| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_3501 |
|---|
| Symbol | |
|---|
| ID | 6288462 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12J |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010682 |
|---|
| Strand | - |
|---|
| Start bp | 3670666 |
|---|
| End bp | 3672468 |
|---|
| Gene Length | 1803 bp |
|---|
| Protein Length | 600 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 642627086 |
|---|
| Product | methyl-accepting chemotaxis sensory transducer with Cache sensor |
|---|
| Protein accession | YP_001901053 |
|---|
| Protein GI | 187930566 |
|---|
| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0840] Methyl-accepting chemotaxis protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 0.112529 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCTCCT CCCTCCGCAC CCGCATTCTC TTCATCTCAT CGGCCACCGT GGTTGGTGCC
CTGGCGCTGT CTGGGGCCGC AACGTATTCC ATCGTGCGTT CCAACACGAT GGAATCGATC
GACCAGAACC TGGCCGCCGT TGCCAGCGGC AACACGCTCG CCATCGACAA GTGGGTCGGG
GCAAAGGCAC AGGCCGTGAA GGCCACCGCC GGCGTGATCG AGCACGGTGA CCCGCAAGGC
TTCGGCAAGC ACATGGGCGA TGCCAACGGC TTCCCGATCA TCACGATCGG CTGGACCGAC
AAGAGCTTCA TCTCCACCAG CGCCACCACG CCCAAGGACT ACGATCCGAC CGGCCGCCCC
TGGTACAAGC AGGCAATCGC TGCGGGCCAA CTGCTCGTCA CCAAGCCCTA CGGCGACGTG
TCGACCGGCG TGCCGTACGT GTCGTTTGCT GCGCCGCTCG TCAAGAATGG CGAAACCACC
GGTGCGTTGT CCGGGGCTGT GCCGCTCGAC GGCGTGCGCG AGGTGGTCGC GGCGGTACAC
CCGACACCGT CGAGCCTCGC CTTCGTGGTC GCCAAGGATG GCCAGGTGAT CGCTCACCCT
GACGCAAAGC TGATGCTCAA GCCGGCCACC GACGTTGCGC CGTCGCTCAC CGTCGATACG
CTCGCCAACC TGGCCAAGGC GACGTCGCCG CTGGAGGTTG AACTGGCCGG CGCGCCGAAA
CTGCTCAAGG CGCAGGCCGT GCAGGGCACC GACTGGTATC TTGTAATCGC GCTGGACAAG
GCCGAAGCCA CCGCCGGTTT GCGTAACGTC GTCAAGGCGC TGGCCGTGGC CATGGTGCTG
CTGACGCTGG CCGCTGTGGG CATTGCCGCG TTCTTCACGT CGCAATCGTT CCGCCGCCTG
TCGCAGGTGC GCGATGCGAT GGACACCATC GGCTCCGGCG GCGGCGACCT GACGCACCGC
CTGCCCGTGG TCGGCAACGA TGAAGTCGCG CAGATCAGCG CGTCGTTCAA CACCTTCATC
GACAAGATTG GCGAAGTGCT GCTGGAAGTG CGCGCCAGCG TCGACAGCAT GAAATCCGCC
ACCGGCGAGA TCGAAGCGGG CAACCGCGAT CTCTCCAACC GGACCGAGGT TTCGGCCAGC
AACCTGCAGG AAACCTCTGC CGCGTTGACG GAGCTGACGA CCAGCGTGAA GAACTCTGCC
GATGCGGCCG TGCAGGCCAC GCGCCTGGCC AGCGACGCAA GCGATGCCGC CACGCGCGGC
GGCGAGGTGG TTTCCAGCGC CGTCAGCACG ATGGACGAAA TCGCCAAGTC GTCGGCGCGC
ATTACCGAGA TCATCGGCGT GATCGACAGC ATTGCGTTCC AGACCAACAT CCTCGCGCTG
AACGCTGCAG TGGAAGCGGC CCGCGCCGGC GAGAACGGCC GCGGCTTTGC CGTGGTGGCC
GGCGAGGTGC GCACGCTGGC ACAACGCAGC GCTACGGCCG CGCGCGAAAT CAAAGACCTG
ATCCAGGCAT CGGAAGCCAG CGTGAAGACC GGCGCGCAAC GCGTGCAGGC CGCCGGCGCA
ACGATGCAGG AAATCGTGCA GGGCATCGAA CGTGTGGCGC GCATCATCGG CGAGATCGAC
GGCGCGATGC ACGAGCAGAG CACTGGCATC AGCCAGATCG ATCGCAGCGT CGCCGAGATG
GATCAGGCCA CGCAGCAGAA CGCGGCACTG GTGGAGCAGT CGACGGCTGC ATCGTCCATG
CTCAACGAAC AGGCGCACGG CCTGGCTCGC ACGGTTGGGC TGTTCAAGTT GCGCAACGTC
TGA
|
|---|
| Protein sequence | MISSLRTRIL FISSATVVGA LALSGAATYS IVRSNTMESI DQNLAAVASG NTLAIDKWVG
AKAQAVKATA GVIEHGDPQG FGKHMGDANG FPIITIGWTD KSFISTSATT PKDYDPTGRP
WYKQAIAAGQ LLVTKPYGDV STGVPYVSFA APLVKNGETT GALSGAVPLD GVREVVAAVH
PTPSSLAFVV AKDGQVIAHP DAKLMLKPAT DVAPSLTVDT LANLAKATSP LEVELAGAPK
LLKAQAVQGT DWYLVIALDK AEATAGLRNV VKALAVAMVL LTLAAVGIAA FFTSQSFRRL
SQVRDAMDTI GSGGGDLTHR LPVVGNDEVA QISASFNTFI DKIGEVLLEV RASVDSMKSA
TGEIEAGNRD LSNRTEVSAS NLQETSAALT ELTTSVKNSA DAAVQATRLA SDASDAATRG
GEVVSSAVST MDEIAKSSAR ITEIIGVIDS IAFQTNILAL NAAVEAARAG ENGRGFAVVA
GEVRTLAQRS ATAAREIKDL IQASEASVKT GAQRVQAAGA TMQEIVQGIE RVARIIGEID
GAMHEQSTGI SQIDRSVAEM DQATQQNAAL VEQSTAASSM LNEQAHGLAR TVGLFKLRNV
|
|---|
| |