| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_5538 |
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| Symbol | |
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| ID | 6181993 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010557 |
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| Strand | - |
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| Start bp | 32895 |
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| End bp | 33662 |
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| Gene Length | 768 bp |
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| Protein Length | 255 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 641688670 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_001815534 |
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| Protein GI | 172064822 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.00687705 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 35 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACTCAAT CCCTGAAGGG CAAAACAGCG CTCGTGACCG GGGCGTCGCG CGGCATTGGC
CGCGCCATCG CCGAACGCCT TGCAAAGGAC GGTGCGACCG TCGCGTTAAC CTACAACGCC
AGCAAATCCG GCGCGGACGA GGCGATCGCA GCCATCGAGA AAGCGGGAGG CACCGCGTTC
GCGATCCACG CGGATCTCGT TGATGCGGCG ACCGTCCCGG CTTTGTTCGA GAAACTCGAC
GACGAGTTCA CCCAGCGGAA CGGCAGCCGA GCGCTCGACA TTCTGGTCAA CAATGCCGGC
AATTCCGGCT GGCTTGGCTT CAAGGACGCA ACGCCGGAAA GCTGGGACAC GCTGATGGCG
GTCTACGCCC GCGCGCCGTT CTTCATCATT CAGGCCGCGC TGGATCGTCT CGCCGATGGC
GCACGCATCA TCAACATTTC TTCCGCCGCT GCCACGAAGC CCGTGACCGC AGCACCCGTC
TATTCAATGG CGAAAGCCGC CATCAATACG CTGACCCATA CGCTCGCCAT CGAGCTGGGG
CCGCGTGGCA TCACCGCGAA TGCCGTCGCG CCGGGCTTCA CGCGAACGGA TGCGAACGCC
GCCTTTCGGG AGAATCCCGA ACTCGTCAAG GCGGCCGAGG CCCAGATCGC GCTGGGCCGC
TTTGGCGAGC CTTCGGAAAT CGCCGCCGTC GTGGCGTTCC TGGCCTCCGC TGATGGCCAT
TGGGTGACCG GCCAGACGAT TGAAGCGAGC GGCGGTTACA AGCTCTGA
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| Protein sequence | MTQSLKGKTA LVTGASRGIG RAIAERLAKD GATVALTYNA SKSGADEAIA AIEKAGGTAF
AIHADLVDAA TVPALFEKLD DEFTQRNGSR ALDILVNNAG NSGWLGFKDA TPESWDTLMA
VYARAPFFII QAALDRLADG ARIINISSAA ATKPVTAAPV YSMAKAAINT LTHTLAIELG
PRGITANAVA PGFTRTDANA AFRENPELVK AAEAQIALGR FGEPSEIAAV VAFLASADGH
WVTGQTIEAS GGYKL
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