More than 300 homologs were found in PanDaTox collection
for query gene Franean1_0356 on replicon NC_009921
Organism: Frankia sp. EAN1pec



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_009921  Franean1_0356  two component transcriptional regulator  100 
 
 		 357 aa  674    Frankia sp. EAN1pec  Bacteria  normal  0.983136  normal  0.0146672 
 
 
-
 
NC_007777  Francci3_4261  two component transcriptional regulator  69.23 
 
 		 295 aa  127  4.0000000000000003e-28  Frankia sp. CcI3  Bacteria  normal  0.904669  normal  1 
 
 
-
 
NC_010816  BLD_0042  response regulator  25.91 
 
 		 240 aa  98.6  1e-19  Bifidobacterium longum DJO10A  Bacteria  normal  0.382747  n/a   
 
 
-
 
NC_010001  Cphy_0154  two component transcriptional regulator  25.81 
 
 		 238 aa  90.1  6e-17  Clostridium phytofermentans ISDg  Bacteria  normal  0.644268  n/a   
 
 
-
 
NC_009380  Strop_0290  two component transcriptional regulator  38.36 
 
 		 251 aa  85.1  0.000000000000002  Salinispora tropica CNB-440  Bacteria  normal  1  normal  0.552765 
 
 
-
 
NC_013510  Tcur_0700  two component transcriptional regulator, winged helix family  39.53 
 
 		 226 aa  81.6  0.00000000000002  Thermomonospora curvata DSM 43183  Bacteria  normal  0.768939  n/a   
 
 
-
 
NC_008578  Acel_0088  two component transcriptional regulator  50.62 
 
 		 228 aa  81.3  0.00000000000002  Acidothermus cellulolyticus 11B  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009953  Sare_0334  two component transcriptional regulator  37.76 
 
 		 241 aa  81.6  0.00000000000002  Salinispora arenicola CNS-205  Bacteria  normal  1  normal  0.0100122 
 
 
-
 
NC_014211  Ndas_5390  two component transcriptional regulator, winged helix family  38.64 
 
 		 243 aa  81.3  0.00000000000002  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008531  LEUM_1950  DNA-binding response regulator  26.35 
 
 		 235 aa  80.9  0.00000000000003  Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293  Bacteria  normal  0.100456  n/a   
 
 
-
 
NC_013131  Caci_8215  two component transcriptional regulator, winged helix family  53.33 
 
 		 226 aa  80.5  0.00000000000004  Catenulispora acidiphila DSM 44928  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011830  Dhaf_1665  two component transcriptional regulator, winged helix family  22.09 
 
 		 232 aa  79.7  0.00000000000007  Desulfitobacterium hafniense DCB-2  Bacteria  normal  1  n/a   
 
 
-
 
NC_008528  OEOE_0105  DNA-binding response regulator  28.16 
 
 		 237 aa  79  0.0000000000001  Oenococcus oeni PSU-1  Bacteria  normal  1  n/a   
 
 
-
 
NC_013595  Sros_8335  response regulator receiver protein  53.01 
 
 		 239 aa  78.2  0.0000000000002  Streptosporangium roseum DSM 43021  Bacteria  normal  1  normal  1 
 
 
-
 
NC_014165  Tbis_0499  winged helix family two component transcriptional regulator  51.9 
 
 		 229 aa  78.6  0.0000000000002  Thermobispora bispora DSM 43833  Bacteria  normal  1  normal  1 
 
 
-
 
NC_012803  Mlut_03750  PhoP-like protein  37.12 
 
 		 226 aa  77.8  0.0000000000003  Micrococcus luteus NCTC 2665  Bacteria  normal  0.181369  n/a   
 
 
-
 
NC_010718  Nther_0984  two component transcriptional regulator, winged helix family  22.63 
 
 		 246 aa  77  0.0000000000004  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  1  normal  0.0723779 
 
 
-
 
NC_010581  Bind_2236  two component transcriptional regulator  34.59 
 
 		 227 aa  77.4  0.0000000000004  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.214459  normal  1 
 
 
-
 
NC_013521  Sked_31880  response regulator with CheY-like receiver domain and winged-helix DNA-binding domain  49.43 
 
 		 231 aa  77  0.0000000000005  Sanguibacter keddieii DSM 10542  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009921  Franean1_5311  two component transcriptional regulator  26.89 
 
 		 246 aa  76.3  0.0000000000007  Frankia sp. EAN1pec  Bacteria  normal  0.554395  normal  0.310406 
 
 
-
 
NC_013595  Sros_0961  response regulator receiver protein  38.46 
 
 		 229 aa  76.3  0.0000000000007  Streptosporangium roseum DSM 43021  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013757  Gobs_4602  two component transcriptional regulator, winged helix family  51.9 
 
 		 226 aa  76.3  0.0000000000007  Geodermatophilus obscurus DSM 43160  Bacteria  normal  1  n/a   
 
 
-
 
NC_013525  Tter_1135  two component transcriptional regulator, winged helix family  25 
 
 		 227 aa  76.3  0.0000000000008  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_013530  Xcel_2969  two component transcriptional regulator, winged helix family  55.26 
 
 		 246 aa  75.9  0.000000000001  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  1  n/a   
 
 
-
 
NC_007333  Tfu_2910  response regulator receiver  37.31 
 
 		 230 aa  75.5  0.000000000001  Thermobifida fusca YX  Bacteria  normal  1  n/a   
 
 
-
 
NC_008541  Arth_0724  two component transcriptional regulator  47.44 
 
 		 226 aa  75.5  0.000000000001  Arthrobacter sp. FB24  Bacteria  normal  1  n/a   
 
 
-
 
NC_008820  P9303_06261  two-component response regulator  25.49 
 
 		 240 aa  75.5  0.000000000001  Prochlorococcus marinus str. MIT 9303  Bacteria  n/a    normal  0.0419163 
 
 
-
 
NC_009012  Cthe_1394  two component transcriptional regulator  21.43 
 
 		 236 aa  75.9  0.000000000001  Clostridium thermocellum ATCC 27405  Bacteria  decreased coverage  0.00000024965  n/a   
 
 
-
 
NC_009675  Anae109_0415  two component transcriptional regulator  36.15 
 
 		 231 aa  75.5  0.000000000001  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  1  normal  0.777838 
 
 
-
 
NC_011886  Achl_0850  two component transcriptional regulator, winged helix family  50.67 
 
 		 226 aa  75.9  0.000000000001  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal  1 
 
 
-
 
NC_013385  Adeg_1011  two component transcriptional regulator, winged helix family  33.82 
 
 		 231 aa  73.9  0.000000000004  Ammonifex degensii KC4  Bacteria  normal  1  n/a   
 
 
-
 
NC_009675  Anae109_3104  two component transcriptional regulator  40 
 
 		 233 aa  73.6  0.000000000005  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.317177  normal  1 
 
 
-
 
NC_008699  Noca_4046  response regulator receiver  50.67 
 
 		 225 aa  73.6  0.000000000005  Nocardioides sp. JS614  Bacteria  normal  1  n/a   
 
 
-
 
NC_014210  Ndas_4322  two component transcriptional regulator, winged helix family  47.13 
 
 		 231 aa  73.6  0.000000000006  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  1  normal  1 
 
 
-
 
NC_002977  MCA3105  DNA-binding response regulator PhoB  32.26 
 
 		 232 aa  73.2  0.000000000007  Methylococcus capsulatus str. Bath  Bacteria  normal  1  n/a   
 
 
-
 
NC_013216  Dtox_0488  two component transcriptional regulator, winged helix family  22.87 
 
 		 235 aa  73.2  0.000000000007  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  1  hitchhiker  0.00220414 
 
 
-
 
NC_012034  Athe_0080  two component transcriptional regulator, winged helix family  23.62 
 
 		 230 aa  73.2  0.000000000007  Anaerocellum thermophilum DSM 6725  Bacteria  normal  1  n/a   
 
 
-
 
NC_013205  Aaci_2570  two component transcriptional regulator, winged helix family  35.07 
 
 		 239 aa  72.8  0.000000000009  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  1  n/a   
 
 
-
 
NC_013526  Tter_2094  two component transcriptional regulator, winged helix family  27.91 
 
 		 231 aa  72.4  0.00000000001  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  1  n/a   
 
 
-
 
NC_013093  Amir_6749  two component transcriptional regulator, winged helix family  35.88 
 
 		 226 aa  72  0.00000000001  Actinosynnema mirum DSM 43827  Bacteria  normal  0.290774  n/a   
 
 
-
 
NC_011666  Msil_0189  two component transcriptional regulator, winged helix family  33.59 
 
 		 231 aa  72.8  0.00000000001  Methylocella silvestris BL2  Bacteria  n/a    normal  0.364869 
 
 
-
 
NC_013174  Jden_2083  two component transcriptional regulator, winged helix family  35.66 
 
 		 237 aa  72.4  0.00000000001  Jonesia denitrificans DSM 20603  Bacteria  normal  0.873655  normal  1 
 
 
-
 
NC_011830  Dhaf_1587  two component transcriptional regulator, winged helix family  29.94 
 
 		 231 aa  72.4  0.00000000001  Desulfitobacterium hafniense DCB-2  Bacteria  normal  1  n/a   
 
 
-
 
NC_008726  Mvan_0831  two component transcriptional regulator  46.05 
 
 		 228 aa  72.8  0.00000000001  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.310785  normal  1 
 
 
-
 
NC_013947  Snas_0580  two component transcriptional regulator, winged helix family  48.05 
 
 		 226 aa  71.2  0.00000000002  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007492  Pfl01_5606  two component transcriptional regulator  32.81 
 
 		 229 aa  71.2  0.00000000002  Pseudomonas fluorescens Pf0-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013131  Caci_0904  two component transcriptional regulator, winged helix family  26.28 
 
 		 254 aa  71.2  0.00000000002  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.936287  normal  0.32173 
 
 
-
 
NC_014158  Tpau_0654  two component transcriptional regulator, winged helix family  51.32 
 
 		 229 aa  71.6  0.00000000002  Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.200991  n/a   
 
 
-
 
NC_007760  Adeh_4009  two component transcriptional regulator  36.15 
 
 		 230 aa  71.6  0.00000000002  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  decreased coverage  0.00751412  n/a   
 
 
-
 
NC_007794  Saro_0386  two component transcriptional regulator  26.81 
 
 		 229 aa  71.6  0.00000000002  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  1  n/a   
 
 
-
 
NC_009921  Franean1_6145  two component transcriptional regulator  46.99 
 
 		 228 aa  71.6  0.00000000002  Frankia sp. EAN1pec  Bacteria  normal  1  normal  0.788201 
 
 
-
 
NC_008146  Mmcs_0661  two component transcriptional regulator  46.05 
 
 		 228 aa  72  0.00000000002  Mycobacterium sp. MCS  Bacteria  normal  1  n/a   
 
 
-
 
NC_010571  Oter_2550  two component transcriptional regulator  36.43 
 
 		 228 aa  71.6  0.00000000002  Opitutus terrae PB90-1  Bacteria  normal  1  normal  0.0605198 
 
 
-
 
NC_009719  Plav_0928  two component transcriptional regulator  33.58 
 
 		 223 aa  71.6  0.00000000002  Parvibaculum lavamentivorans DS-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013159  Svir_02690  response regulator with CheY-like receiver domain protein and winged-helix DNA-binding domain protein  48.72 
 
 		 229 aa  72  0.00000000002  Saccharomonospora viridis DSM 43017  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009565  TBFG_10499  two component system sensor transduction protein regX3  47.37 
 
 		 227 aa  72  0.00000000002  Mycobacterium tuberculosis F11  Bacteria  decreased coverage  2.46064e-66  normal  1 
 
 
-
 
NC_008705  Mkms_0674  two component transcriptional regulator  46.05 
 
 		 228 aa  72  0.00000000002  Mycobacterium sp. KMS  Bacteria  normal  1  normal  0.850641 
 
 
-
 
NC_009077  Mjls_0654  two component transcriptional regulator  46.05 
 
 		 228 aa  72  0.00000000002  Mycobacterium sp. JLS  Bacteria  normal  1  normal  0.682961 
 
 
-
 
NC_013124  Afer_0200  two component transcriptional regulator, winged helix family  47.5 
 
 		 242 aa  70.9  0.00000000003  Acidimicrobium ferrooxidans DSM 10331  Bacteria  normal  0.0955644  n/a   
 
 
-
 
NC_007643  Rru_A0603  two component transcriptional regulator  38.53 
 
 		 233 aa  71.2  0.00000000003  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.0519325  n/a   
 
 
-
 
NC_013441  Gbro_0997  response regulator receiver  47.37 
 
 		 228 aa  70.9  0.00000000003  Gordonia bronchialis DSM 43247  Bacteria  normal  1  n/a   
 
 
-
 
NC_012669  Bcav_3167  two component transcriptional regulator, winged helix family  43.62 
 
 		 218 aa  71.2  0.00000000003  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.436774  normal  0.0676898 
 
 
-
 
NC_011891  A2cp1_3106  two component transcriptional regulator, winged helix family  30.92 
 
 		 234 aa  70.5  0.00000000004  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  1  n/a   
 
 
-
 
NC_013124  Afer_0241  putative two component transcriptional regulator, winged helix family  31.78 
 
 		 217 aa  70.5  0.00000000004  Acidimicrobium ferrooxidans DSM 10331  Bacteria  normal  1  n/a   
 
 
-
 
NC_008254  Meso_3116  two component transcriptional regulator  37.04 
 
 		 229 aa  70.9  0.00000000004  Chelativorans sp. BNC1  Bacteria  normal  0.202822  n/a   
 
 
-
 
NC_011898  Ccel_2106  two component transcriptional regulator, winged helix family  30.15 
 
 		 238 aa  70.5  0.00000000004  Clostridium cellulolyticum H10  Bacteria  normal  1  n/a   
 
 
-
 
NC_010320  Teth514_2216  two component transcriptional regulator  42.47 
 
 		 224 aa  70.9  0.00000000004  Thermoanaerobacter sp. X514  Bacteria  normal  1  n/a   
 
 
-
 
NC_009012  Cthe_1600  two component transcriptional regulator  40.96 
 
 		 224 aa  70.5  0.00000000004  Clostridium thermocellum ATCC 27405  Bacteria  hitchhiker  0.000237714  n/a   
 
 
-
 
NC_009380  Strop_0967  response regulator receiver  28.57 
 
 		 229 aa  70.5  0.00000000004  Salinispora tropica CNB-440  Bacteria  normal  0.359698  normal  0.873584 
 
 
-
 
NC_011899  Hore_21640  two component transcriptional regulator, winged helix family  39.29 
 
 		 226 aa  70.1  0.00000000005  Halothermothrix orenii H 168  Bacteria  hitchhiker  0.0000000000176926  n/a   
 
 
-
 
NC_010816  BLD_1073  putative response regulator  31.3 
 
 		 234 aa  70.5  0.00000000005  Bifidobacterium longum DJO10A  Bacteria  normal  1  n/a   
 
 
-
 
NC_013235  Namu_4929  two component transcriptional regulator, winged helix family  48.75 
 
 		 226 aa  70.5  0.00000000005  Nakamurella multipartita DSM 44233  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011989  Avi_1358  two component response regulator  32.84 
 
 		 224 aa  70.1  0.00000000005  Agrobacterium vitis S4  Bacteria  normal  0.333715  n/a   
 
 
-
 
NC_013441  Gbro_4088  response regulator receiver  25 
 
 		 231 aa  70.1  0.00000000005  Gordonia bronchialis DSM 43247  Bacteria  normal  1  n/a   
 
 
-
 
NC_004578  PSPTO_5477  phosphate regulon transcriptional regulatory protein PhoB  31.54 
 
 		 229 aa  70.1  0.00000000006  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  1  n/a   
 
 
-
 
NC_006368  lpp1255  hypothetical protein  39.39 
 
 		 225 aa  69.7  0.00000000006  Legionella pneumophila str. Paris  Bacteria  n/a    n/a   
 
 
-
 
NC_006369  lpl1254  hypothetical protein  39.39 
 
 		 225 aa  69.7  0.00000000006  Legionella pneumophila str. Lens  Bacteria  n/a    n/a   
 
 
-
 
NC_007492  Pfl01_1542  response regulator receiver domain-containing protein  35.77 
 
 		 567 aa  70.1  0.00000000006  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.3365  normal  0.98827 
 
 
-
 
NC_007643  Rru_A2913  two component transcriptional regulator  34.59 
 
 		 227 aa  70.1  0.00000000006  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.0379396  n/a   
 
 
-
 
NC_011146  Gbem_1846  two component transcriptional regulator, winged helix family  38.1 
 
 		 226 aa  70.1  0.00000000006  Geobacter bemidjiensis Bem  Bacteria  normal  1  n/a   
 
 
-
 
NC_009513  Lreu_0019  two component transcriptional regulator  25.99 
 
 		 235 aa  70.1  0.00000000006  Lactobacillus reuteri DSM 20016  Bacteria  normal  1  n/a   
 
 
-
 
NC_007005  Psyr_5032  response regulator receiver:transcriptional regulatory protein, C-terminal  31.5 
 
 		 229 aa  69.7  0.00000000007  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  1  normal  0.330128 
 
 
-
 
NC_010184  BcerKBAB4_5259  two component transcriptional regulator  35.16 
 
 		 235 aa  69.7  0.00000000007  Bacillus weihenstephanensis KBAB4  Bacteria  hitchhiker  0.000559572  n/a   
 
 
-
 
NC_009338  Mflv_0082  two component transcriptional regulator  45 
 
 		 228 aa  69.7  0.00000000007  Mycobacterium gilvum PYR-GCK  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013174  Jden_1871  two component transcriptional regulator, winged helix family  32.59 
 
 		 226 aa  69.7  0.00000000008  Jonesia denitrificans DSM 20603  Bacteria  normal  0.105791  normal  0.266081 
 
 
-
 
NC_007520  Tcr_0541  two component transcriptional regulator  28.41 
 
 		 230 aa  69.7  0.00000000008  Thiomicrospira crunogena XCL-2  Bacteria  normal  1  n/a   
 
 
-
 
NC_007948  Bpro_0543  two component transcriptional regulator  27.47 
 
 		 241 aa  69.7  0.00000000008  Polaromonas sp. JS666  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009439  Pmen_4408  two component transcriptional regulator  32.26 
 
 		 229 aa  69.7  0.00000000008  Pseudomonas mendocina ymp  Bacteria  normal  1  normal  0.0897949 
 
 
-
 
NC_013169  Ksed_03700  response regulator with CheY-like receiver domain and winged-helix DNA-binding domain  34.38 
 
 		 226 aa  69.3  0.00000000009  Kytococcus sedentarius DSM 20547  Bacteria  normal  1  normal  0.132847 
 
 
-
 
NC_011891  A2cp1_4151  two component transcriptional regulator, winged helix family  34.62 
 
 		 230 aa  69.3  0.00000000009  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  1  n/a   
 
 
-
 
NC_011145  AnaeK_3000  two component transcriptional regulator, winged helix family  30.53 
 
 		 234 aa  69.3  0.00000000009  Anaeromyxobacter sp. K  Bacteria  normal  1  n/a   
 
 
-
 
NC_007406  Nwi_0511  phosphate regulon transcriptional regulatory protein phoB  38.53 
 
 		 234 aa  68.6  0.0000000001  Nitrobacter winogradskyi Nb-255  Bacteria  normal  1  normal  0.473137 
 
 
-
 
NC_009656  PSPA7_6138  two-component response regulator PhoB  31.5 
 
 		 229 aa  68.9  0.0000000001  Pseudomonas aeruginosa PA7  Bacteria  normal  1  n/a   
 
 
-
 
NC_014210  Ndas_4793  two component transcriptional regulator, winged helix family  45.78 
 
 		 219 aa  69.3  0.0000000001  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  1  normal  0.732153 
 
 
-
 
NC_011146  Gbem_1865  two component transcriptional regulator, winged helix family  38.1 
 
 		 226 aa  69.3  0.0000000001  Geobacter bemidjiensis Bem  Bacteria  normal  1  n/a   
 
 
-
 
NC_010172  Mext_0329  response regulator receiver  33.79 
 
 		 232 aa  68.9  0.0000000001  Methylobacterium extorquens PA1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008463  PA14_70750  two-component response regulator PhoB  31.5 
 
 		 229 aa  68.9  0.0000000001  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011145  AnaeK_4125  two component transcriptional regulator, winged helix family  34.62 
 
 		 230 aa  68.9  0.0000000001  Anaeromyxobacter sp. K  Bacteria  normal  0.125271  n/a   
 
 
-
 
NC_009674  Bcer98_4006  two component transcriptional regulator  35.16 
 
 		 235 aa  68.6  0.0000000001  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  0.010356  n/a   
 
 
-
 
NC_014151  Cfla_2389  two component transcriptional regulator, winged helix family  34.59 
 
 		 240 aa  69.3  0.0000000001  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.0687652  decreased coverage  0.0000973314 
 
 
-
 
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