| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_0769 |
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| Symbol | |
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| ID | 4173947 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 880886 |
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| End bp | 881620 |
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| Gene Length | 735 bp |
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| Protein Length | 244 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 638053771 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_660351 |
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| Protein GI | 109897096 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCTGTAC CTCAAGTCGC GCTAGTCACA GGTGGTTCTA AAGGGATCGG GGCCGCAATA
GTACGTAGAC TATCGACCGA TGGCTTTGCT GTCGCAGTCA ATTATTCCAA AAACCCGGCG
CCCGCAGACG ACTTGGTGAA GGAACTAAAA GATGCGGGAT ACGCGGCGTT AGCGGTTTGT
TGTGATGTAG CGAATAGCGA TGGTGTTAGC CAAATGTTCG ACAAAATAGA AAGCGAACTG
GGTCCTGTGA ATGTACTAAT CAATAATGCA GGGATCATGA AAAATGCGCC CGTGGCACAA
AGTGAAGAGA CGGATTTTGA CCAGCAAATC GCAGTCAATT TAAAAGGCAC ATTTAATACC
CTAAAGCAGG CGGCTAACAG AATGCCAAAT GGGGGCAGAA TTGTGAACCT ATCTACCAGT
GTTGTCGGTT TAAAACTGGA ACAGTACGGT ATCTACGCAG CGACAAAGTC AGCAGTTGAA
ACCATGAGTG CAATTTTAAG CAAAGAGCTG CGCGGCAAGG ACATCACGGT GAATGCGATA
GCACCAGGCC CCACAGCGAC AGACTTATTT TTGGATGGAA AATCGCAAGA ACTGATCGAC
CGCTTGGCTA AAATGAGTCC GTTAGAAAGA TTAGGCACAC CGGAGGATAT TGCCCGTGCG
GTGGCATTTC TAGTTAGCCC AGACGGCGCA TGGATAAATG GCCAAGTACT CAGAGCAAAT
GGCGGTATCG TCTAG
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| Protein sequence | MSVPQVALVT GGSKGIGAAI VRRLSTDGFA VAVNYSKNPA PADDLVKELK DAGYAALAVC
CDVANSDGVS QMFDKIESEL GPVNVLINNA GIMKNAPVAQ SEETDFDQQI AVNLKGTFNT
LKQAANRMPN GGRIVNLSTS VVGLKLEQYG IYAATKSAVE TMSAILSKEL RGKDITVNAI
APGPTATDLF LDGKSQELID RLAKMSPLER LGTPEDIARA VAFLVSPDGA WINGQVLRAN
GGIV
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