Gene RPB_3492 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPB_3492 
Symbol 
ID3911294 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris HaA2 
KingdomBacteria 
Replicon accessionNC_007778 
Strand
Start bp3995695 
End bp3997374 
Gene Length1680 bp 
Protein Length559 aa 
Translation table11 
GC content64% 
IMG OID637885394 
Productmethyl-accepting chemotaxis sensory transducer with Pas/Pac sensor 
Protein accessionYP_487098 
Protein GI86750602 
COG category[N] Cell motility
[T] Signal transduction mechanisms 
COG ID[COG0840] Methyl-accepting chemotaxis protein 
TIGRFAM ID[TIGR00229] PAS domain S-box 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.948629 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTTCGGTC GCCGTTCGAA GAAGAACCCT GATGCGCTGG CGCTGATGGC GGCCAAGGCG 
GTCCGAGCCA ACATCATGGT GTCGGACGCC AATCTCGACA TCGTCTACAT GAACGATGCG
GTGACGTCGC TGTTGCGCGA AGCCGAATCC GACATGAAGA AGGAAATGCC GAACTTCAAC
GTCGACACGC TGGTCGGCAC CAATATTGAC GGCTTCCACA AGAATCCGAG CCATCAGCGG
CAGATGCTGA AGAGCCTCAG TTCGGTGCAT CGCGCCACCA TCAAGGTCGG GCCGCGGAGC
TTCGATCTGG TGGCGACGCC GCTGAACAAT GCCGACGGCA GCCGCGCCGG CGTCGTGGTC
GAATGGGCCG ACGCCGCGAT CCGGCTGCAG AACGTCGATT TCGCCGGGCA GGTCGAAGCG
ATCGGCAAGT CGCAGGCGGT GATCGAATTC AACATGGACG GCACCGTCCG AACCGCCAAC
GAGAATTTCC TGAGGACTCT CGGCTACTCG CTGGCCGAGA TCCAGGGCAA GCACCACAGC
ATGTTCGTCG AGCCGTCGAT GCGCGGCACG ACCGCCTATC GCGAATTCTG GGCGGCGCTG
AACCGCGGTG AATTCCAGGC CGCCGAATAC AAGCGGATCG GCAAGGGCGG CAAGGAAGTC
TGGATTCAGG CGTCCTACAA TCCGATCCTC GACGAGAAGG GCAAACCCGC CAAAGTGGTG
AAATTCGCCA CCGACGTCAC CGAGCAGAAG CTGAAGAACG CGGATCTCGC GGGGCAGATC
GAGGCGATCG GCAAGTCGCA GGCGGTGATC GAGTTCAACA TGGACGGCAC CATCATCAAC
GCCAACGACA ATTTCCTGAA CGCGCTCGGC TATACGCTGG CCGAGATCAA GGGCAAGCAC
CACAGCCTGT TCGTCGATCC GCACGAGCGC GAGGGTGCGG CGTATCGCGA ATTCTGGGCG
TCGCTCGGCC GCGGTCAGTA TCAGGCGGCG GAATACAAGC GGATCGGCAA GGGGGGCCGC
GAAGTCTACA TCCAGGCCTC CTACAATCCG ATCCTCGATC TCAACGGCCG GCCGTTCAAG
GTGGTGAAAT ACGCCACCGA CGTCACCCAG CAGGTGCTCG CCCGGATGGG CAATGAGCGC
GTGCGCAGCA TGATGGAAAC CGTCGCCGCC GGCGCCGAGG AACTCAACGC GTCGGTCCGC
GAGATCTCCG CGACGATGAC CAAGTCGCGC GAGACCGCGG CCGGCGCCGT CGAACGCGTG
GCGAATGCCG ACGCTCAGGC GCAGCGCCTC ACCAGCGCGG CGCAGGCGAT GAGCGGCATC
GTCGAACTGA TCAACAACAT CACCGGGCAG ATCAATCTGC TCGCGCTCAA CGCCACGATC
GAATCGGCGC GGGCCGGAGA GGCCGGCCGC GGCTTCGCCG TGGTCGCCGC CGAGGTCAAG
AACCTCGCCA ACCAGGCCAA GCAGGCCACC GACAAGATCG GCGAGGAAAT CGGCAGCCTC
AACATTATCT CGGGCGACGT CGCCGGCGCG CTGAACGCGA TCAAGGAAGC GATCACCCAT
GTCAGCGAAT ATGTGACGTC GACCGCGGCT GCGGTCGAGG AGCAGAGCAC GGTGACCAGC
GAAATGTCGA CAAGCATGCA ACGTGCCGCC GCCGAGGCCG CCAGCATCGC GGCCGGCTGA
 
Protein sequence
MFGRRSKKNP DALALMAAKA VRANIMVSDA NLDIVYMNDA VTSLLREAES DMKKEMPNFN 
VDTLVGTNID GFHKNPSHQR QMLKSLSSVH RATIKVGPRS FDLVATPLNN ADGSRAGVVV
EWADAAIRLQ NVDFAGQVEA IGKSQAVIEF NMDGTVRTAN ENFLRTLGYS LAEIQGKHHS
MFVEPSMRGT TAYREFWAAL NRGEFQAAEY KRIGKGGKEV WIQASYNPIL DEKGKPAKVV
KFATDVTEQK LKNADLAGQI EAIGKSQAVI EFNMDGTIIN ANDNFLNALG YTLAEIKGKH
HSLFVDPHER EGAAYREFWA SLGRGQYQAA EYKRIGKGGR EVYIQASYNP ILDLNGRPFK
VVKYATDVTQ QVLARMGNER VRSMMETVAA GAEELNASVR EISATMTKSR ETAAGAVERV
ANADAQAQRL TSAAQAMSGI VELINNITGQ INLLALNATI ESARAGEAGR GFAVVAAEVK
NLANQAKQAT DKIGEEIGSL NIISGDVAGA LNAIKEAITH VSEYVTSTAA AVEEQSTVTS
EMSTSMQRAA AEAASIAAG