| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_2163 |
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| Symbol | |
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| ID | 3906763 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Frankia sp. CcI3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007777 |
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| Strand | + |
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| Start bp | 2532545 |
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| End bp | 2533372 |
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| Gene Length | 828 bp |
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| Protein Length | 275 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 637879496 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_481262 |
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| Protein GI | 86740862 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 29 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.679484 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCTCCG CAGGTGCGCT CGACGGCAAG GTGGCCGTCG TCACCAGTTC CAGCAAGGGG
ATTGGCCGTG CGTTGGCGAC CGGCCTCGGT CAGGCCGGCG CAAACGTGGT CGTCAACTAC
AAGAACGACC GCGCGGGCGC CGAGCAGACG TGCCGGCGTA TACAGGAGGC AGGCGGCATC
GCCGTGGCGG TCGGCGCTGA CGTAGGCGTC CCCGAGGACG CGCAGCGGTT GATCGACACG
GCCCATTGCG AGCTTGGCAG CATCGATGTG CTCGTCAACA ACGTCGCGCA TGTCCGTCTT
GGCCCGGCAC AAGCGACGAC TCTCGAGGAC TGGGGCGACG CCATCAGCAC CAACCTTCGG
GGCGCCTTCC TGACGACCAT AACCGCGGTG GCCGCAATGG GGGAGCGGGG TGGATCTATC
ATCAACATCT CAACCTGTGC CGACACCCTG ATGCTCCGAT ACCACGCCGT CTACACCGCA
TCAAAGGGCA GCCTGGAGGC GATGACACGC CACCTCGCCC TGAGGCTCGC GCCGCGTGTG
CGCGTCAACG CCATCGCGCC CACGGCCACG CGTATGGAGC GCAACTGGCA GGACAACCCC
GACTTCGATC GAAGCTGGAG CGCCGTCATT CCGCTGGGCC GCATGGCGAC GCCCGAGGAC
TACATCGGCC CGCTGGTGTT CCTGGCGTCG GACGCCTCGT CGTTCGTCAC CGGGGAGATC
CTCCACGTCG ACGGGGGCTG GACACTCCAG GGCCCTGCCC CGGACATGCG GCACTACGAC
TTCGAGACGG ACCGGCATCG CGGGCGAGGA GGCCCTGACA GATCTTGA
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| Protein sequence | MTSAGALDGK VAVVTSSSKG IGRALATGLG QAGANVVVNY KNDRAGAEQT CRRIQEAGGI
AVAVGADVGV PEDAQRLIDT AHCELGSIDV LVNNVAHVRL GPAQATTLED WGDAISTNLR
GAFLTTITAV AAMGERGGSI INISTCADTL MLRYHAVYTA SKGSLEAMTR HLALRLAPRV
RVNAIAPTAT RMERNWQDNP DFDRSWSAVI PLGRMATPED YIGPLVFLAS DASSFVTGEI
LHVDGGWTLQ GPAPDMRHYD FETDRHRGRG GPDRS
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