 		 122 aa  73.2  0.000000000001  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.413604  normal  1 
 
 
-
 
NC_003910  CPS_1208  phosphate regulon response regulator PhoB  33.9 
 
 		 233 aa  72.4  0.000000000002  Colwellia psychrerythraea 34H  Bacteria  normal  1  n/a   
 
 
-
 
NC_011145  AnaeK_4086  response regulator receiver protein  33.62 
 
 		 123 aa  72.4  0.000000000002  Anaeromyxobacter sp. K  Bacteria  normal  0.0365078  n/a   
 
 
-
 
NC_009484  Acry_2951  two component transcriptional regulator  30.17 
 
 		 236 aa  72.4  0.000000000002  Acidiphilium cryptum JF-5  Bacteria  normal  1  n/a   
 
 
-
 
NC_007604  Synpcc7942_1860  two component LuxR family transcriptional regulator  27.42 
 
 		 235 aa  72.4  0.000000000002  Synechococcus elongatus PCC 7942  Bacteria  normal  1  normal  1 
 
 
-
 
NC_014150  Bmur_2474  two component transcriptional regulator, winged helix family  36.13 
 
 		 227 aa  72.8  0.000000000002  Brachyspira murdochii DSM 12563  Bacteria  normal  0.0950849  n/a   
 
 
-
 
NC_007908  Rfer_2540  two component transcriptional regulator  35.34 
 
 		 228 aa  72.4  0.000000000002  Rhodoferax ferrireducens T118  Bacteria  normal  1  n/a   
 
 
-
 
NC_012034  Athe_1487  two component transcriptional regulator, winged helix family  33.9 
 
 		 232 aa  72.4  0.000000000002  Anaerocellum thermophilum DSM 6725  Bacteria  normal  0.487145  n/a   
 
 
-
 
NC_011729  PCC7424_3637  two component transcriptional regulator, winged helix family  33.33 
 
 		 246 aa  72.8  0.000000000002  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  1 
 
 
-
 
NC_008688  Pden_4555  response regulator receiver protein  29.17 
 
 		 123 aa  72.8  0.000000000002  Paracoccus denitrificans PD1222  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009523  RoseRS_0761  two component transcriptional regulator  31.36 
 
 		 229 aa  72.4  0.000000000002  Roseiflexus sp. RS-1  Bacteria  normal  1  normal  0.179681 
 
 
-
 
NC_010524  Lcho_1659  two component transcriptional regulator  30.83 
 
 		 245 aa  71.6  0.000000000003  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  1 
 
 
-
 
NC_004310  BR2143  phosphate regulon transcriptional regulatory protein Phob  30.77 
 
 		 228 aa  71.6  0.000000000003  Brucella suis 1330  Bacteria  normal  1  n/a   
 
 
-
 
NC_013947  Snas_2095  two component transcriptional regulator, winged helix family  33.9 
 
 		 256 aa  71.6  0.000000000003  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007517  Gmet_1737  response regulator receiver domain-containing protein  35.25 
 
 		 277 aa  72  0.000000000003  Geobacter metallireducens GS-15  Bacteria  normal  0.570794  normal  0.630295 
 
 
-
 
NC_007777  Francci3_0234  two component transcriptional regulator  29.91 
 
 		 242 aa  72  0.000000000003  Frankia sp. CcI3  Bacteria  normal  1  normal  0.925989 
 
 
-
 
NC_008010  Dgeo_2844  two component transcriptional regulator  32.2 
 
 		 248 aa  71.6  0.000000000003  Deinococcus geothermalis DSM 11300  Bacteria  normal  1  n/a   
 
 
-
 
NC_010730  SYO3AOP1_0329  two component transcriptional regulator, winged helix family  31.9 
 
 		 231 aa  71.6  0.000000000003  Sulfurihydrogenibium sp. YO3AOP1  Bacteria  normal  1  n/a   
 
 
-
 
NC_008699  Noca_3695  response regulator receiver  30.51 
 
 		 236 aa  71.6  0.000000000003  Nocardioides sp. JS614  Bacteria  normal  0.795948  n/a   
 
 
-
 
NC_010581  Bind_3413  two component transcriptional regulator  28.23 
 
 		 252 aa  71.6  0.000000000004  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  1  normal  0.427436 
 
 
-
 
NC_007604  Synpcc7942_0095  two component transcriptional regulator  34.19 
 
 		 249 aa  71.6  0.000000000004  Synechococcus elongatus PCC 7942  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009901  Spea_2969  two component transcriptional regulator  31.67 
 
 		 229 aa  71.6  0.000000000004  Shewanella pealeana ATCC 700345  Bacteria  decreased coverage  0.000000855765  n/a   
 
 
-
 
NC_010001  Cphy_2827  two component transcriptional regulator  30.17 
 
 		 230 aa  71.2  0.000000000004  Clostridium phytofermentans ISDg  Bacteria  normal  1  n/a   
 
 
-
 
NC_014248  Aazo_5207  winged helix family two component transcriptional regulator  33.33 
 
 		 247 aa  71.2  0.000000000004  'Nostoc azollae' 0708  Bacteria  normal  1  n/a   
 
 
-
 
NC_013525  Tter_0789  response regulator receiver protein  36.75 
 
 		 278 aa  71.6  0.000000000004  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_011729  PCC7424_1976  multi-sensor signal transduction histidine kinase  32.48 
 
 		 1383 aa  71.2  0.000000000004  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.624185 
 
 
-
 
NC_008312  Tery_4937  two component transcriptional regulator  34.19 
 
 		 257 aa  71.6  0.000000000004  Trichodesmium erythraeum IMS101  Bacteria  normal  1  normal  0.565868 
 
 
-
 
NC_009719  Plav_0399  two component transcriptional regulator  32.76 
 
 		 272 aa  71.6  0.000000000004  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.802217  normal  1 
 
 
-
 
NC_007484  Noc_2401  phosphate regulon transcriptional regulatory protein phoB  32.76 
 
 		 229 aa  70.9  0.000000000005  Nitrosococcus oceani ATCC 19707  Bacteria  normal  1  n/a   
 
 
-
 
NC_013061  Phep_4008  response regulator receiver  34.48 
 
 		 1374 aa  70.9  0.000000000005  Pedobacter heparinus DSM 2366  Bacteria  normal  0.702059  normal  1 
 
 
-
 
NC_012034  Athe_1751  two component transcriptional regulator, winged helix family  33.62 
 
 		 234 aa  70.9  0.000000000005  Anaerocellum thermophilum DSM 6725  Bacteria  normal  1  n/a   
 
 
-
 
NC_007778  RPB_3818  PAS/PAC sensor hybrid histidine kinase  35.04 
 
 		 1426 aa  70.9  0.000000000005  Rhodopseudomonas palustris HaA2  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007952  Bxe_B0221  GAF sensor hybrid histidine kinase  31.62 
 
 		 1651 aa  70.9  0.000000000005  Burkholderia xenovorans LB400  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009457  VC0395_A0253  DNA-binding response regulator PhoB  30.51 
 
 		 229 aa  71.2  0.000000000005  Vibrio cholerae O395  Bacteria  normal  1  n/a   
 
 
-
 
NC_008228  Patl_1836  two component AraC family transcriptional regulator  33.33 
 
 		 1341 aa  70.9  0.000000000005  Pseudoalteromonas atlantica T6c  Bacteria  normal  1  n/a   
 
 
-
 
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