More than 300 homologs were found in PanDaTox collection
for query gene Avi_4353 on replicon NC_011989
Organism: Agrobacterium vitis S4



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011989  Avi_4353  methyl-accepting chemotaxis protein  100 
 
 
575 aa  1161    Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_012850  Rleg_3566  putative chemotaxis sensory transducer protein  40.48 
 
 
580 aa  406  1.0000000000000001e-112  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.81094  normal  0.0204442 
 
 
-
 
NC_011369  Rleg2_3267  putative methyl-accepting chemotaxis sensory transducer  40.66 
 
 
581 aa  408  1.0000000000000001e-112  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.435218 
 
 
-
 
NC_010333  Caul_5394  putative methyl-accepting chemotaxis sensory transducer  37.88 
 
 
585 aa  352  8e-96  Caulobacter sp. K31  Bacteria  normal  0.0438487  normal 
 
 
-
 
NC_010338  Caul_0619  hypothetical protein  31.35 
 
 
579 aa  212  1e-53  Caulobacter sp. K31  Bacteria  normal  normal 
 
 
-
 
NC_007643  Rru_A1396  methyl-accepting chemotaxis sensory transducer  27.34 
 
 
583 aa  154  5e-36  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_2430  methyl-accepting chemotaxis sensory transducer  24.69 
 
 
625 aa  93.2  1e-17  Geobacter metallireducens GS-15  Bacteria  hitchhiker  0.00134328  normal 
 
 
-
 
NC_002939  GSU1287  methyl accepting chemotaxis protein, putative  22.99 
 
 
627 aa  80.9  0.00000000000006  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_007925  RPC_4667  methyl-accepting chemotaxis sensory transducer  24.56 
 
 
590 aa  80.5  0.00000000000007  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal  0.304866 
 
 
-
 
NC_011769  DvMF_0469  methyl-accepting chemotaxis sensory transducer  23.08 
 
 
608 aa  67  0.0000000008  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.149565 
 
 
-
 
NC_011004  Rpal_0139  putative methyl-accepting chemotaxis sensory transducer  22.08 
 
 
569 aa  66.6  0.000000001  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.287103  n/a   
 
 
-
 
NC_010814  Glov_1741  methyl-accepting chemotaxis sensory transducer  20.95 
 
 
597 aa  64.3  0.000000006  Geobacter lovleyi SZ  Bacteria  normal  0.049484  n/a   
 
 
-
 
NC_013173  Dbac_1419  methyl-accepting chemotaxis sensory transducer  22.06 
 
 
641 aa  64.3  0.000000006  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_007519  Dde_2108  methyl-accepting chemotaxis sensory transducer  21.76 
 
 
572 aa  63.9  0.000000008  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  0.798353  n/a   
 
 
-
 
NC_009485  BBta_6729  methyl-accepting chemotaxis sensory transducer  24.36 
 
 
577 aa  63.5  0.00000001  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.340695  normal 
 
 
-
 
NC_007643  Rru_A2078  chemotaxis sensory transducer  23.85 
 
 
561 aa  62.8  0.00000002  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.960991  n/a   
 
 
-
 
NC_008609  Ppro_1604  methyl-accepting chemotaxis sensory transducer  20.91 
 
 
617 aa  62  0.00000003  Pelobacter propionicus DSM 2379  Bacteria  hitchhiker  0.00349401  n/a   
 
 
-
 
NC_010483  TRQ2_1321  methyl-accepting chemotaxis sensory transducer  24.5 
 
 
566 aa  60.8  0.00000006  Thermotoga sp. RQ2  Bacteria  decreased coverage  0.00082247  n/a   
 
 
-
 
NC_010003  Pmob_0137  methyl-accepting chemotaxis sensory transducer  23.24 
 
 
748 aa  60.5  0.00000009  Petrotoga mobilis SJ95  Bacteria  normal  n/a   
 
 
-
 
NC_007643  Rru_A2076  chemotaxis sensory transducer  23.39 
 
 
561 aa  60.1  0.0000001  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.723039  n/a   
 
 
-
 
NC_009483  Gura_2996  methyl-accepting chemotaxis sensory transducer  22.03 
 
 
637 aa  59.7  0.0000001  Geobacter uraniireducens Rf4  Bacteria  hitchhiker  0.00186457  n/a   
 
 
-
 
NC_010003  Pmob_0837  methyl-accepting chemotaxis sensory transducer  23.24 
 
 
667 aa  59.7  0.0000001  Petrotoga mobilis SJ95  Bacteria  normal  n/a   
 
 
-
 
NC_010003  Pmob_0509  methyl-accepting chemotaxis sensory transducer  23.24 
 
 
666 aa  58.9  0.0000002  Petrotoga mobilis SJ95  Bacteria  hitchhiker  0.0000844427  n/a   
 
 
-
 
NC_010003  Pmob_0228  methyl-accepting chemotaxis sensory transducer  23.24 
 
 
667 aa  59.3  0.0000002  Petrotoga mobilis SJ95  Bacteria  normal  n/a   
 
 
-
 
NC_009486  Tpet_1365  methyl-accepting chemotaxis sensory transducer  24.88 
 
 
566 aa  59.3  0.0000002  Thermotoga petrophila RKU-1  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_6993  putative methyl-accepting chemotaxis receptor/sensory transducer  26.83 
 
 
697 aa  58.5  0.0000003  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_010003  Pmob_0496  methyl-accepting chemotaxis sensory transducer  23.24 
 
 
670 aa  58.9  0.0000003  Petrotoga mobilis SJ95  Bacteria  normal  0.474098  n/a   
 
 
-
 
NC_012918  GM21_2622  methyl-accepting chemotaxis sensory transducer  22.55 
 
 
603 aa  55.8  0.000002  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_011004  Rpal_5144  methyl-accepting chemotaxis sensory transducer  27.35 
 
 
686 aa  55.5  0.000003  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_011004  Rpal_2091  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  26.42 
 
 
559 aa  54.3  0.000006  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.382764  n/a   
 
 
-
 
NC_010003  Pmob_1607  methyl-accepting chemotaxis sensory transducer  22.82 
 
 
668 aa  54.3  0.000007  Petrotoga mobilis SJ95  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_5211  methyl-accepting chemotaxis sensory transducer  23.33 
 
 
445 aa  53.1  0.00001  Methylobacterium sp. 4-46  Bacteria  normal  0.351267  normal  0.0732889 
 
 
-
 
NC_011830  Dhaf_2082  methyl-accepting chemotaxis sensory transducer  25.47 
 
 
568 aa  52.4  0.00002  Desulfitobacterium hafniense DCB-2  Bacteria  hitchhiker  0.00000211004  n/a   
 
 
-
 
NC_007778  RPB_4286  methyl-accepting chemotaxis sensory transducer  23.53 
 
 
563 aa  52.4  0.00002  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_010172  Mext_0809  chemotaxis sensory transducer  21.4 
 
 
717 aa  52.8  0.00002  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_008751  Dvul_1542  methyl-accepting chemotaxis sensory transducer  20.87 
 
 
580 aa  52  0.00003  Desulfovibrio vulgaris DP4  Bacteria  normal  normal 
 
 
-
 
NC_007643  Rru_A0718  chemotaxis sensory transducer  23.61 
 
 
669 aa  52  0.00003  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.845917  n/a   
 
 
-
 
NC_010511  M446_4355  methyl-accepting chemotaxis sensory transducer  24.63 
 
 
425 aa  52  0.00003  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_007925  RPC_3475  methyl-accepting chemotaxis sensory transducer  23.08 
 
 
649 aa  52  0.00003  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_011757  Mchl_0752  methyl-accepting chemotaxis sensory transducer  21.66 
 
 
716 aa  51.6  0.00003  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.713683  normal 
 
 
-
 
NC_011004  Rpal_4974  methyl-accepting chemotaxis sensory transducer  24.85 
 
 
440 aa  51.6  0.00004  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.178259  n/a   
 
 
-
 
NC_009616  Tmel_0749  methyl-accepting chemotaxis sensory transducer  26.09 
 
 
657 aa  51.6  0.00004  Thermosipho melanesiensis BI429  Bacteria  normal  0.388814  n/a   
 
 
-
 
NC_009664  Krad_1930  methyl-accepting chemotaxis sensory transducer  26.47 
 
 
517 aa  51.2  0.00005  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.0153757  normal 
 
 
-
 
NC_007643  Rru_A0262  chemotaxis sensory transducer  22.58 
 
 
442 aa  51.2  0.00005  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.244306  n/a   
 
 
-
 
NC_007778  RPB_3492  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  28.81 
 
 
559 aa  51.2  0.00005  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.948629  normal 
 
 
-
 
NC_007925  RPC_2846  methyl-accepting chemotaxis sensory transducer  26.03 
 
 
565 aa  51.2  0.00005  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.430745  normal 
 
 
-
 
NC_009485  BBta_0644  putative methyl-accepting chemotaxis receptor/sensory transducer  19.51 
 
 
565 aa  50.8  0.00006  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_4464  methyl-accepting chemotaxis sensory transducer  23.35 
 
 
573 aa  50.8  0.00006  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.610641  normal  0.757777 
 
 
-
 
NC_008752  Aave_2486  methyl-accepting chemotaxis sensory transducer  32.14 
 
 
504 aa  50.8  0.00007  Acidovorax citrulli AAC00-1  Bacteria  normal  0.961139  normal  0.110025 
 
 
-
 
NC_011146  Gbem_1591  methyl-accepting chemotaxis sensory transducer  23 
 
 
603 aa  50.8  0.00007  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_011883  Ddes_0166  methyl-accepting chemotaxis sensory transducer with Cache sensor  30.36 
 
 
601 aa  50.4  0.00008  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_02220  putative chemotaxis transducer  25.54 
 
 
679 aa  50.4  0.00008  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.329962  normal 
 
 
-
 
NC_007406  Nwi_2996  methyl-accepting chemotaxis protein  19.25 
 
 
698 aa  50.4  0.00009  Nitrobacter winogradskyi Nb-255  Bacteria  normal  normal 
 
 
-
 
NC_013173  Dbac_2858  methyl-accepting chemotaxis sensory transducer  22 
 
 
687 aa  50.4  0.00009  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_009074  BURPS668_2698  methyl-accepting chemotaxis protein I  25.99 
 
 
640 aa  50.1  0.0001  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_002947  PP_3557  methyl-accepting chemotaxis transducer  27.27 
 
 
714 aa  49.7  0.0001  Pseudomonas putida KT2440  Bacteria  normal  0.386044  normal 
 
 
-
 
NC_009512  Pput_2217  methyl-accepting chemotaxis sensory transducer  27.27 
 
 
714 aa  49.7  0.0001  Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_0575  methyl-accepting chemotaxis sensory transducer  26.54 
 
 
681 aa  49.7  0.0001  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_007434  BURPS1710b_2819  methyl-accepting chemotaxis protein I  25.99 
 
 
640 aa  50.1  0.0001  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_008599  CFF8240_0322  methyl-accepting chemotaxis protein  25.3 
 
 
432 aa  50.1  0.0001  Campylobacter fetus subsp. fetus 82-40  Bacteria  normal  n/a   
 
 
-
 
NC_007643  Rru_A1177  chemotaxis sensory transducer  23.53 
 
 
469 aa  50.4  0.0001  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.5025  n/a   
 
 
-
 
NC_007643  Rru_A3665  chemotaxis sensory transducer  24.53 
 
 
567 aa  50.4  0.0001  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_0914  methyl-accepting chemotaxis sensory transducer  28.3 
 
 
689 aa  50.1  0.0001  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.497103 
 
 
-
 
NC_007958  RPD_1025  methyl-accepting chemotaxis sensory transducer  28.74 
 
 
681 aa  50.1  0.0001  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_008345  Sfri_1416  methyl-accepting chemotaxis sensory transducer  23.57 
 
 
481 aa  49.7  0.0001  Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.493152  n/a   
 
 
-
 
NC_009438  Sputcn32_0661  methyl-accepting chemotaxis sensory transducer  25.66 
 
 
435 aa  49.7  0.0001  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_009080  BMA10247_1709  putative methyl-accepting chemotaxis protein  25.99 
 
 
640 aa  49.7  0.0002  Burkholderia mallei NCTC 10247  Bacteria  normal  0.142382  n/a   
 
 
-
 
NC_008836  BMA10229_A2892  putative methyl-accepting chemotaxis protein  25.99 
 
 
631 aa  49.3  0.0002  Burkholderia mallei NCTC 10229  Bacteria  normal  0.0367136  n/a   
 
 
-
 
NC_006348  BMA0617  methyl-accepting chemotaxis protein, putative  25.99 
 
 
640 aa  49.7  0.0002  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_013173  Dbac_1148  methyl-accepting chemotaxis sensory transducer with Cache sensor  22.4 
 
 
650 aa  49.7  0.0002  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.605213  n/a   
 
 
-
 
NC_007643  Rru_A1160  chemotaxis sensory transducer  22.03 
 
 
559 aa  48.9  0.0002  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_007643  Rru_A2460  chemotaxis sensory transducer  20.67 
 
 
565 aa  48.9  0.0002  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_007643  Rru_A3037  chemotaxis sensory transducer  26.38 
 
 
568 aa  49.3  0.0002  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_011004  Rpal_1871  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  23.53 
 
 
716 aa  49.3  0.0002  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007925  RPC_3476  methyl-accepting chemotaxis sensory transducer  21.82 
 
 
641 aa  49.3  0.0002  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.640734  normal 
 
 
-
 
NC_009076  BURPS1106A_2755  methyl-accepting chemotaxis protein  25.99 
 
 
640 aa  49.7  0.0002  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_009831  Ssed_1066  methyl-accepting chemotaxis sensory transducer  28.83 
 
 
705 aa  49.3  0.0002  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_008785  BMASAVP1_A2395  putative methyl-accepting chemotaxis protein  25.99 
 
 
640 aa  49.7  0.0002  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_008044  TM1040_0476  methyl-accepting chemotaxis sensory transducer  27.62 
 
 
589 aa  48.9  0.0002  Ruegeria sp. TM1040  Bacteria  normal  normal 
 
 
-
 
NC_011883  Ddes_0063  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  28.68 
 
 
522 aa  49.3  0.0002  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_30820  putative methyl-accepting chemotaxis transducer  23.7 
 
 
535 aa  49.3  0.0002  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.0142633  hitchhiker  0.0000000000042709 
 
 
-
 
NC_009616  Tmel_0046  methyl-accepting chemotaxis sensory transducer  23.44 
 
 
563 aa  48.5  0.0003  Thermosipho melanesiensis BI429  Bacteria  normal  n/a   
 
 
-
 
NC_009457  VC0395_A2016  methyl-accepting chemotaxis protein  27.71 
 
 
433 aa  48.5  0.0003  Vibrio cholerae O395  Bacteria  hitchhiker  0.0000104003  n/a   
 
 
-
 
NC_013456  VEA_002906  methyl-accepting chemotaxis protein  24.06 
 
 
678 aa  48.5  0.0003  Vibrio sp. Ex25  Bacteria  normal  0.816112  n/a   
 
 
-
 
NC_009665  Shew185_1187  methyl-accepting chemotaxis sensory transducer  29.47 
 
 
706 aa  48.5  0.0003  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_007954  Sden_1091  chemotaxis sensory transducer  23.33 
 
 
620 aa  48.5  0.0003  Shewanella denitrificans OS217  Bacteria  normal  0.0174472  n/a   
 
 
-
 
NC_011883  Ddes_0349  methyl-accepting chemotaxis sensory transducer  29.13 
 
 
585 aa  48.5  0.0003  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  normal  n/a   
 
 
-
 
NC_009997  Sbal195_1220  methyl-accepting chemotaxis sensory transducer  29.47 
 
 
706 aa  48.5  0.0003  Shewanella baltica OS195  Bacteria  normal  normal  0.46231 
 
 
-
 
NC_011663  Sbal223_3170  methyl-accepting chemotaxis sensory transducer  29.47 
 
 
706 aa  48.5  0.0003  Shewanella baltica OS223  Bacteria  normal  normal  0.942476 
 
 
-
 
NC_009485  BBta_4246  putative methyl-accepting chemotaxis receptor/sensory transducer protein  23.85 
 
 
689 aa  48.5  0.0003  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.456046  normal  0.433672 
 
 
-
 
NC_010003  Pmob_0861  methyl-accepting chemotaxis sensory transducer  30.09 
 
 
689 aa  48.5  0.0003  Petrotoga mobilis SJ95  Bacteria  normal  0.63678  n/a   
 
 
-
 
NC_012039  Cla_1204  MCP-domain signal transduction protein  24.79 
 
 
431 aa  48.1  0.0004  Campylobacter lari RM2100  Bacteria  normal  0.302368  n/a   
 
 
-
 
NC_010501  PputW619_2074  methyl-accepting chemotaxis sensory transducer  27.01 
 
 
714 aa  48.1  0.0004  Pseudomonas putida W619  Bacteria  normal  0.203311  normal 
 
 
-
 
NC_009616  Tmel_1120  methyl-accepting chemotaxis sensory transducer  26.32 
 
 
664 aa  48.1  0.0004  Thermosipho melanesiensis BI429  Bacteria  hitchhiker  0.00177625  n/a   
 
 
-
 
NC_010511  M446_6902  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  29.85 
 
 
491 aa  48.1  0.0004  Methylobacterium sp. 4-46  Bacteria  normal  0.694582  normal 
 
 
-
 
NC_009456  VC0395_0070  methyl-accepting chemotaxis protein  30.34 
 
 
547 aa  48.5  0.0004  Vibrio cholerae O395  Bacteria  normal  0.740118  n/a   
 
 
-
 
NC_007643  Rru_A0568  chemotaxis sensory transducer  24.32 
 
 
662 aa  48.1  0.0004  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_6268  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  28.95 
 
 
559 aa  48.1  0.0004  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.0690634  normal 
 
 
-
 
NC_007912  Sde_2316  putative methyl-accepting chemotaxis sensory transducer  25.32 
 
 
548 aa  48.1  0.0004  Saccharophagus degradans 2-40  Bacteria  normal  normal  0.0208981 
 
 
-
 
NC_013521  Sked_30940  methyl-accepting chemotaxis protein  21.97 
 
 
407 aa  48.1  0.0004  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.682285  normal 
 
 
-
 
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