More than 300 homologs were found in PanDaTox collection
for query gene Krad_3254 on replicon NC_009664
Organism: Kineococcus radiotolerans SRS30216



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009664  Krad_3254  short chain dehydrogenase  100 
 
 
258 aa  507  1e-143  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.138525 
 
 
-
 
NC_008541  Arth_2122  short chain dehydrogenase  62.7 
 
 
253 aa  285  7e-76  Arthrobacter sp. FB24  Bacteria  normal  0.115757  n/a   
 
 
-
 
NC_013172  Bfae_20000  short chain dehydrogenase  61.73 
 
 
251 aa  277  1e-73  Brachybacterium faecium DSM 4810  Bacteria  normal  0.332114  n/a   
 
 
-
 
NC_011886  Achl_1873  short chain dehydrogenase  60.25 
 
 
250 aa  271  1e-71  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal  0.076245 
 
 
-
 
NC_012803  Mlut_11590  short chain dehydrogenase  57.32 
 
 
252 aa  241  6e-63  Micrococcus luteus NCTC 2665  Bacteria  normal  n/a   
 
 
-
 
NC_009972  Haur_1851  short-chain dehydrogenase/reductase SDR  47.95 
 
 
246 aa  201  7e-51  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_008146  Mmcs_0102  short chain dehydrogenase  46.37 
 
 
228 aa  146  3e-34  Mycobacterium sp. MCS  Bacteria  normal  0.249592  n/a   
 
 
-
 
NC_008705  Mkms_0111  short chain dehydrogenase  46.37 
 
 
228 aa  146  3e-34  Mycobacterium sp. KMS  Bacteria  normal  normal  0.158217 
 
 
-
 
NC_009077  Mjls_0092  short chain dehydrogenase  46.37 
 
 
228 aa  146  3e-34  Mycobacterium sp. JLS  Bacteria  normal  normal  0.153032 
 
 
-
 
NC_008726  Mvan_1615  short chain dehydrogenase  44.26 
 
 
214 aa  133  3e-30  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal  0.0128801 
 
 
-
 
NC_013440  Hoch_5030  short-chain dehydrogenase/reductase SDR  39.82 
 
 
248 aa  92.4  7e-18  Haliangium ochraceum DSM 14365  Bacteria  normal  0.574158  normal  0.46394 
 
 
-
 
NC_014148  Plim_1674  short-chain dehydrogenase/reductase SDR  33.85 
 
 
254 aa  87.4  2e-16  Planctomyces limnophilus DSM 3776  Bacteria  normal  n/a   
 
 
-
 
NC_013525  Tter_0966  short-chain dehydrogenase/reductase SDR  31.25 
 
 
251 aa  86.7  3e-16  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
BN001308  ANIA_00146  oxidoreductase, putative (Eurofung)  31.35 
 
 
265 aa  84.7  0.000000000000001  Aspergillus nidulans FGSC A4  Eukaryota  normal  0.465009  normal 
 
 
-
 
NC_013037  Dfer_1528  short-chain dehydrogenase/reductase SDR  32.7 
 
 
246 aa  84.7  0.000000000000001  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.606354  normal 
 
 
-
 
NC_008726  Mvan_5843  short-chain dehydrogenase/reductase SDR  39.58 
 
 
248 aa  84  0.000000000000002  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal  0.364281 
 
 
-
 
NC_006368  lpp0423  enoyl-(acyl carrier protein) reductase  31.05 
 
 
252 aa  83.6  0.000000000000003  Legionella pneumophila str. Paris  Bacteria  n/a    n/a   
 
 
-
 
NC_006369  lpl0399  enoyl-(acyl carrier protein) reductase  31.05 
 
 
252 aa  83.6  0.000000000000003  Legionella pneumophila str. Lens  Bacteria  n/a    n/a   
 
 
-
 
NC_013132  Cpin_2887  short-chain dehydrogenase/reductase SDR  37.59 
 
 
251 aa  83.2  0.000000000000004  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.755812  normal 
 
 
-
 
NC_008578  Acel_1197  short-chain dehydrogenase/reductase SDR  31.77 
 
 
277 aa  82  0.000000000000008  Acidothermus cellulolyticus 11B  Bacteria  normal  0.0837629  normal 
 
 
-
 
BN001304  ANIA_07806  Versicolorin reductase (EC 1.1.-.-) [Source:UniProtKB/Swiss-Prot;Acc:Q00791]  34.12 
 
 
264 aa  79.7  0.00000000000004  Aspergillus nidulans FGSC A4  Eukaryota  hitchhiker  0.00450533  normal  0.460888 
 
 
-
 
NC_007614  Nmul_A1378  Short-chain dehydrogenase/reductase SDR  34.05 
 
 
247 aa  79.7  0.00000000000005  Nitrosospira multiformis ATCC 25196  Bacteria  normal  n/a   
 
 
-
 
NC_010678  Rpic_4824  short-chain dehydrogenase/reductase SDR  40.94 
 
 
254 aa  79.3  0.00000000000005  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_012857  Rpic12D_3747  short-chain dehydrogenase/reductase SDR  40.94 
 
 
254 aa  79.3  0.00000000000005  Ralstonia pickettii 12D  Bacteria  normal  0.191543  normal 
 
 
-
 
NC_009077  Mjls_0852  short-chain dehydrogenase/reductase SDR  38.55 
 
 
248 aa  78.6  0.00000000000008  Mycobacterium sp. JLS  Bacteria  normal  0.424016  normal 
 
 
-
 
NC_008146  Mmcs_0834  short-chain dehydrogenase/reductase SDR  38.55 
 
 
248 aa  78.6  0.00000000000008  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_0852  short-chain dehydrogenase/reductase SDR  38.55 
 
 
248 aa  78.6  0.00000000000008  Mycobacterium sp. KMS  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_2058  short-chain dehydrogenase/reductase SDR  38.19 
 
 
246 aa  78.6  0.0000000000001  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_012850  Rleg_3357  short chain dehydrogenase  39.04 
 
 
247 aa  77.8  0.0000000000002  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.0533956 
 
 
-
 
NC_010508  Bcenmc03_2504  short-chain dehydrogenase/reductase SDR  34.81 
 
 
245 aa  76.6  0.0000000000003  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.0547462  normal 
 
 
-
 
NC_007347  Reut_A1622  Short-chain dehydrogenase/reductase SDR  35.5 
 
 
245 aa  77  0.0000000000003  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_013205  Aaci_2412  enoyl-(acyl carrier protein) reductase  32.02 
 
 
258 aa  77  0.0000000000003  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  n/a   
 
 
-
 
NC_009441  Fjoh_4444  short-chain dehydrogenase/reductase SDR  33.86 
 
 
246 aa  76.3  0.0000000000004  Flavobacterium johnsoniae UW101  Bacteria  normal  0.740498  n/a   
 
 
-
 
NC_013385  Adeg_0287  short-chain dehydrogenase/reductase SDR  39.37 
 
 
253 aa  76.3  0.0000000000004  Ammonifex degensii KC4  Bacteria  normal  0.129193  n/a   
 
 
-
 
NC_009667  Oant_2226  short-chain dehydrogenase/reductase SDR  34.41 
 
 
248 aa  76.3  0.0000000000004  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_007908  Rfer_0911  short-chain dehydrogenase/reductase SDR  32.78 
 
 
254 aa  76.3  0.0000000000005  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_010625  Bphy_6999  short-chain dehydrogenase/reductase SDR  37.24 
 
 
255 aa  75.9  0.0000000000005  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_009441  Fjoh_2643  short-chain dehydrogenase/reductase SDR  28.5 
 
 
334 aa  75.9  0.0000000000005  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_013730  Slin_5292  short-chain dehydrogenase/reductase SDR  34.48 
 
 
300 aa  76.3  0.0000000000005  Spirosoma linguale DSM 74  Bacteria  normal  0.319997  normal  0.350002 
 
 
-
 
NC_003296  RS05466  dehydrogenase oxidoreductase protein  38.41 
 
 
255 aa  75.9  0.0000000000006  Ralstonia solanacearum GMI1000  Bacteria  normal  0.968817  normal  0.104137 
 
 
-
 
NC_011666  Msil_3776  short-chain dehydrogenase/reductase SDR  35.8 
 
 
247 aa  75.9  0.0000000000006  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_007777  Francci3_2163  short-chain dehydrogenase/reductase SDR  47.78 
 
 
275 aa  75.9  0.0000000000006  Frankia sp. CcI3  Bacteria  normal  normal  0.679484 
 
 
-
 
NC_008060  Bcen_1246  short-chain dehydrogenase/reductase SDR  34.36 
 
 
335 aa  75.9  0.0000000000006  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.927114  n/a   
 
 
-
 
NC_008544  Bcen2424_6586  short-chain dehydrogenase/reductase SDR  34.36 
 
 
335 aa  75.9  0.0000000000006  Burkholderia cenocepacia HI2424  Bacteria  normal  0.830153  normal 
 
 
-
 
NC_009675  Anae109_3255  short-chain dehydrogenase/reductase SDR  32.98 
 
 
250 aa  75.9  0.0000000000007  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal 
 
 
-
 
NC_009972  Haur_1493  short-chain dehydrogenase/reductase SDR  35.62 
 
 
249 aa  75.9  0.0000000000007  Herpetosiphon aurantiacus ATCC 23779  Bacteria  hitchhiker  0.0000373028  n/a   
 
 
-
 
NC_010571  Oter_3349  short-chain dehydrogenase/reductase SDR  41.96 
 
 
287 aa  75.5  0.0000000000008  Opitutus terrae PB90-1  Bacteria  normal  0.426721  normal 
 
 
-
 
NC_010581  Bind_2992  short-chain dehydrogenase/reductase SDR  32.19 
 
 
285 aa  75.5  0.0000000000008  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal 
 
 
-
 
NC_009620  Smed_3675  short-chain dehydrogenase/reductase SDR  30.93 
 
 
248 aa  74.7  0.000000000001  Sinorhizobium medicae WSM419  Bacteria  normal  0.933884  hitchhiker  0.00557136 
 
 
-
 
NC_009511  Swit_3284  short-chain dehydrogenase/reductase SDR  38.51 
 
 
266 aa  74.7  0.000000000001  Sphingomonas wittichii RW1  Bacteria  normal  normal  0.197141 
 
 
-
 
NC_013743  Htur_0997  short-chain dehydrogenase/reductase SDR  46.32 
 
 
260 aa  74.7  0.000000000001  Haloterrigena turkmenica DSM 5511  Archaea  n/a    n/a   
 
 
-
 
NC_013501  Rmar_1167  short-chain dehydrogenase/reductase SDR  39.29 
 
 
252 aa  75.1  0.000000000001  Rhodothermus marinus DSM 4252  Bacteria  normal  n/a   
 
 
-
 
NC_010676  Bphyt_6655  short-chain dehydrogenase/reductase SDR  33.16 
 
 
248 aa  74.7  0.000000000001  Burkholderia phytofirmans PsJN  Bacteria  normal  0.332665  normal  0.273672 
 
 
-
 
NC_008148  Rxyl_3007  short-chain dehydrogenase/reductase SDR  38.3 
 
 
252 aa  74.7  0.000000000001  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.22334  n/a   
 
 
-
 
NC_011365  Gdia_0886  short-chain dehydrogenase/reductase SDR  35.29 
 
 
246 aa  75.1  0.000000000001  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  normal 
 
 
-
 
NC_011369  Rleg2_3099  short chain dehydrogenase  36.96 
 
 
247 aa  73.9  0.000000000002  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.0900092 
 
 
-
 
NC_009921  Franean1_2395  short-chain dehydrogenase/reductase SDR  34.87 
 
 
245 aa  74.3  0.000000000002  Frankia sp. EAN1pec  Bacteria  normal  0.17766  normal 
 
 
-
 
NC_010552  BamMC406_4640  short-chain dehydrogenase/reductase SDR  34.86 
 
 
246 aa  74.3  0.000000000002  Burkholderia ambifaria MC40-6  Bacteria  normal  0.384242  normal 
 
 
-
 
NC_010557  BamMC406_5538  short-chain dehydrogenase/reductase SDR  35.86 
 
 
255 aa  73.9  0.000000000002  Burkholderia ambifaria MC40-6  Bacteria  decreased coverage  0.00687705  normal 
 
 
-
 
NC_013037  Dfer_2307  short-chain dehydrogenase/reductase SDR  30.27 
 
 
292 aa  73.9  0.000000000002  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.381228  normal 
 
 
-
 
NC_009077  Mjls_3399  short-chain dehydrogenase/reductase SDR  32.78 
 
 
251 aa  74.3  0.000000000002  Mycobacterium sp. JLS  Bacteria  normal  0.265476  normal  0.579067 
 
 
-
 
NC_008146  Mmcs_3389  short-chain dehydrogenase/reductase SDR  32.78 
 
 
251 aa  74.3  0.000000000002  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_012912  Dd1591_3138  short-chain dehydrogenase/reductase SDR  35.14 
 
 
246 aa  74.3  0.000000000002  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_3451  short-chain dehydrogenase/reductase SDR  32.78 
 
 
251 aa  74.3  0.000000000002  Mycobacterium sp. KMS  Bacteria  normal  0.282866  normal  0.301564 
 
 
-
 
NC_010505  Mrad2831_1756  short-chain dehydrogenase/reductase SDR  31.58 
 
 
256 aa  73.9  0.000000000003  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_007510  Bcep18194_A5811  Short-chain dehydrogenase/reductase SDR  34.81 
 
 
245 aa  73.2  0.000000000003  Burkholderia sp. 383  Bacteria  normal  normal  0.256095 
 
 
-
 
NC_012853  Rleg_5903  short-chain dehydrogenase/reductase SDR  31 
 
 
333 aa  73.6  0.000000000003  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.828162  normal 
 
 
-
 
NC_007760  Adeh_2818  short-chain dehydrogenase/reductase SDR  31.78 
 
 
295 aa  73.6  0.000000000003  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_013730  Slin_4034  short-chain dehydrogenase/reductase SDR  29.73 
 
 
335 aa  73.9  0.000000000003  Spirosoma linguale DSM 74  Bacteria  hitchhiker  0.0000556089  normal 
 
 
-
 
NC_007951  Bxe_A2692  short chain dehydrogenase  36.09 
 
 
246 aa  73.2  0.000000000003  Burkholderia xenovorans LB400  Bacteria  normal  normal  0.843441 
 
 
-
 
NC_008228  Patl_0769  short-chain dehydrogenase/reductase SDR  35.07 
 
 
244 aa  73.6  0.000000000003  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_013093  Amir_3986  short-chain dehydrogenase/reductase SDR  32.88 
 
 
297 aa  73.6  0.000000000003  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_009921  Franean1_3110  short-chain dehydrogenase/reductase SDR  37.28 
 
 
246 aa  73.2  0.000000000004  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_012803  Mlut_06640  short-chain alcohol dehydrogenase like protein  36.24 
 
 
309 aa  73.2  0.000000000004  Micrococcus luteus NCTC 2665  Bacteria  normal  n/a   
 
 
-
 
NC_010338  Caul_0993  short-chain dehydrogenase/reductase SDR  35.5 
 
 
246 aa  73.2  0.000000000004  Caulobacter sp. K31  Bacteria  normal  normal  0.934127 
 
 
-
 
NC_012856  Rpic12D_1522  short-chain dehydrogenase/reductase SDR  34.9 
 
 
254 aa  73.2  0.000000000004  Ralstonia pickettii 12D  Bacteria  normal  0.0490038  normal  0.520511 
 
 
-
 
NC_009712  Mboo_1745  short-chain dehydrogenase/reductase SDR  44.94 
 
 
253 aa  73.2  0.000000000004  Candidatus Methanoregula boonei 6A8  Archaea  normal  normal 
 
 
-
 
NC_008541  Arth_1065  short-chain dehydrogenase/reductase SDR  35.62 
 
 
297 aa  73.2  0.000000000004  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_013521  Sked_17140  dehydrogenase of unknown specificity, short-chain alcohol dehydrogenase like protein  36.99 
 
 
307 aa  72.8  0.000000000005  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.391545  normal 
 
 
-
 
NC_013595  Sros_0456  short-chain dehydrogenase  36.31 
 
 
243 aa  72.8  0.000000000005  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_007778  RPB_1505  Short-chain dehydrogenase/reductase SDR  34.75 
 
 
286 aa  72.8  0.000000000005  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.412824 
 
 
-
 
NC_008148  Rxyl_0016  short-chain dehydrogenase/reductase SDR  35.56 
 
 
260 aa  72.4  0.000000000007  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_2059  3-oxoacyl-[acyl-carrier-protein] reductase  31.92 
 
 
247 aa  72  0.000000000008  Geobacter metallireducens GS-15  Bacteria  normal  normal  0.0884699 
 
 
-
 
NC_010512  Bcenmc03_6190  short-chain dehydrogenase/reductase SDR  33.74 
 
 
335 aa  72  0.000000000008  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_4663  short-chain dehydrogenase/reductase SDR  40.88 
 
 
248 aa  72  0.000000000009  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.273887  normal 
 
 
-
 
NC_013947  Snas_3305  short-chain dehydrogenase/reductase SDR  33.51 
 
 
248 aa  72  0.000000000009  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.225373  normal 
 
 
-
 
NC_013235  Namu_3886  Beta-ketoacyl synthase  30.3 
 
 
2014 aa  72  0.000000000009  Nakamurella multipartita DSM 44233  Bacteria  normal  normal  0.190721 
 
 
-
 
NC_011761  AFE_2225  glucose 1-dehydrogenase, putative  32.27 
 
 
261 aa  72  0.000000000009  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  n/a   
 
 
-
 
NC_008255  CHU_1661  glucose 1-dehydrogenase  42.71 
 
 
268 aa  72  0.000000000009  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.218295  normal 
 
 
-
 
NC_011206  Lferr_1879  short-chain dehydrogenase/reductase SDR  32.27 
 
 
261 aa  72  0.000000000009  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  normal  0.828765 
 
 
-
 
NC_011145  AnaeK_2906  short-chain dehydrogenase/reductase SDR  32.55 
 
 
295 aa  71.2  0.00000000001  Anaeromyxobacter sp. K  Bacteria  normal  0.0346785  n/a   
 
 
-
 
NC_011772  BCG9842_B2870  3-oxoacyl-[acyl-carrier-protein] reductase  31.35 
 
 
254 aa  71.6  0.00000000001  Bacillus cereus G9842  Bacteria  normal  normal 
 
 
-
 
NC_007005  Psyr_3542  Short-chain dehydrogenase/reductase SDR  37.69 
 
 
249 aa  71.6  0.00000000001  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.0247071  normal  0.033589 
 
 
-
 
NC_010681  Bphyt_1428  short-chain dehydrogenase/reductase SDR  34.91 
 
 
247 aa  71.6  0.00000000001  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_010622  Bphy_0342  short-chain dehydrogenase/reductase SDR  35.88 
 
 
247 aa  71.6  0.00000000001  Burkholderia phymatum STM815  Bacteria  normal  0.973802  normal 
 
 
-
 
NC_008009  Acid345_0122  short-chain dehydrogenase/reductase SDR  48.35 
 
 
256 aa  71.2  0.00000000001  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal  0.105219 
 
 
-
 
NC_013132  Cpin_0128  short-chain dehydrogenase/reductase SDR  33.15 
 
 
246 aa  71.2  0.00000000001  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_008148  Rxyl_2393  3-ketoacyl-(acyl-carrier-protein) reductase  31.47 
 
 
247 aa  71.6  0.00000000001  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.114782  n/a   
 
 
-
 
NC_008781  Pnap_3989  short-chain dehydrogenase/reductase SDR  45.19 
 
 
260 aa  71.6  0.00000000001  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.673066  normal  0.302564 
 
 
-
 
NC_013743  Htur_2454  short-chain dehydrogenase/reductase SDR  34.78 
 
 
247 aa  71.6  0.00000000001  Haloterrigena turkmenica DSM 5511  Archaea  n/a    n/a   
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>