| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_1428 |
|---|
| Symbol | |
|---|
| ID | 6282614 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phytofirmans PsJN |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010681 |
|---|
| Strand | - |
|---|
| Start bp | 1598021 |
|---|
| End bp | 1598764 |
|---|
| Gene Length | 744 bp |
|---|
| Protein Length | 247 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 642620994 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_001895067 |
|---|
| Protein GI | 187923425 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 35 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACACGC TCAACAACGC CCAGGTCGCA ATCGTCACAG GCGCATCGCG CGGCATCGGG
GCAGCGGTCG CGCAACGTCT GGCCAAGGAC GGTTTCGCCG TCGCGATCAA TTACGCATCC
AGTTCGGCCG AAGCCGATCA TCTCGTCGCC GGACTGACCG CGGCCGGCGC CAAAGCCATC
GCGGTGAAAG CCGACGTGTC GAACACCAAC GACGTGCGCC GCCTGTTCGA GATCACCGAA
CAGCAGCTCG GCAAGGTGGA CGTGCTGGTC AACAACGCGG GCGTGCTCAA GACCGTGCCG
CTTGCCGACA CCAGCGACGC GCTCTACGAC CAGACCTTTG GCATCAACGT GCGCGGCACC
TTCAACACCT TGCGCGAAGC TGCTGCGCGC ATGAACGACG GCGGCCGCAT CGTCAACTTT
TCGAGCACTA CGCTGGCGCT GAACATGCCG GGCTACGCGA TCTACAACGC GACGAAAGCC
GCCGTCGAAG CGTTCACGCA CGTGTTCGCC AAGGAACTGC GCGGCCGCAA CATCACCGTC
AATGCCGTGG CGCCGGGTCC GATCGCGACG TTGCTGTTCC TCGACGGCAA GACCGAAGAA
CAGGTCCAGA CCTTCGCGAA GATGCCGCCG CTACAACGCC TCGGTCAGCC GGACGACATC
GCGTCGGTGG TGGCGTTCCT CGCGGGTCCT GACGCGGGCT GGGTCAATGG CCAGATTCTG
CGTGCCAACG GCGGTCTTGC TTGA
|
|---|
| Protein sequence | MNTLNNAQVA IVTGASRGIG AAVAQRLAKD GFAVAINYAS SSAEADHLVA GLTAAGAKAI
AVKADVSNTN DVRRLFEITE QQLGKVDVLV NNAGVLKTVP LADTSDALYD QTFGINVRGT
FNTLREAAAR MNDGGRIVNF SSTTLALNMP GYAIYNATKA AVEAFTHVFA KELRGRNITV
NAVAPGPIAT LLFLDGKTEE QVQTFAKMPP LQRLGQPDDI ASVVAFLAGP DAGWVNGQIL
RANGGLA
|
|---|
| |