More than 300 homologs were found in PanDaTox collection
for query gene Rpic12D_1408 on replicon NC_012856
Organism: Ralstonia pickettii 12D



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_012856  Rpic12D_1408  methyl-accepting chemotaxis sensory transducer  100 
 
 
513 aa  1002    Ralstonia pickettii 12D  Bacteria  normal  0.0312904  normal  0.0311205 
 
 
-
 
NC_003295  RSc1460  methyl-accepting chemotaxis transducer transmembrane protein  87.52 
 
 
513 aa  812    Ralstonia solanacearum GMI1000  Bacteria  normal  normal  0.75608 
 
 
-
 
NC_007951  Bxe_A2002  methyl-accepting chemotaxis sensory transducer  55.88 
 
 
601 aa  485  1e-136  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_010681  Bphyt_2259  methyl-accepting chemotaxis sensory transducer  53.92 
 
 
588 aa  475  1e-133  Burkholderia phytofirmans PsJN  Bacteria  normal  0.131825  normal  0.497854 
 
 
-
 
NC_012857  Rpic12D_3619  methyl-accepting chemotaxis sensory transducer  54.53 
 
 
608 aa  459  9.999999999999999e-129  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_012857  Rpic12D_4162  methyl-accepting chemotaxis sensory transducer  51.84 
 
 
615 aa  458  9.999999999999999e-129  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_010678  Rpic_4696  methyl-accepting chemotaxis sensory transducer  54.53 
 
 
608 aa  459  9.999999999999999e-129  Ralstonia pickettii 12J  Bacteria  normal  0.319993  normal  0.0826606 
 
 
-
 
NC_010678  Rpic_4050  methyl-accepting chemotaxis sensory transducer  51.84 
 
 
615 aa  458  9.999999999999999e-129  Ralstonia pickettii 12J  Bacteria  normal  0.996584  normal 
 
 
-
 
NC_007651  BTH_I2470  methyl-accepting chemotaxis protein  53.73 
 
 
616 aa  455  1e-127  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_003296  RSp1406  methyl-accepting chemotaxis I  52.05 
 
 
608 aa  450  1e-125  Ralstonia solanacearum GMI1000  Bacteria  normal  normal  0.13211 
 
 
-
 
NC_003296  RSp0303  methyl-accepting chemotaxis transmembrane protein  53.97 
 
 
515 aa  442  1e-123  Ralstonia solanacearum GMI1000  Bacteria  normal  normal  0.0248188 
 
 
-
 
NC_007434  BURPS1710b_2024  methyl-accepting chemotaxis protein I  53.92 
 
 
634 aa  440  9.999999999999999e-123  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_009076  BURPS1106A_1872  methyl-accepting chemotaxis protein  53.92 
 
 
626 aa  440  9.999999999999999e-123  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_007348  Reut_B5597  methyl-accepting chemotaxis sensory transducer  51.87 
 
 
570 aa  438  1e-121  Ralstonia eutropha JMP134  Bacteria  normal  0.253624  n/a   
 
 
-
 
NC_009074  BURPS668_1859  methyl-accepting chemotaxis protein  53.73 
 
 
621 aa  437  1e-121  Burkholderia pseudomallei 668  Bacteria  normal  0.674726  n/a   
 
 
-
 
NC_003296  RSp0507  methyl-accepting chemotaxis I  51.74 
 
 
600 aa  432  1e-120  Ralstonia solanacearum GMI1000  Bacteria  normal  normal 
 
 
-
 
NC_007510  Bcep18194_A4750  methyl-accepting chemotaxis sensory transducer  53.53 
 
 
612 aa  432  1e-120  Burkholderia sp. 383  Bacteria  normal  normal  0.445402 
 
 
-
 
NC_010622  Bphy_1232  methyl-accepting chemotaxis sensory transducer  51.75 
 
 
595 aa  432  1e-120  Burkholderia phymatum STM815  Bacteria  normal  0.0384777  normal  0.175298 
 
 
-
 
NC_007511  Bcep18194_B1158  methyl-accepting chemotaxis sensory transducer  51.65 
 
 
519 aa  431  1e-119  Burkholderia sp. 383  Bacteria  normal  normal  0.220586 
 
 
-
 
NC_008061  Bcen_3703  methyl-accepting chemotaxis sensory transducer  51.65 
 
 
519 aa  431  1e-119  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.627885  n/a   
 
 
-
 
NC_008543  Bcen2424_4665  methyl-accepting chemotaxis sensory transducer  51.65 
 
 
519 aa  431  1e-119  Burkholderia cenocepacia HI2424  Bacteria  normal  0.0344145  normal  0.449012 
 
 
-
 
NC_010515  Bcenmc03_5635  methyl-accepting chemotaxis sensory transducer  51.84 
 
 
519 aa  431  1e-119  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.264146  normal  0.57201 
 
 
-
 
NC_010552  BamMC406_4511  methyl-accepting chemotaxis sensory transducer  50.87 
 
 
519 aa  426  1e-118  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_010508  Bcenmc03_1588  methyl-accepting chemotaxis sensory transducer  52.44 
 
 
588 aa  426  1e-118  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.834305  normal 
 
 
-
 
NC_010551  BamMC406_1527  methyl-accepting chemotaxis sensory transducer  53.33 
 
 
587 aa  426  1e-118  Burkholderia ambifaria MC40-6  Bacteria  normal  0.512784  normal  0.576949 
 
 
-
 
NC_010681  Bphyt_2245  methyl-accepting chemotaxis sensory transducer  49.62 
 
 
524 aa  423  1e-117  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_007650  BTH_II1464  methyl-accepting chemotaxis protein  51.47 
 
 
518 aa  422  1e-117  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_007908  Rfer_3609  methyl-accepting chemotaxis sensory transducer  48.83 
 
 
596 aa  420  1e-116  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_007951  Bxe_A2023  methyl-accepting chemotaxis sensory transducer  49.04 
 
 
538 aa  419  1e-116  Burkholderia xenovorans LB400  Bacteria  normal  0.205381  normal 
 
 
-
 
NC_007435  BURPS1710b_A2534  methyl-accepting chemotaxis protein  50.97 
 
 
518 aa  415  9.999999999999999e-116  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_009075  BURPS668_A1358  methyl-accepting chemotaxis protein  50.97 
 
 
518 aa  415  9.999999999999999e-116  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_008060  Bcen_1131  methyl-accepting chemotaxis sensory transducer  52.35 
 
 
588 aa  416  9.999999999999999e-116  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_009078  BURPS1106A_A1280  methyl-accepting chemotaxis protein  50.97 
 
 
518 aa  415  9.999999999999999e-116  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_008391  Bamb_4055  methyl-accepting chemotaxis sensory transducer  50.68 
 
 
519 aa  415  9.999999999999999e-116  Burkholderia ambifaria AMMD  Bacteria  normal  0.242338  normal  0.634618 
 
 
-
 
NC_008542  Bcen2424_1611  methyl-accepting chemotaxis sensory transducer  52.35 
 
 
588 aa  416  9.999999999999999e-116  Burkholderia cenocepacia HI2424  Bacteria  normal  0.542582  n/a   
 
 
-
 
NC_007952  Bxe_B2494  methyl-accepting chemotaxis sensory transducer  51.66 
 
 
514 aa  415  1e-114  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_007974  Rmet_3678  methyl-accepting chemotaxis sensory transducer  51.24 
 
 
605 aa  410  1e-113  Cupriavidus metallidurans CH34  Bacteria  normal  normal  0.12372 
 
 
-
 
NC_006349  BMAA1298  methyl-accepting chemotaxis protein  49.58 
 
 
530 aa  407  1.0000000000000001e-112  Burkholderia mallei ATCC 23344  Bacteria  normal  0.09541  n/a   
 
 
-
 
NC_008784  BMASAVP1_0277  methyl-accepting chemotaxis protein  49.58 
 
 
530 aa  407  1.0000000000000001e-112  Burkholderia mallei SAVP1  Bacteria  normal  0.121986  n/a   
 
 
-
 
NC_008390  Bamb_1508  methyl-accepting chemotaxis sensory transducer  53.14 
 
 
587 aa  408  1.0000000000000001e-112  Burkholderia ambifaria AMMD  Bacteria  normal  n/a   
 
 
-
 
NC_008835  BMA10229_0548  methyl-accepting chemotaxis protein  49.58 
 
 
530 aa  407  1.0000000000000001e-112  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_007404  Tbd_1622  methyl-accepting chemotaxis sensory transducer  48.58 
 
 
572 aa  400  9.999999999999999e-111  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.415216  normal 
 
 
-
 
NC_007434  BURPS1710b_0074  methyl-accepting chemotaxis protein I  48.57 
 
 
673 aa  395  1e-109  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_010681  Bphyt_3813  methyl-accepting chemotaxis sensory transducer  48.37 
 
 
617 aa  398  1e-109  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_007951  Bxe_A0121  methyl-accepting chemotaxis sensory transducer  47.6 
 
 
618 aa  395  1e-109  Burkholderia xenovorans LB400  Bacteria  normal  normal  0.487659 
 
 
-
 
NC_009074  BURPS668_3853  methyl-accepting chemotaxis protein II  48.37 
 
 
671 aa  393  1e-108  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_009076  BURPS1106A_3934  methyl-accepting chemotaxis protein  48.57 
 
 
673 aa  395  1e-108  Burkholderia pseudomallei 1106a  Bacteria  normal  0.3175  n/a   
 
 
-
 
NC_006348  BMA2857  methyl-accepting chemotaxis protein, putative  48.57 
 
 
673 aa  394  1e-108  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_008785  BMASAVP1_A3433  putative methyl-accepting chemotaxis protein  48.57 
 
 
673 aa  394  1e-108  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_009080  BMA10247_3118  putative methyl-accepting chemotaxis protein  48.57 
 
 
673 aa  394  1e-108  Burkholderia mallei NCTC 10247  Bacteria  normal  0.0285227  n/a   
 
 
-
 
NC_007952  Bxe_B2520  methyl-accepting chemotaxis sensory transducer  44.99 
 
 
542 aa  395  1e-108  Burkholderia xenovorans LB400  Bacteria  normal  normal  0.128174 
 
 
-
 
NC_008836  BMA10229_A1686  putative methyl-accepting chemotaxis protein  48.57 
 
 
673 aa  394  1e-108  Burkholderia mallei NCTC 10229  Bacteria  normal  0.303273  n/a   
 
 
-
 
NC_010086  Bmul_4025  methyl-accepting chemotaxis sensory transducer  49.9 
 
 
519 aa  393  1e-108  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.987625  normal 
 
 
-
 
NC_010625  Bphy_6386  methyl-accepting chemotaxis sensory transducer  48.04 
 
 
542 aa  391  1e-107  Burkholderia phymatum STM815  Bacteria  normal  normal  0.864566 
 
 
-
 
NC_007510  Bcep18194_A3360  methyl-accepting chemotaxis sensory transducer  48.88 
 
 
655 aa  390  1e-107  Burkholderia sp. 383  Bacteria  normal  0.139099  normal 
 
 
-
 
NC_007951  Bxe_A4080  methyl-accepting chemotaxis sensory transducer  48.46 
 
 
549 aa  386  1e-106  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_010681  Bphyt_0620  methyl-accepting chemotaxis sensory transducer  48.39 
 
 
549 aa  387  1e-106  Burkholderia phytofirmans PsJN  Bacteria  normal  normal  0.0437284 
 
 
-
 
NC_010551  BamMC406_0184  methyl-accepting chemotaxis sensory transducer  47.35 
 
 
648 aa  387  1e-106  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_010084  Bmul_0167  methyl-accepting chemotaxis sensory transducer  48.75 
 
 
659 aa  382  1e-105  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal  0.677561 
 
 
-
 
NC_007651  BTH_I3180  methyl-accepting chemotaxis protein, putative  47.8 
 
 
666 aa  383  1e-105  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_007908  Rfer_0990  methyl-accepting chemotaxis sensory transducer  48.64 
 
 
542 aa  383  1e-105  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_012857  Rpic12D_4286  methyl-accepting chemotaxis sensory transducer  49.42 
 
 
522 aa  384  1e-105  Ralstonia pickettii 12D  Bacteria  normal  0.246906  normal  0.38481 
 
 
-
 
NC_010678  Rpic_4174  methyl-accepting chemotaxis sensory transducer  49.42 
 
 
522 aa  384  1e-105  Ralstonia pickettii 12J  Bacteria  normal  0.0753508  normal 
 
 
-
 
NC_011992  Dtpsy_0354  methyl-accepting chemotaxis sensory transducer  47.05 
 
 
578 aa  379  1e-104  Acidovorax ebreus TPSY  Bacteria  normal  0.496762  n/a   
 
 
-
 
NC_012912  Dd1591_1453  methyl-accepting chemotaxis sensory transducer  44.94 
 
 
532 aa  380  1e-104  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_008390  Bamb_0171  methyl-accepting chemotaxis sensory transducer  47.6 
 
 
648 aa  381  1e-104  Burkholderia ambifaria AMMD  Bacteria  normal  0.451768  n/a   
 
 
-
 
NC_010622  Bphy_2972  methyl-accepting chemotaxis sensory transducer  48.74 
 
 
597 aa  380  1e-104  Burkholderia phymatum STM815  Bacteria  normal  hitchhiker  0.00113075 
 
 
-
 
NC_010622  Bphy_0345  methyl-accepting chemotaxis sensory transducer  48.18 
 
 
547 aa  378  1e-103  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_010002  Daci_1600  methyl-accepting chemotaxis sensory transducer  45.78 
 
 
535 aa  377  1e-103  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_007974  Rmet_5612  methyl-accepting chemotaxis protein II  50.86 
 
 
513 aa  376  1e-103  Cupriavidus metallidurans CH34  Bacteria  normal  normal 
 
 
-
 
NC_008782  Ajs_0364  methyl-accepting chemotaxis sensory transducer  47.05 
 
 
580 aa  377  1e-103  Acidovorax sp. JS42  Bacteria  normal  normal 
 
 
-
 
NC_010508  Bcenmc03_0240  methyl-accepting chemotaxis sensory transducer  48.12 
 
 
657 aa  375  1e-102  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.0244017  normal 
 
 
-
 
NC_010676  Bphyt_5735  methyl-accepting chemotaxis sensory transducer  49.8 
 
 
510 aa  372  1e-102  Burkholderia phytofirmans PsJN  Bacteria  normal  0.0480332  normal 
 
 
-
 
NC_008060  Bcen_2849  methyl-accepting chemotaxis sensory transducer  48.12 
 
 
659 aa  375  1e-102  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008542  Bcen2424_0258  methyl-accepting chemotaxis sensory transducer  48.12 
 
 
659 aa  375  1e-102  Burkholderia cenocepacia HI2424  Bacteria  decreased coverage  0.00414638  n/a   
 
 
-
 
NC_008752  Aave_1956  methyl-accepting chemotaxis sensory transducer  54.4 
 
 
598 aa  372  1e-102  Acidovorax citrulli AAC00-1  Bacteria  normal  normal  0.0136938 
 
 
-
 
NC_010498  EcSMS35_1298  methyl-accepting chemotaxis protein II  45.83 
 
 
553 aa  369  1e-101  Escherichia coli SMS-3-5  Bacteria  normal  hitchhiker  0.00038087 
 
 
-
 
NC_007953  Bxe_C0847  methyl-accepting chemotaxis sensory transducer  45.96 
 
 
516 aa  371  1e-101  Burkholderia xenovorans LB400  Bacteria  normal  normal  0.024141 
 
 
-
 
NC_007347  Reut_A2020  histidine kinase, HAMP region: chemotaxis sensory transducer  46.92 
 
 
521 aa  367  1e-100  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_007348  Reut_B3731  methyl-accepting chemotaxis sensory transducer  57.14 
 
 
513 aa  365  1e-100  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_007908  Rfer_2225  methyl-accepting chemotaxis sensory transducer  52.13 
 
 
583 aa  367  1e-100  Rhodoferax ferrireducens T118  Bacteria  normal  0.220406  n/a   
 
 
-
 
NC_012912  Dd1591_1542  methyl-accepting chemotaxis sensory transducer  44.42 
 
 
566 aa  367  1e-100  Dickeya zeae Ech1591  Bacteria  normal  0.350049  n/a   
 
 
-
 
NC_009832  Spro_2982  methyl-accepting chemotaxis sensory transducer  47.06 
 
 
541 aa  364  2e-99  Serratia proteamaculans 568  Bacteria  normal  normal 
 
 
-
 
NC_012912  Dd1591_1804  methyl-accepting chemotaxis sensory transducer  47.75 
 
 
562 aa  361  2e-98  Dickeya zeae Ech1591  Bacteria  normal  0.0522685  n/a   
 
 
-
 
NC_008782  Ajs_0160  methyl-accepting chemotaxis sensory transducer  52.87 
 
 
579 aa  361  2e-98  Acidovorax sp. JS42  Bacteria  normal  normal 
 
 
-
 
NC_012912  Dd1591_1879  methyl-accepting chemotaxis sensory transducer  52.72 
 
 
661 aa  360  3e-98  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_010002  Daci_4877  methyl-accepting chemotaxis sensory transducer  54.5 
 
 
614 aa  360  3e-98  Delftia acidovorans SPH-1  Bacteria  normal  0.296639  normal 
 
 
-
 
NC_010524  Lcho_3216  methyl-accepting chemotaxis sensory transducer  47.4 
 
 
579 aa  360  5e-98  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_009436  Ent638_2457  methyl-accepting chemotaxis sensory transducer  44.42 
 
 
555 aa  358  9e-98  Enterobacter sp. 638  Bacteria  normal  0.890786  normal 
 
 
-
 
CP001509  ECD_01857  methyl-accepting chemotaxis protein II  45.64 
 
 
553 aa  358  9.999999999999999e-98  Escherichia coli BL21(DE3)  Bacteria  normal  0.13191  n/a   
 
 
-
 
CP001637  EcDH1_1754  methyl-accepting chemotaxis sensory transducer  45.64 
 
 
553 aa  358  9.999999999999999e-98  Escherichia coli DH1  Bacteria  normal  0.0705276  n/a   
 
 
-
 
NC_010468  EcolC_1746  methyl-accepting chemotaxis sensory transducer  45.64 
 
 
553 aa  358  9.999999999999999e-98  Escherichia coli ATCC 8739  Bacteria  normal  normal 
 
 
-
 
NC_003296  RS03153  putative methyl-accepting chemotaxis transducer transmembrane protein  56.63 
 
 
524 aa  358  9.999999999999999e-98  Ralstonia solanacearum GMI1000  Bacteria  normal  0.471775  normal  0.0817308 
 
 
-
 
NC_009800  EcHS_A1982  methyl-accepting chemotaxis protein II  45.64 
 
 
553 aa  358  9.999999999999999e-98  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_012892  B21_01846  hypothetical protein  45.64 
 
 
553 aa  358  9.999999999999999e-98  Escherichia coli BL21  Bacteria  normal  0.186429  n/a   
 
 
-
 
NC_012880  Dd703_1514  methyl-accepting chemotaxis sensory transducer  54.26 
 
 
562 aa  358  1.9999999999999998e-97  Dickeya dadantii Ech703  Bacteria  normal  0.957025  n/a   
 
 
-
 
NC_011992  Dtpsy_0178  methyl-accepting chemotaxis sensory transducer  52.39 
 
 
581 aa  357  1.9999999999999998e-97  Acidovorax ebreus TPSY  Bacteria  normal  0.62004  n/a   
 
 
-
 
NC_011353  ECH74115_2624  methyl-accepting chemotaxis protein II  45.45 
 
 
553 aa  357  2.9999999999999997e-97  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  0.784316  hitchhiker  0.00000000183949 
 
 
-
 
NC_009801  EcE24377A_2119  methyl-accepting chemotaxis protein II  45.45 
 
 
553 aa  356  5e-97  Escherichia coli E24377A  Bacteria  normal  0.0158521  n/a   
 
 
-
 
NC_008782  Ajs_2152  methyl-accepting chemotaxis sensory transducer  45.31 
 
 
589 aa  355  6.999999999999999e-97  Acidovorax sp. JS42  Bacteria  normal  normal  0.0117525 
 
 
-
 
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