More than 300 homologs were found in PanDaTox collection
for query gene Shewana3_0481 on replicon NC_008577
Organism: Shewanella sp. ANA-3



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008321  Shewmr4_0483  response regulator receiver sensor signal transduction histidine kinase  86.04 
 
 
524 aa  925    Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_008322  Shewmr7_3547  response regulator receiver sensor signal transduction histidine kinase  85.85 
 
 
524 aa  924    Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_008577  Shewana3_0481  response regulator receiver protein  100 
 
 
523 aa  1066    Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_004347  SO_3999  sensor histidine kinase  55.52 
 
 
310 aa  336  7e-91  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_004347  SO_4001  chemotaxis protein CheY/response regulator receiver domain-containing protein  55.75 
 
 
229 aa  263  8.999999999999999e-69  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_013173  Dbac_2855  response regulator receiver sensor signal transduction histidine kinase  34.26 
 
 
348 aa  209  1e-52  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_003910  CPS_4166  response regulator  28.45 
 
 
508 aa  187  5e-46  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_007908  Rfer_2262  response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  31.62 
 
 
853 aa  139  1e-31  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_010524  Lcho_3702  response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  33.46 
 
 
863 aa  136  9.999999999999999e-31  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.170309 
 
 
-
 
NC_014248  Aazo_4229  response regulator receiver sensor signal transduction histidine kinase  27.73 
 
 
383 aa  134  3e-30  'Nostoc azollae' 0708  Bacteria  normal  0.599633  n/a   
 
 
-
 
NC_012918  GM21_0975  response regulator receiver sensor signal transduction histidine kinase  30.35 
 
 
383 aa  133  6e-30  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_011729  PCC7424_2188  response regulator receiver sensor signal transduction histidine kinase  27.73 
 
 
384 aa  130  5.0000000000000004e-29  Cyanothece sp. PCC 7424  Bacteria  n/a    hitchhiker  0.00677544 
 
 
-
 
NC_011146  Gbem_3274  response regulator receiver sensor signal transduction histidine kinase  29.89 
 
 
383 aa  130  5.0000000000000004e-29  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_008576  Mmc1_3271  PAS/PAC sensor hybrid histidine kinase  29.75 
 
 
1691 aa  127  3e-28  Magnetococcus sp. MC-1  Bacteria  normal  normal 
 
 
-
 
NC_008752  Aave_2064  response regulator receiver modulated metal dependent phosphohydrolase  33.58 
 
 
395 aa  127  4.0000000000000003e-28  Acidovorax citrulli AAC00-1  Bacteria  normal  0.18463  normal  0.544249 
 
 
-
 
NC_010002  Daci_3828  response regulator receiver sensor signal transduction histidine kinase  27.59 
 
 
392 aa  126  8.000000000000001e-28  Delftia acidovorans SPH-1  Bacteria  normal  0.287383  normal  0.140943 
 
 
-
 
NC_008700  Sama_2951  response regulator receiver protein  35.93 
 
 
340 aa  125  2e-27  Shewanella amazonensis SB2B  Bacteria  normal  normal  0.129077 
 
 
-
 
NC_008009  Acid345_4060  response regulator receiver modulated metal dependent phosphohydrolase  47.01 
 
 
365 aa  124  4e-27  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal  0.0748941 
 
 
-
 
NC_008576  Mmc1_3408  response regulator receiver modulated metal dependent phosphohydrolase  33.77 
 
 
346 aa  123  7e-27  Magnetococcus sp. MC-1  Bacteria  normal  normal 
 
 
-
 
NC_007519  Dde_1941  response regulator receiver sensor signal transduction histidine kinase  38.42 
 
 
395 aa  122  1.9999999999999998e-26  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  0.0596409  n/a   
 
 
-
 
NC_009439  Pmen_0836  response regulator receiver protein  48.8 
 
 
395 aa  121  1.9999999999999998e-26  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_013161  Cyan8802_1510  response regulator receiver sensor signal transduction histidine kinase  27.81 
 
 
374 aa  121  3e-26  Cyanothece sp. PCC 8802  Bacteria  normal  normal 
 
 
-
 
NC_011726  PCC8801_1483  response regulator receiver sensor signal transduction histidine kinase  27.81 
 
 
374 aa  121  3e-26  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_009092  Shew_3199  response regulator receiver modulated metal dependent phosphohydrolase  42.04 
 
 
339 aa  121  3.9999999999999996e-26  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_013161  Cyan8802_3359  response regulator receiver sensor signal transduction histidine kinase  30.58 
 
 
395 aa  120  3.9999999999999996e-26  Cyanothece sp. PCC 8802  Bacteria  normal  0.361398  normal 
 
 
-
 
NC_009438  Sputcn32_3141  response regulator receiver modulated metal dependent phosphohydrolase  43.54 
 
 
338 aa  121  3.9999999999999996e-26  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_011726  PCC8801_2743  response regulator receiver sensor signal transduction histidine kinase  30.58 
 
 
395 aa  120  3.9999999999999996e-26  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_011769  DvMF_1097  response regulator receiver modulated metal dependent phosphohydrolase  35.94 
 
 
391 aa  121  3.9999999999999996e-26  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.151318 
 
 
-
 
NC_011884  Cyan7425_4555  response regulator receiver sensor signal transduction histidine kinase  27.86 
 
 
406 aa  120  4.9999999999999996e-26  Cyanothece sp. PCC 7425  Bacteria  normal  0.330139  normal  0.677797 
 
 
-
 
NC_008709  Ping_0978  response regulator receiver modulated diguanylate cyclase  42.96 
 
 
322 aa  120  4.9999999999999996e-26  Psychromonas ingrahamii 37  Bacteria  normal  0.97362  decreased coverage  0.00116316 
 
 
-
 
NC_008577  Shewana3_3418  response regulator receiver modulated metal dependent phosphohydrolase  43.84 
 
 
338 aa  120  6e-26  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_004347  SO_0860  response regulator  43.84 
 
 
339 aa  120  7e-26  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_008321  Shewmr4_0716  response regulator receiver modulated metal dependent phosphohydrolase  43.84 
 
 
338 aa  120  7e-26  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_008322  Shewmr7_3306  response regulator receiver modulated metal dependent phosphohydrolase  43.84 
 
 
338 aa  120  7e-26  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_007298  Daro_0007  response regulator receiver modulated metal dependent phosphohydrolase  32 
 
 
379 aa  119  9e-26  Dechloromonas aromatica RCB  Bacteria  normal  0.829613  normal  0.0284762 
 
 
-
 
NC_009654  Mmwyl1_0356  response regulator receiver modulated metal dependent phosphohydrolase  32.87 
 
 
360 aa  120  9e-26  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_009901  Spea_0629  response regulator receiver modulated metal dependent phosphohydrolase  34.21 
 
 
339 aa  119  9.999999999999999e-26  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_010524  Lcho_2452  response regulator receiver modulated metal dependent phosphohydrolase  45.89 
 
 
377 aa  119  1.9999999999999998e-25  Leptothrix cholodnii SP-6  Bacteria  n/a    hitchhiker  0.00101758 
 
 
-
 
NC_013216  Dtox_3783  histidine kinase  29.2 
 
 
544 aa  117  5e-25  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  0.401083  normal 
 
 
-
 
NC_011884  Cyan7425_4611  response regulator receiver sensor signal transduction histidine kinase  31.47 
 
 
1002 aa  117  6.9999999999999995e-25  Cyanothece sp. PCC 7425  Bacteria  normal  normal  0.367657 
 
 
-
 
NC_010623  Bphy_4530  response regulator receiver sensor signal transduction histidine kinase  30.19 
 
 
386 aa  116  8.999999999999998e-25  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_007348  Reut_B4539  response regulator receiver:ATP-binding region, ATPase-like:histidine kinase A, N-terminal  28.5 
 
 
1152 aa  115  1.0000000000000001e-24  Ralstonia eutropha JMP134  Bacteria  normal  0.329946  n/a   
 
 
-
 
NC_009997  Sbal195_0871  response regulator receiver modulated metal dependent phosphohydrolase  40.82 
 
 
338 aa  115  1.0000000000000001e-24  Shewanella baltica OS195  Bacteria  normal  normal 
 
 
-
 
NC_009665  Shew185_0836  response regulator receiver modulated metal dependent phosphohydrolase  40.82 
 
 
338 aa  115  1.0000000000000001e-24  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_013061  Phep_0587  ATP-binding region ATPase domain protein  30 
 
 
1161 aa  115  1.0000000000000001e-24  Pedobacter heparinus DSM 2366  Bacteria  normal  normal 
 
 
-
 
NC_012560  Avin_50640  response regulator with metal dependent phosphohydrolase activity (two-component)  32.02 
 
 
347 aa  116  1.0000000000000001e-24  Azotobacter vinelandii DJ  Bacteria  normal  0.121542  n/a   
 
 
-
 
NC_011146  Gbem_1228  response regulator receiver modulated diguanylate cyclase  44.68 
 
 
349 aa  116  1.0000000000000001e-24  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_011663  Sbal223_0859  response regulator receiver modulated metal dependent phosphohydrolase  40.82 
 
 
338 aa  115  1.0000000000000001e-24  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_011992  Dtpsy_0962  response regulator receiver modulated metal dependent phosphohydrolase  47.5 
 
 
377 aa  116  1.0000000000000001e-24  Acidovorax ebreus TPSY  Bacteria  normal  0.115091  n/a   
 
 
-
 
NC_009052  Sbal_3504  response regulator receiver modulated metal dependent phosphohydrolase  40.82 
 
 
338 aa  115  1.0000000000000001e-24  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_002939  GSU0149  sensor histidine kinase/response regulator  29.16 
 
 
371 aa  115  2.0000000000000002e-24  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_008782  Ajs_1044  response regulator receiver modulated metal dependent phosphohydrolase  47.5 
 
 
377 aa  114  3e-24  Acidovorax sp. JS42  Bacteria  normal  normal  0.0516082 
 
 
-
 
NC_013440  Hoch_2262  response regulator receiver sensor signal transduction histidine kinase  30.9 
 
 
406 aa  114  4.0000000000000004e-24  Haliangium ochraceum DSM 14365  Bacteria  normal  normal  0.146487 
 
 
-
 
NC_008782  Ajs_0650  response regulator receiver sensor signal transduction histidine kinase  28.41 
 
 
382 aa  114  4.0000000000000004e-24  Acidovorax sp. JS42  Bacteria  normal  normal 
 
 
-
 
NC_011992  Dtpsy_0629  response regulator receiver sensor signal transduction histidine kinase  28.12 
 
 
382 aa  114  5e-24  Acidovorax ebreus TPSY  Bacteria  normal  0.67365  n/a   
 
 
-
 
NC_010506  Swoo_3313  response regulator receiver modulated metal dependent phosphohydrolase  40.43 
 
 
343 aa  113  7.000000000000001e-24  Shewanella woodyi ATCC 51908  Bacteria  normal  hitchhiker  0.00000482447 
 
 
-
 
NC_007948  Bpro_4465  adenylate/guanylate cyclase  43.28 
 
 
561 aa  113  8.000000000000001e-24  Polaromonas sp. JS666  Bacteria  normal  normal  0.419976 
 
 
-
 
NC_010814  Glov_1988  response regulator receiver modulated diguanylate cyclase with PAS/PAC sensor  40.24 
 
 
435 aa  113  9e-24  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_008576  Mmc1_2393  response regulator receiver sensor hybrid histidine kinase  26.69 
 
 
518 aa  113  9e-24  Magnetococcus sp. MC-1  Bacteria  normal  0.991201  normal  0.0787545 
 
 
-
 
NC_007413  Ava_1562  response regulator receiver Signal transduction histidine kinase  28.53 
 
 
369 aa  113  1.0000000000000001e-23  Anabaena variabilis ATCC 29413  Bacteria  normal  0.847548  normal  0.236297 
 
 
-
 
NC_010551  BamMC406_1236  response regulator receiver sensor signal transduction histidine kinase  30.19 
 
 
386 aa  112  1.0000000000000001e-23  Burkholderia ambifaria MC40-6  Bacteria  normal  0.493129  normal 
 
 
-
 
NC_008576  Mmc1_1215  periplasmic sensor hybrid histidine kinase  29.29 
 
 
944 aa  112  1.0000000000000001e-23  Magnetococcus sp. MC-1  Bacteria  normal  0.960151  normal  0.101285 
 
 
-
 
NC_008740  Maqu_3676  response regulator receiver modulated metal dependent phosphohydrolase  42.07 
 
 
328 aa  112  2.0000000000000002e-23  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_007952  Bxe_B1713  two component LuxR family transcriptional regulator  44.2 
 
 
361 aa  111  3e-23  Burkholderia xenovorans LB400  Bacteria  normal  0.310925  normal 
 
 
-
 
NC_007954  Sden_3723  response regulator receiver  33.97 
 
 
338 aa  111  4.0000000000000004e-23  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_008577  Shewana3_0479  response regulator receiver modulated metal dependent phosphohydrolase  40.15 
 
 
350 aa  110  5e-23  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_008789  Hhal_0205  response regulator receiver protein  42.57 
 
 
395 aa  110  5e-23  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_003910  CPS_4164  response regulator/phosphatase  43.65 
 
 
352 aa  110  6e-23  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_007413  Ava_2149  response regulator receiver Signal transduction histidine kinase  27.84 
 
 
407 aa  110  6e-23  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.142048 
 
 
-
 
NC_010814  Glov_2955  response regulator receiver modulated diguanylate cyclase  31.28 
 
 
308 aa  110  6e-23  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_008345  Sfri_2505  response regulator receiver modulated metal dependent phosphohydrolase  34.48 
 
 
331 aa  110  6e-23  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_011138  MADE_01756  Response regulator CheB (receptor modification enzyme, protein-glutamate methylesterase)  36.04 
 
 
337 aa  110  7.000000000000001e-23  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  0.844049  n/a   
 
 
-
 
NC_008576  Mmc1_2528  response regulator receiver protein  42.86 
 
 
378 aa  110  8.000000000000001e-23  Magnetococcus sp. MC-1  Bacteria  normal  0.249668  normal  0.0734484 
 
 
-
 
NC_013440  Hoch_5118  integral membrane sensor hybrid histidine kinase  25.3 
 
 
837 aa  109  9.000000000000001e-23  Haliangium ochraceum DSM 14365  Bacteria  normal  normal  0.657918 
 
 
-
 
NC_012560  Avin_25160  response regulator  41.89 
 
 
356 aa  110  9.000000000000001e-23  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_011729  PCC7424_0500  response regulator receiver sensor signal transduction histidine kinase  27.84 
 
 
373 aa  109  9.000000000000001e-23  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_011662  Tmz1t_2833  response regulator receiver modulated metal dependent phosphohydrolase  44.88 
 
 
360 aa  110  9.000000000000001e-23  Thauera sp. MZ1T  Bacteria  normal  0.809465  n/a   
 
 
-
 
NC_007298  Daro_3005  response regulator receiver  43.51 
 
 
361 aa  109  1e-22  Dechloromonas aromatica RCB  Bacteria  normal  0.931132  normal 
 
 
-
 
NC_007348  Reut_B4068  response regulator receiver  32.11 
 
 
377 aa  109  1e-22  Ralstonia eutropha JMP134  Bacteria  normal  0.706307  n/a   
 
 
-
 
NC_010571  Oter_3856  response regulator receiver sensor signal transduction histidine kinase  25.13 
 
 
378 aa  109  1e-22  Opitutus terrae PB90-1  Bacteria  normal  normal  0.215089 
 
 
-
 
NC_008700  Sama_0065  response regulator receiver protein  38.82 
 
 
305 aa  109  1e-22  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_008781  Pnap_0979  response regulator receiver protein  43.65 
 
 
336 aa  108  2e-22  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal 
 
 
-
 
NC_008061  Bcen_3730  two component LuxR family transcriptional regulator  47.62 
 
 
312 aa  108  2e-22  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008543  Bcen2424_4638  two component LuxR family transcriptional regulator  47.62 
 
 
312 aa  108  2e-22  Burkholderia cenocepacia HI2424  Bacteria  normal  normal 
 
 
-
 
NC_010515  Bcenmc03_5666  two component LuxR family transcriptional regulator  47.62 
 
 
312 aa  108  2e-22  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal  0.917296 
 
 
-
 
NC_007298  Daro_1771  PAS:GGDEF  34.46 
 
 
449 aa  108  3e-22  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_008752  Aave_3993  response regulator receiver sensor signal transduction histidine kinase  26.24 
 
 
390 aa  108  3e-22  Acidovorax citrulli AAC00-1  Bacteria  normal  0.967169  normal 
 
 
-
 
NC_009831  Ssed_1382  response regulator receiver protein  39.57 
 
 
302 aa  107  4e-22  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_007413  Ava_4779  multi-sensor hybrid histidine kinase  30.21 
 
 
1195 aa  107  5e-22  Anabaena variabilis ATCC 29413  Bacteria  normal  0.133558  normal 
 
 
-
 
NC_010571  Oter_0809  response regulator receiver sensor signal transduction histidine kinase  28.62 
 
 
367 aa  107  5e-22  Opitutus terrae PB90-1  Bacteria  normal  normal 
 
 
-
 
NC_008322  Shewmr7_3549  response regulator receiver modulated metal dependent phosphohydrolase  39.16 
 
 
348 aa  107  5e-22  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_010623  Bphy_4207  response regulator receiver sensor signal transduction histidine kinase  25.22 
 
 
370 aa  107  6e-22  Burkholderia phymatum STM815  Bacteria  normal  normal  0.728065 
 
 
-
 
NC_008321  Shewmr4_0481  response regulator receiver modulated metal dependent phosphohydrolase  39.16 
 
 
348 aa  107  6e-22  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_010002  Daci_6015  response regulator receiver modulated metal dependent phosphohydrolase  33.05 
 
 
333 aa  107  7e-22  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_009831  Ssed_2864  two-component response regulator  41.35 
 
 
383 aa  107  7e-22  Shewanella sediminis HAW-EB3  Bacteria  normal  0.384945  hitchhiker  0.000000030251 
 
 
-
 
NC_010506  Swoo_0828  response regulator receiver modulated diguanylate cyclase  41.22 
 
 
324 aa  106  9e-22  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_010814  Glov_0136  multi-sensor signal transduction histidine kinase  28.64 
 
 
665 aa  105  1e-21  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_013173  Dbac_1030  histidine kinase  31.9 
 
 
261 aa  105  1e-21  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.975788  n/a   
 
 
-
 
NC_011883  Ddes_1054  response regulator receiver modulated metal dependent phosphohydrolase  31.77 
 
 
359 aa  106  1e-21  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  normal  n/a   
 
 
-
 
NC_008576  Mmc1_1794  periplasmic sensor signal transduction histidine kinase  30.46 
 
 
589 aa  106  1e-21  Magnetococcus sp. MC-1  Bacteria  decreased coverage  0.0000132214  normal 
 
 
-
 
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