More than 300 homologs were found in PanDaTox collection
for query gene PC1_1003 on replicon NC_012917
Organism: Pectobacterium carotovorum subsp. carotovorum PC1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009074  BURPS668_3894  methyl-accepting chemotaxis protein  61.4 
 
 
601 aa  685    Burkholderia pseudomallei 668  Bacteria  normal  0.0518753  n/a   
 
 
-
 
NC_010086  Bmul_4247  methyl-accepting chemotaxis sensory transducer with Cache sensor  58.26 
 
 
599 aa  686    Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_010159  YpAngola_A1452  methyl-accepting chemotaxis protein  63.26 
 
 
595 aa  703    Yersinia pestis Angola  Bacteria  normal  0.19796  normal  0.220045 
 
 
-
 
NC_006348  BMA2894  methyl-accepting chemotaxis protein, putative  61.06 
 
 
605 aa  689    Burkholderia mallei ATCC 23344  Bacteria  normal  0.955347  n/a   
 
 
-
 
NC_007347  Reut_A0036  methyl-accepting chemotaxis sensory transducer  56.93 
 
 
599 aa  639    Ralstonia eutropha JMP134  Bacteria  normal  0.226397  n/a   
 
 
-
 
NC_007434  BURPS1710b_0112  putative methyl-accepting chemotaxis protein  61.4 
 
 
605 aa  684    Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_007511  Bcep18194_B1642  methyl-accepting chemotaxis sensory transducer  59.43 
 
 
599 aa  694    Burkholderia sp. 383  Bacteria  normal  normal  0.255489 
 
 
-
 
NC_007651  BTH_I3209  methyl-accepting chemotaxis protein, putative  61.63 
 
 
601 aa  698    Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_009708  YpsIP31758_2753  methyl-accepting chemotaxis protein  63.09 
 
 
595 aa  701    Yersinia pseudotuberculosis IP 31758  Bacteria  normal  0.0257893  n/a   
 
 
-
 
NC_010465  YPK_2833  methyl-accepting chemotaxis sensory transducer with Cache sensor  63.26 
 
 
595 aa  703    Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_1003  methyl-accepting chemotaxis sensory transducer with Cache sensor  100 
 
 
596 aa  1192    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_007951  Bxe_A1405  methyl-accepting chemotaxis sensory transducer  61.77 
 
 
599 aa  681    Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_008785  BMASAVP1_A3471  putative methyl-accepting chemotaxis protein  61.23 
 
 
605 aa  691    Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_009076  BURPS1106A_3975  methyl-accepting chemotaxis protein  61.4 
 
 
601 aa  685    Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_008061  Bcen_3992  methyl-accepting chemotaxis sensory transducer  58.6 
 
 
599 aa  690    Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008391  Bamb_3790  methyl-accepting chemotaxis sensory transducer  58.76 
 
 
599 aa  669    Burkholderia ambifaria AMMD  Bacteria  normal  normal  0.178746 
 
 
-
 
NC_008543  Bcen2424_4375  methyl-accepting chemotaxis sensory transducer  58.6 
 
 
599 aa  690    Burkholderia cenocepacia HI2424  Bacteria  normal  0.480091  normal 
 
 
-
 
NC_012912  Dd1591_3111  methyl-accepting chemotaxis sensory transducer with Cache sensor  70.47 
 
 
596 aa  874    Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_013421  Pecwa_3307  methyl-accepting chemotaxis sensory transducer with Cache sensor  94.46 
 
 
596 aa  1104    Pectobacterium wasabiae WPP163  Bacteria  normal  0.298951  n/a   
 
 
-
 
NC_010515  Bcenmc03_5980  methyl-accepting chemotaxis sensory transducer with Cache sensor  58.93 
 
 
599 aa  692    Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_010552  BamMC406_4256  methyl-accepting chemotaxis sensory transducer with Cache sensor  58.6 
 
 
599 aa  667    Burkholderia ambifaria MC40-6  Bacteria  normal  normal  0.844754 
 
 
-
 
NC_010681  Bphyt_2718  methyl-accepting chemotaxis sensory transducer with Cache sensor  61.27 
 
 
599 aa  680    Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_012880  Dd703_2920  methyl-accepting chemotaxis sensory transducer with Cache sensor  70.97 
 
 
596 aa  865    Dickeya dadantii Ech703  Bacteria  normal  0.115472  n/a   
 
 
-
 
NC_009436  Ent638_2328  methyl-accepting chemotaxis sensory transducer  55.03 
 
 
594 aa  627  1e-178  Enterobacter sp. 638  Bacteria  normal  normal 
 
 
-
 
NC_010682  Rpic_0536  methyl-accepting chemotaxis sensory transducer with Cache sensor  53.42 
 
 
609 aa  593  1e-168  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_012856  Rpic12D_0523  methyl-accepting chemotaxis sensory transducer with Cache sensor  53.09 
 
 
608 aa  594  1e-168  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_007336  Reut_C6319  histidine kinase, HAMP region:Cache: chemotaxis sensory transducer  51.67 
 
 
601 aa  583  1.0000000000000001e-165  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_008836  BMA10229_A1648  putative methyl-accepting chemotaxis protein  59.09 
 
 
776 aa  570  1e-161  Burkholderia mallei NCTC 10229  Bacteria  normal  0.562276  n/a   
 
 
-
 
NC_003295  RSc0606  putative methyl-accepting chemotaxis transmembrane protein  52.25 
 
 
617 aa  567  1e-160  Ralstonia solanacearum GMI1000  Bacteria  normal  0.535208  normal  0.212062 
 
 
-
 
NC_007509  Bcep18194_C6641  methyl-accepting chemotaxis sensory transducer  48.33 
 
 
609 aa  540  9.999999999999999e-153  Burkholderia sp. 383  Bacteria  normal  normal  0.0855945 
 
 
-
 
NC_008752  Aave_1874  methyl-accepting chemotaxis sensory transducer  49.83 
 
 
597 aa  540  9.999999999999999e-153  Acidovorax citrulli AAC00-1  Bacteria  normal  0.0423277  normal 
 
 
-
 
NC_010512  Bcenmc03_6304  methyl-accepting chemotaxis sensory transducer with Cache sensor  47.33 
 
 
605 aa  518  1.0000000000000001e-145  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.598133  normal 
 
 
-
 
NC_008544  Bcen2424_6698  methyl-accepting chemotaxis sensory transducer  47.33 
 
 
605 aa  518  1.0000000000000001e-145  Burkholderia cenocepacia HI2424  Bacteria  normal  0.0770827  normal  0.965565 
 
 
-
 
NC_008390  Bamb_1247  methyl-accepting chemotaxis sensory transducer  46.67 
 
 
609 aa  503  1e-141  Burkholderia ambifaria AMMD  Bacteria  normal  n/a   
 
 
-
 
NC_008752  Aave_1100  methyl-accepting chemotaxis sensory transducer  48.25 
 
 
611 aa  505  1e-141  Acidovorax citrulli AAC00-1  Bacteria  normal  0.127748  normal 
 
 
-
 
NC_010551  BamMC406_1273  methyl-accepting chemotaxis sensory transducer  46.5 
 
 
609 aa  499  1e-140  Burkholderia ambifaria MC40-6  Bacteria  normal  0.258977  normal  0.0501221 
 
 
-
 
NC_003295  RSc3307  putative methyl-accepting chemotaxis transmembrane protein  44.65 
 
 
646 aa  492  9.999999999999999e-139  Ralstonia solanacearum GMI1000  Bacteria  normal  0.154231  normal 
 
 
-
 
NC_010682  Rpic_3501  methyl-accepting chemotaxis sensory transducer with Cache sensor  44.74 
 
 
600 aa  493  9.999999999999999e-139  Ralstonia pickettii 12J  Bacteria  normal  normal  0.112529 
 
 
-
 
NC_008062  Bcen_6463  methyl-accepting chemotaxis sensory transducer  47.39 
 
 
654 aa  494  9.999999999999999e-139  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_010002  Daci_0582  methyl-accepting chemotaxis sensory transducer  47.76 
 
 
610 aa  486  1e-136  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_007348  Reut_B5136  histidine kinase, HAMP region:Cache: chemotaxis sensory transducer  45.41 
 
 
599 aa  487  1e-136  Ralstonia eutropha JMP134  Bacteria  normal  0.481543  n/a   
 
 
-
 
NC_012856  Rpic12D_3176  methyl-accepting chemotaxis sensory transducer with Cache sensor  44.57 
 
 
600 aa  479  1e-134  Ralstonia pickettii 12D  Bacteria  normal  0.0503971  normal 
 
 
-
 
NC_011992  Dtpsy_2088  methyl-accepting chemotaxis sensory transducer with Cache sensor  45.18 
 
 
617 aa  473  1e-132  Acidovorax ebreus TPSY  Bacteria  normal  0.258516  n/a   
 
 
-
 
NC_007963  Csal_0126  methyl-accepting chemotaxis sensory transducer  41.97 
 
 
613 aa  461  9.999999999999999e-129  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_010002  Daci_3477  methyl-accepting chemotaxis sensory transducer with Cache sensor  42.78 
 
 
606 aa  447  1.0000000000000001e-124  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_008752  Aave_0421  methyl-accepting chemotaxis sensory transducer  43.24 
 
 
618 aa  448  1.0000000000000001e-124  Acidovorax citrulli AAC00-1  Bacteria  normal  0.627209  normal 
 
 
-
 
NC_010002  Daci_3786  methyl-accepting chemotaxis sensory transducer with Cache sensor  43.49 
 
 
610 aa  443  1e-123  Delftia acidovorans SPH-1  Bacteria  normal  0.0254049  normal  0.3858 
 
 
-
 
NC_007908  Rfer_3449  methyl-accepting chemotaxis sensory transducer  42.52 
 
 
632 aa  440  9.999999999999999e-123  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_010625  Bphy_5569  methyl-accepting chemotaxis sensory transducer with Cache sensor  39.55 
 
 
630 aa  298  2e-79  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_007963  Csal_1099  methyl-accepting chemotaxis sensory transducer  33.33 
 
 
699 aa  298  3e-79  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_008752  Aave_1081  methyl-accepting chemotaxis sensory transducer  39.14 
 
 
629 aa  296  6e-79  Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_007953  Bxe_C1139  methyl-accepting chemotaxis sensory transducer, Cache sensor  40.16 
 
 
630 aa  293  5e-78  Burkholderia xenovorans LB400  Bacteria  normal  normal  0.584827 
 
 
-
 
NC_013456  VEA_003139  methyl-accepting chemotaxis protein  32.99 
 
 
627 aa  282  1e-74  Vibrio sp. Ex25  Bacteria  normal  0.116124  n/a   
 
 
-
 
NC_011992  Dtpsy_3481  methyl-accepting chemotaxis sensory transducer  48.73 
 
 
674 aa  281  3e-74  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_008782  Ajs_4123  methyl-accepting chemotaxis sensory transducer  48.73 
 
 
674 aa  281  3e-74  Acidovorax sp. JS42  Bacteria  normal  0.162807  normal  0.87643 
 
 
-
 
NC_010002  Daci_0036  methyl-accepting chemotaxis sensory transducer  53.14 
 
 
567 aa  280  6e-74  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_008825  Mpe_A0586  methyl-accepting chemotaxis sensory transducer  56.74 
 
 
584 aa  276  5e-73  Methylibium petroleiphilum PM1  Bacteria  normal  normal 
 
 
-
 
NC_011094  SeSA_A3769  methyl-accepting chemotaxis protein I  52.49 
 
 
547 aa  276  6e-73  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_4877  chemotactic transducer PctB  29.95 
 
 
629 aa  276  7e-73  Pseudomonas aeruginosa PA7  Bacteria  normal  0.164155  n/a   
 
 
-
 
NC_011083  SeHA_C3889  methyl-accepting chemotaxis protein I  52.49 
 
 
547 aa  276  7e-73  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  normal 
 
 
-
 
NC_009436  Ent638_1858  methyl-accepting chemotaxis sensory transducer  49.71 
 
 
552 aa  276  9e-73  Enterobacter sp. 638  Bacteria  normal  normal  0.332391 
 
 
-
 
NC_009708  YpsIP31758_1642  methyl-accepting chemotaxis protein  54.61 
 
 
557 aa  275  1.0000000000000001e-72  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_011080  SNSL254_A3846  methyl-accepting chemotaxis protein I  52.49 
 
 
547 aa  276  1.0000000000000001e-72  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal 
 
 
-
 
NC_010465  YPK_1753  methyl-accepting chemotaxis sensory transducer  54.61 
 
 
557 aa  275  1.0000000000000001e-72  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_012912  Dd1591_1542  methyl-accepting chemotaxis sensory transducer  48.19 
 
 
566 aa  275  2.0000000000000002e-72  Dickeya zeae Ech1591  Bacteria  normal  0.350049  n/a   
 
 
-
 
NC_008463  PA14_56010  chemotactic transducer PctB  29.95 
 
 
629 aa  275  2.0000000000000002e-72  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_011992  Dtpsy_0931  methyl-accepting chemotaxis sensory transducer  52.23 
 
 
591 aa  274  3e-72  Acidovorax ebreus TPSY  Bacteria  normal  0.269909  n/a   
 
 
-
 
NC_011149  SeAg_B3779  methyl-accepting chemotaxis protein  52.16 
 
 
547 aa  274  3e-72  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
NC_008782  Ajs_1017  methyl-accepting chemotaxis sensory transducer  52.23 
 
 
591 aa  273  4.0000000000000004e-72  Acidovorax sp. JS42  Bacteria  normal  0.696887  normal 
 
 
-
 
NC_010159  YpAngola_A3516  methyl-accepting chemotaxis protein  54.26 
 
 
557 aa  273  5.000000000000001e-72  Yersinia pestis Angola  Bacteria  normal  normal  0.698348 
 
 
-
 
NC_011205  SeD_A3949  methyl-accepting chemotaxis protein I  52.16 
 
 
547 aa  273  6e-72  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.748503  normal 
 
 
-
 
NC_008752  Aave_0104  methyl-accepting chemotaxis sensory transducer  51.76 
 
 
622 aa  272  1e-71  Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_007953  Bxe_C1067  methyl-accepting chemotaxis sensory transducer  40.57 
 
 
634 aa  271  2e-71  Burkholderia xenovorans LB400  Bacteria  normal  0.318926  normal 
 
 
-
 
NC_009783  VIBHAR_01884  hypothetical protein  31.4 
 
 
627 aa  270  4e-71  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_009436  Ent638_2457  methyl-accepting chemotaxis sensory transducer  45.91 
 
 
555 aa  270  5e-71  Enterobacter sp. 638  Bacteria  normal  0.890786  normal 
 
 
-
 
NC_012912  Dd1591_1879  methyl-accepting chemotaxis sensory transducer  46.49 
 
 
661 aa  270  5.9999999999999995e-71  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_007963  Csal_1423  methyl-accepting chemotaxis sensory transducer  42.66 
 
 
584 aa  270  5.9999999999999995e-71  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_012912  Dd1591_1453  methyl-accepting chemotaxis sensory transducer  46.49 
 
 
532 aa  270  7e-71  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_008752  Aave_2241  methyl-accepting chemotaxis sensory transducer  51.06 
 
 
536 aa  270  7e-71  Acidovorax citrulli AAC00-1  Bacteria  unclonable  0.000000611014  hitchhiker  0.00000521325 
 
 
-
 
NC_009439  Pmen_3309  methyl-accepting chemotaxis sensory transducer  30.59 
 
 
625 aa  269  1e-70  Pseudomonas mendocina ymp  Bacteria  normal  normal  0.776822 
 
 
-
 
NC_008782  Ajs_3430  methyl-accepting chemotaxis sensory transducer  54.1 
 
 
584 aa  268  1e-70  Acidovorax sp. JS42  Bacteria  normal  normal 
 
 
-
 
NC_008061  Bcen_4628  methyl-accepting chemotaxis sensory transducer  40.31 
 
 
620 aa  268  1e-70  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008543  Bcen2424_3736  methyl-accepting chemotaxis sensory transducer  40.31 
 
 
620 aa  269  1e-70  Burkholderia cenocepacia HI2424  Bacteria  normal  0.455432  normal  0.0212994 
 
 
-
 
NC_010515  Bcenmc03_3785  methyl-accepting chemotaxis sensory transducer  40.53 
 
 
620 aa  269  1e-70  Burkholderia cenocepacia MC0-3  Bacteria  hitchhiker  0.0060774  normal  0.0147123 
 
 
-
 
NC_012880  Dd703_1514  methyl-accepting chemotaxis sensory transducer  54.09 
 
 
562 aa  268  2e-70  Dickeya dadantii Ech703  Bacteria  normal  0.957025  n/a   
 
 
-
 
NC_007974  Rmet_3723  HAMP domain-containing protein  36.34 
 
 
628 aa  268  2e-70  Cupriavidus metallidurans CH34  Bacteria  normal  0.21159  normal  0.539738 
 
 
-
 
NC_010002  Daci_3834  methyl-accepting chemotaxis sensory transducer  50 
 
 
595 aa  268  2e-70  Delftia acidovorans SPH-1  Bacteria  normal  0.10184  normal  0.0113192 
 
 
-
 
NC_008752  Aave_1344  methyl-accepting chemotaxis sensory transducer  53.36 
 
 
536 aa  268  2e-70  Acidovorax citrulli AAC00-1  Bacteria  normal  0.129873  normal  0.199885 
 
 
-
 
NC_011992  Dtpsy_2762  methyl-accepting chemotaxis sensory transducer  53.77 
 
 
584 aa  268  2.9999999999999995e-70  Acidovorax ebreus TPSY  Bacteria  normal  0.636912  n/a   
 
 
-
 
NC_007005  Psyr_3534  histidine kinase, HAMP region:Cache: chemotaxis sensory transducer  30.74 
 
 
629 aa  267  5e-70  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.667463  normal  0.0882884 
 
 
-
 
NC_013421  Pecwa_2372  methyl-accepting chemotaxis sensory transducer  36.5 
 
 
657 aa  267  5e-70  Pectobacterium wasabiae WPP163  Bacteria  normal  0.63052  n/a   
 
 
-
 
NC_007912  Sde_3105  putative methyl-accepting chemotaxis sensory transducer  52.31 
 
 
767 aa  266  5.999999999999999e-70  Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_008391  Bamb_5471  methyl-accepting chemotaxis sensory transducer  52.38 
 
 
620 aa  266  8.999999999999999e-70  Burkholderia ambifaria AMMD  Bacteria  normal  0.407039  normal 
 
 
-
 
NC_010552  BamMC406_3618  methyl-accepting chemotaxis sensory transducer  52.38 
 
 
620 aa  266  1e-69  Burkholderia ambifaria MC40-6  Bacteria  normal  0.0344374  normal 
 
 
-
 
NC_009456  VC0395_0173  methyl-accepting chemotaxis protein  30.51 
 
 
639 aa  266  1e-69  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_011992  Dtpsy_2974  methyl-accepting chemotaxis sensory transducer with Cache sensor  46.01 
 
 
579 aa  265  1e-69  Acidovorax ebreus TPSY  Bacteria  hitchhiker  0.00885268  n/a   
 
 
-
 
NC_010002  Daci_5410  methyl-accepting chemotaxis sensory transducer  49.56 
 
 
635 aa  265  2e-69  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_007908  Rfer_2354  methyl-accepting chemotaxis sensory transducer  52.17 
 
 
554 aa  265  2e-69  Rhodoferax ferrireducens T118  Bacteria  normal  0.547249  n/a   
 
 
-
 
NC_007908  Rfer_0990  methyl-accepting chemotaxis sensory transducer  49.22 
 
 
542 aa  265  3e-69  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_4172  methyl-accepting chemotaxis sensory transducer  47.59 
 
 
653 aa  264  3e-69  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
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