| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Acid345_0122 |
|---|
| Symbol | |
|---|
| ID | 4071710 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Candidatus Koribacter versatilis Ellin345 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008009 |
|---|
| Strand | + |
|---|
| Start bp | 130343 |
|---|
| End bp | 131113 |
|---|
| Gene Length | 771 bp |
|---|
| Protein Length | 256 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637982122 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_589201 |
|---|
| Protein GI | 94967153 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 32 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.105219 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCGTTC CCATGTCCTT AAACGGCAAA GTAGCGCTCG TCACCGGAGG CTCACGCGGT
ATCGGCGCCG CCATCGTGCG TCTCTTCGTG CAGGCCGGCG CGAAAGTCGT CTTCAACTAT
CAGCGCGCCG CCGACGCCGC CAACCAGCTC GTCGCAGAAC TCGGTGTTGA CCATTGCTTC
GCGGTCCAGG CTGATCTCAG CAACATCGCC TCGGCTGGGC CGCTGGTGGA AGCCGCCGTC
GCCAAGTTCG GTGCCGTCGA CATCATGGTC GCCAACCACG GCCTGTGGCC GCCCGAAGAT
ATCCCCATCA ACGAGATCCC CGACGAGCAC TGGCGCAACA CGCTCTCCAT CAATCTCGAT
TCCGTCTTCG GCCTCATCAA GCACACCGTC GCGCAAATGA AGCAGCAGGG CCGCGGCGGC
CACATCGTGC TGATCAGTTC CACCTCCGGC CAACGCGGCG AGGCTTTCCA CGTGGACTAT
TCCGCGTCCA AAGGCGCGCT TATCTCCATG ACCAAGGGCC TGGCAACCGA GCTGGCTCGC
TACGGAATCT ACGTGAACGC GGTCGCGCCC GGGTGGGTTA ATACCGATAT GTCCGCGTCA
ACCCTGGTCG ATCCCAAGGC CGACGCCCTG ATCTACCAGC AGATTCCTCT CGGCCGCGTC
GGTAAGCCGG AAGAGATCGC CGCGCCGGTG CTGTTCCTCT GTACCCCGAT GGCCGGCTTC
ATCACCGGCG AAATATTTAA CGTGAACGGT GGGGCCGTGC TCGTCGGATA A
|
|---|
| Protein sequence | MSVPMSLNGK VALVTGGSRG IGAAIVRLFV QAGAKVVFNY QRAADAANQL VAELGVDHCF
AVQADLSNIA SAGPLVEAAV AKFGAVDIMV ANHGLWPPED IPINEIPDEH WRNTLSINLD
SVFGLIKHTV AQMKQQGRGG HIVLISSTSG QRGEAFHVDY SASKGALISM TKGLATELAR
YGIYVNAVAP GWVNTDMSAS TLVDPKADAL IYQQIPLGRV GKPEEIAAPV LFLCTPMAGF
ITGEIFNVNG GAVLVG
|
|---|
| |