More than 300 homologs were found in PanDaTox collection
for query gene VC0395_A1719 on replicon NC_009457
Organism: Vibrio cholerae O395



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011312  VSAL_I2310  sigma-54 dependent response regulator  79.79 
 
 
478 aa  775    Aliivibrio salmonicida LFI1238  Bacteria  normal  n/a   
 
 
-
 
NC_009783  VIBHAR_03164  hypothetical protein  83.02 
 
 
469 aa  806    Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_009457  VC0395_A1719  flagellar regulatory protein C  100 
 
 
479 aa  980    Vibrio cholerae O395  Bacteria  normal  0.0473988  n/a   
 
 
-
 
NC_013456  VEA_002813  flagellar regulatory protein FleQ  84.66 
 
 
469 aa  827    Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_011138  MADE_02891  flagellar regulatory protein C  61.22 
 
 
445 aa  591  1e-168  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_003910  CPS_1500  flagellar regulatory protein C  63.31 
 
 
446 aa  589  1e-167  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_008228  Patl_3049  two component, sigma54 specific, Fis family transcriptional regulator  60.59 
 
 
447 aa  587  1e-166  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_009438  Sputcn32_2578  two component, sigma54 specific, Fis family transcriptional regulator  62.26 
 
 
446 aa  583  1.0000000000000001e-165  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_011663  Sbal223_1435  two component, sigma54 specific, transcriptional regulator, Fis family  63.1 
 
 
447 aa  576  1.0000000000000001e-163  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_009665  Shew185_2938  two component, sigma54 specific, Fis family transcriptional regulator  63.1 
 
 
447 aa  576  1.0000000000000001e-163  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_004347  SO_3230  flagellar regulatory protein C  62.05 
 
 
446 aa  572  1.0000000000000001e-162  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009052  Sbal_2928  two component, sigma54 specific, Fis family transcriptional regulator  62.89 
 
 
447 aa  574  1.0000000000000001e-162  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_010506  Swoo_1616  two component, sigma54 specific, Fis family transcriptional regulator  61.51 
 
 
452 aa  572  1.0000000000000001e-162  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_009997  Sbal195_3070  two component, sigma54 specific, Fis family transcriptional regulator  62.97 
 
 
447 aa  571  1.0000000000000001e-162  Shewanella baltica OS195  Bacteria  normal  normal  0.6792 
 
 
-
 
NC_008321  Shewmr4_1280  two component, sigma54 specific, Fis family transcriptional regulator  62.26 
 
 
446 aa  572  1.0000000000000001e-162  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_008322  Shewmr7_1347  two component, sigma54 specific, Fis family transcriptional regulator  62.05 
 
 
446 aa  571  1.0000000000000001e-162  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_008577  Shewana3_1340  two component, sigma54 specific, Fis family transcriptional regulator  62.05 
 
 
446 aa  573  1.0000000000000001e-162  Shewanella sp. ANA-3  Bacteria  normal  normal  0.598769 
 
 
-
 
NC_008700  Sama_2299  response regulator receiver protein  60.59 
 
 
446 aa  568  1e-161  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_009831  Ssed_3068  two component, sigma54 specific, Fis family transcriptional regulator  61.95 
 
 
452 aa  565  1e-160  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_009092  Shew_1364  two component, sigma54 specific, Fis family transcriptional regulator  61.51 
 
 
447 aa  564  1.0000000000000001e-159  Shewanella loihica PV-4  Bacteria  normal  0.885668  normal 
 
 
-
 
NC_007954  Sden_1322  sigma-54 factor, interaction region  59.96 
 
 
446 aa  559  1e-158  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_009901  Spea_1359  two component, sigma54 specific, Fis family transcriptional regulator  59.41 
 
 
450 aa  556  1e-157  Shewanella pealeana ATCC 700345  Bacteria  normal  0.594792  n/a   
 
 
-
 
NC_008345  Sfri_1180  two component, sigma54 specific, transcriptional regulator, Fis family protein  61.92 
 
 
449 aa  555  1e-157  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_009439  Pmen_2827  two component, sigma54 specific, Fis family transcriptional regulator  56.3 
 
 
470 aa  511  1e-143  Pseudomonas mendocina ymp  Bacteria  normal  normal  0.0126149 
 
 
-
 
NC_008740  Maqu_1999  two component, sigma54 specific, Fis family transcriptional regulator  55.49 
 
 
481 aa  503  1e-141  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_007492  Pfl01_1534  two component, sigma-54 specific, Fis family transcriptional regulator  55.67 
 
 
463 aa  485  1e-136  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_009654  Mmwyl1_3450  two component, sigma54 specific, Fis family transcriptional regulator  52.52 
 
 
448 aa  481  1e-134  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_008463  PA14_50180  two-component response regulator  54.28 
 
 
473 aa  479  1e-134  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.966541  hitchhiker  0.00555849 
 
 
-
 
NC_002947  PP_4371  two component, sigma54 specific, transcriptional regulator, Fis family  53.29 
 
 
451 aa  475  1e-133  Pseudomonas putida KT2440  Bacteria  normal  0.109269  normal  0.91149 
 
 
-
 
NC_004578  PSPTO_1956  sigma-54 dependent transcriptional regulator/response regulator FleR  54.18 
 
 
471 aa  476  1e-133  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.75595  n/a   
 
 
-
 
NC_010322  PputGB1_3932  two component, sigma54 specific, Fis family transcriptional regulator  53.08 
 
 
451 aa  476  1e-133  Pseudomonas putida GB-1  Bacteria  normal  0.215439  normal 
 
 
-
 
NC_010501  PputW619_3696  two component, sigma54 specific, Fis family transcriptional regulator  53.47 
 
 
458 aa  475  1e-133  Pseudomonas putida W619  Bacteria  normal  0.12736  normal 
 
 
-
 
NC_007005  Psyr_3459  helix-turn-helix, Fis-type  54.83 
 
 
471 aa  471  1e-132  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_009512  Pput_1496  two component, sigma54 specific, Fis family transcriptional regulator  53.08 
 
 
451 aa  473  1e-132  Pseudomonas putida F1  Bacteria  normal  0.190196  normal  0.699272 
 
 
-
 
NC_009656  PSPA7_4272  two-component response regulator  54.64 
 
 
470 aa  474  1e-132  Pseudomonas aeruginosa PA7  Bacteria  normal  0.299925  n/a   
 
 
-
 
NC_006368  lpp1726  hypothetical protein  50.21 
 
 
437 aa  465  9.999999999999999e-131  Legionella pneumophila str. Paris  Bacteria  n/a    n/a   
 
 
-
 
NC_006369  lpl1726  hypothetical protein  50.43 
 
 
437 aa  468  9.999999999999999e-131  Legionella pneumophila str. Lens  Bacteria  n/a    n/a   
 
 
-
 
NC_007912  Sde_2191  diguanylate cyclase/phosphodiesterase  51.15 
 
 
497 aa  464  1e-129  Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_007520  Tcr_1444  two component, sigma54 specific, Fis family transcriptional regulator  49.47 
 
 
459 aa  455  1.0000000000000001e-126  Thiomicrospira crunogena XCL-2  Bacteria  normal  n/a   
 
 
-
 
NC_007298  Daro_0775  helix-turn-helix, Fis-type  50.32 
 
 
457 aa  445  1.0000000000000001e-124  Dechloromonas aromatica RCB  Bacteria  normal  normal  0.118214 
 
 
-
 
NC_011662  Tmz1t_2897  two component, sigma54 specific, transcriptional regulator, Fis family  51.49 
 
 
473 aa  435  1e-121  Thauera sp. MZ1T  Bacteria  normal  0.189439  n/a   
 
 
-
 
NC_007484  Noc_2361  two component sigma-54 specific, transcriptional regulator, Fis famliy  48.74 
 
 
449 aa  421  1e-116  Nitrosococcus oceani ATCC 19707  Bacteria  normal  n/a   
 
 
-
 
NC_011901  Tgr7_1972  response regulator receiver protein  50.52 
 
 
455 aa  419  1e-116  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_008340  Mlg_0707  two component, sigma54 specific, Fis family transcriptional regulator  43.7 
 
 
469 aa  367  1e-100  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.112148  normal  0.322603 
 
 
-
 
NC_008789  Hhal_0500  two component, sigma54 specific, Fis family transcriptional regulator  45.59 
 
 
476 aa  359  8e-98  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_013457  VEA_001184  putative two-component response regulator  41.26 
 
 
443 aa  345  1e-93  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_2678  two component, sigma-54 specific, Fis family transcriptional regulator  41.37 
 
 
457 aa  341  2e-92  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_1397  two component, sigma54 specific, Fis family transcriptional regulator  42.29 
 
 
458 aa  341  2e-92  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_009784  VIBHAR_04971  acetoacetate metabolism regulatory protein AtoC  40.58 
 
 
444 aa  341  2e-92  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_013501  Rmar_0797  two component, sigma54 specific, transcriptional regulator, Fis family  40.24 
 
 
472 aa  337  1.9999999999999998e-91  Rhodothermus marinus DSM 4252  Bacteria  normal  0.241811  n/a   
 
 
-
 
NC_010814  Glov_2942  two component, sigma54 specific, transcriptional regulator, Fis family  40.38 
 
 
451 aa  337  1.9999999999999998e-91  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_1635  two component, sigma54 specific, transcriptional regulator, Fis family  40.75 
 
 
457 aa  334  2e-90  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_002939  GSU0470  sigma-54 dependent response regulator  40.53 
 
 
453 aa  331  1e-89  Geobacter sulfurreducens PCA  Bacteria  normal  0.253212  n/a   
 
 
-
 
NC_009483  Gura_2018  two component, sigma-54 specific, Fis family transcriptional regulator  40 
 
 
447 aa  332  1e-89  Geobacter uraniireducens Rf4  Bacteria  normal  0.110893  n/a   
 
 
-
 
NC_007760  Adeh_4240  two component, sigma54 specific, Fis family transcriptional regulator  38.27 
 
 
469 aa  330  3e-89  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_010571  Oter_0437  two component, sigma54 specific, Fis family transcriptional regulator  40.25 
 
 
490 aa  329  6e-89  Opitutus terrae PB90-1  Bacteria  normal  normal 
 
 
-
 
NC_013385  Adeg_0173  two component, sigma54 specific, transcriptional regulator, Fis family  40.99 
 
 
463 aa  329  7e-89  Ammonifex degensii KC4  Bacteria  normal  0.127235  n/a   
 
 
-
 
NC_013173  Dbac_2942  two component, sigma54 specific, transcriptional regulator, Fis family  37.6 
 
 
451 aa  328  1.0000000000000001e-88  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_009720  Xaut_1032  two component, sigma54 specific, Fis family transcriptional regulator  39.22 
 
 
461 aa  326  7e-88  Xanthobacter autotrophicus Py2  Bacteria  normal  normal  0.454426 
 
 
-
 
NC_013889  TK90_1156  sigma54 specific transcriptional regulator, Fis family  41.16 
 
 
457 aa  325  1e-87  Thioalkalivibrio sp. K90mix  Bacteria  normal  hitchhiker  0.00283001 
 
 
-
 
NC_009675  Anae109_4389  two component, sigma54 specific, Fis family transcriptional regulator  37.11 
 
 
495 aa  325  1e-87  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.205713  normal  0.107293 
 
 
-
 
NC_011146  Gbem_2591  two component, sigma54 specific, transcriptional regulator, Fis family  40.12 
 
 
457 aa  323  4e-87  Geobacter bemidjiensis Bem  Bacteria  normal  0.313706  n/a   
 
 
-
 
NC_009943  Dole_2807  two component, sigma54 specific, Fis family transcriptional regulator  39.75 
 
 
466 aa  323  5e-87  Desulfococcus oleovorans Hxd3  Bacteria  normal  0.75933  n/a   
 
 
-
 
NC_012918  GM21_2062  two component, sigma54 specific, transcriptional regulator, Fis family  40.92 
 
 
449 aa  322  7e-87  Geobacter sp. M21  Bacteria  n/a    hitchhiker  0.000000000000496565 
 
 
-
 
NC_010814  Glov_2786  two component, sigma54 specific, transcriptional regulator, Fis family  37.76 
 
 
480 aa  322  8e-87  Geobacter lovleyi SZ  Bacteria  normal  0.543097  n/a   
 
 
-
 
NC_008751  Dvul_2853  two component, sigma54 specific, Fis family transcriptional regulator  39.06 
 
 
476 aa  321  9.999999999999999e-87  Desulfovibrio vulgaris DP4  Bacteria  normal  normal 
 
 
-
 
NC_011891  A2cp1_4396  two component, sigma54 specific, transcriptional regulator, Fis family  37.45 
 
 
469 aa  321  1.9999999999999998e-86  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_011145  AnaeK_4373  two component, sigma54 specific, transcriptional regulator, Fis family  37.45 
 
 
469 aa  321  1.9999999999999998e-86  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_007498  Pcar_1960  response regulator transcription factor  42.25 
 
 
471 aa  320  3e-86  Pelobacter carbinolicus DSM 2380  Bacteria  normal  n/a   
 
 
-
 
NC_010498  EcSMS35_2369  acetoacetate metabolism regulatory protein AtoC  38.24 
 
 
461 aa  320  3e-86  Escherichia coli SMS-3-5  Bacteria  normal  0.0790211  normal 
 
 
-
 
NC_010468  EcolC_1430  acetoacetate metabolism regulatory protein AtoC  38.24 
 
 
461 aa  320  3e-86  Escherichia coli ATCC 8739  Bacteria  normal  0.324678  hitchhiker  0.00137179 
 
 
-
 
NC_002620  TC0753  sigma-54 dependent response regulator  42.19 
 
 
387 aa  320  3.9999999999999996e-86  Chlamydia muridarum Nigg  Bacteria  normal  n/a   
 
 
-
 
NC_013173  Dbac_1017  two component, sigma54 specific, transcriptional regulator, Fis family  40.42 
 
 
445 aa  320  3.9999999999999996e-86  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.246569  n/a   
 
 
-
 
NC_008554  Sfum_3765  two component, sigma54 specific, Fis family transcriptional regulator  36.55 
 
 
463 aa  320  3.9999999999999996e-86  Syntrophobacter fumaroxidans MPOB  Bacteria  decreased coverage  0.000821276  normal 
 
 
-
 
CP001509  ECD_02147  fused response regulator of ato operon, in two-component system with AtoS: response regulator/sigma54 interaction protein  38.24 
 
 
461 aa  320  5e-86  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_1438  two component, sigma54 specific, transcriptional regulator, Fis family  38.24 
 
 
461 aa  320  5e-86  Escherichia coli DH1  Bacteria  normal  0.445705  n/a   
 
 
-
 
NC_012892  B21_02106  hypothetical protein  38.24 
 
 
461 aa  320  5e-86  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_009800  EcHS_A2361  acetoacetate metabolism regulatory protein AtoC  38.24 
 
 
461 aa  320  5e-86  Escherichia coli HS  Bacteria  normal  0.18992  n/a   
 
 
-
 
NC_007760  Adeh_1908  two component, sigma54 specific, Fis family transcriptional regulator  41.22 
 
 
473 aa  319  5e-86  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_011769  DvMF_0823  two component, sigma54 specific, transcriptional regulator, Fis family  36.76 
 
 
456 aa  320  5e-86  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.449732 
 
 
-
 
NC_011891  A2cp1_2056  two component, sigma54 specific, transcriptional regulator, Fis family  41.49 
 
 
473 aa  319  7e-86  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.732718  n/a   
 
 
-
 
NC_011145  AnaeK_1971  two component, sigma54 specific, transcriptional regulator, Fis family  41.49 
 
 
473 aa  319  7e-86  Anaeromyxobacter sp. K  Bacteria  normal  0.0887215  n/a   
 
 
-
 
NC_007963  Csal_2407  two component, sigma54 specific, Fis family transcriptional regulator  40.17 
 
 
461 aa  318  1e-85  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_009675  Anae109_1951  two component, sigma54 specific, Fis family transcriptional regulator  37.68 
 
 
470 aa  318  2e-85  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.516267  normal 
 
 
-
 
NC_009831  Ssed_0079  sigma-54 dependent trancsriptional regulator  38.84 
 
 
433 aa  318  2e-85  Shewanella sediminis HAW-EB3  Bacteria  normal  0.819278  normal 
 
 
-
 
NC_008700  Sama_1549  response regulator receiver protein  41.71 
 
 
444 aa  317  4e-85  Shewanella amazonensis SB2B  Bacteria  normal  0.637407  normal 
 
 
-
 
NC_009943  Dole_0427  two component, sigma54 specific, Fis family transcriptional regulator  39.3 
 
 
458 aa  317  4e-85  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_3903  two component, sigma54 specific, transcriptional regulator, Fis family  41.43 
 
 
455 aa  316  5e-85  Geobacter sp. M21  Bacteria  n/a    hitchhiker  0.000574971 
 
 
-
 
NC_013440  Hoch_5989  two component, sigma54 specific, transcriptional regulator, Fis family  35.32 
 
 
459 aa  316  5e-85  Haliangium ochraceum DSM 14365  Bacteria  normal  0.999422  normal 
 
 
-
 
NC_013223  Dret_0548  two component, sigma54 specific, transcriptional regulator, Fis family  42.67 
 
 
452 aa  316  7e-85  Desulfohalobium retbaense DSM 5692  Bacteria  normal  0.902927  normal 
 
 
-
 
NC_011769  DvMF_1993  two component, sigma54 specific, transcriptional regulator, Fis family  44.33 
 
 
486 aa  316  7e-85  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_010814  Glov_1657  two component, sigma54 specific, transcriptional regulator, Fis family  38.59 
 
 
456 aa  315  9e-85  Geobacter lovleyi SZ  Bacteria  normal  0.0365007  n/a   
 
 
-
 
NC_002939  GSU1320  sigma-54 dependent DNA-binding response regulator  44.47 
 
 
460 aa  315  9.999999999999999e-85  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_002939  GSU2581  sigma-54 dependent transcriptional regulator  45.08 
 
 
456 aa  315  9.999999999999999e-85  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_011206  Lferr_0029  two component, sigma54 specific, transcriptional regulator, Fis family  42.78 
 
 
455 aa  315  9.999999999999999e-85  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  0.59486  normal  0.125276 
 
 
-
 
NC_011761  AFE_0027  sigma-54 dependent transcriptional regulator/response regulator  42.78 
 
 
455 aa  315  9.999999999999999e-85  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  n/a   
 
 
-
 
NC_007575  Suden_0637  response regulator receiver domain-containing protein  43.31 
 
 
384 aa  315  9.999999999999999e-85  Sulfurimonas denitrificans DSM 1251  Bacteria  hitchhiker  0.00837548  n/a   
 
 
-
 
NC_011891  A2cp1_2398  two component, sigma54 specific, transcriptional regulator, Fis family  38.08 
 
 
469 aa  315  1.9999999999999998e-84  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.313034  n/a   
 
 
-
 
NC_007519  Dde_0109  two component Fis family transcriptional regulator  38.16 
 
 
466 aa  314  2.9999999999999996e-84  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_009439  Pmen_4419  two component, sigma54 specific, Fis family transcriptional regulator  41.44 
 
 
469 aa  313  2.9999999999999996e-84  Pseudomonas mendocina ymp  Bacteria  normal  normal  0.475055 
 
 
-
 
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