More than 300 homologs were found in PanDaTox collection
for query gene RSc3412 on replicon NC_003295
Organism: Ralstonia solanacearum GMI1000



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_003295  RSc3412  putative methyl-accepting chemotaxis I (serine chemoreceptor) transmembrane protein  100 
 
 
515 aa  1004    Ralstonia solanacearum GMI1000  Bacteria  normal  normal  0.934147 
 
 
-
 
NC_010524  Lcho_3485  methyl-accepting chemotaxis sensory transducer  57.14 
 
 
573 aa  419  1e-116  Leptothrix cholodnii SP-6  Bacteria  n/a    hitchhiker  0.000328178 
 
 
-
 
NC_010524  Lcho_3216  methyl-accepting chemotaxis sensory transducer  68.66 
 
 
579 aa  415  1e-114  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_011992  Dtpsy_0354  methyl-accepting chemotaxis sensory transducer  50.29 
 
 
578 aa  397  1e-109  Acidovorax ebreus TPSY  Bacteria  normal  0.496762  n/a   
 
 
-
 
NC_008782  Ajs_0364  methyl-accepting chemotaxis sensory transducer  50.19 
 
 
580 aa  397  1e-109  Acidovorax sp. JS42  Bacteria  normal  normal 
 
 
-
 
NC_007908  Rfer_3137  methyl-accepting chemotaxis sensory transducer  66.98 
 
 
532 aa  392  1e-108  Rhodoferax ferrireducens T118  Bacteria  normal  0.310324  n/a   
 
 
-
 
NC_007908  Rfer_3937  methyl-accepting chemotaxis sensory transducer  67.52 
 
 
589 aa  395  1e-108  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_007908  Rfer_2481  methyl-accepting chemotaxis sensory transducer  64.13 
 
 
579 aa  390  1e-107  Rhodoferax ferrireducens T118  Bacteria  normal  0.37743  n/a   
 
 
-
 
NC_007908  Rfer_2749  methyl-accepting chemotaxis sensory transducer  67.31 
 
 
578 aa  389  1e-107  Rhodoferax ferrireducens T118  Bacteria  normal  0.274613  n/a   
 
 
-
 
NC_008782  Ajs_3772  methyl-accepting chemotaxis sensory transducer  61.62 
 
 
586 aa  382  1e-105  Acidovorax sp. JS42  Bacteria  normal  0.167359  normal 
 
 
-
 
NC_008825  Mpe_A0750  methyl-accepting chemotaxis sensory transducer  72.08 
 
 
592 aa  378  1e-103  Methylibium petroleiphilum PM1  Bacteria  normal  0.318431  normal  0.0335504 
 
 
-
 
NC_007908  Rfer_3609  methyl-accepting chemotaxis sensory transducer  55.53 
 
 
596 aa  377  1e-103  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_008786  Veis_2296  methyl-accepting chemotaxis sensory transducer  58.25 
 
 
584 aa  374  1e-102  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.604223  normal  0.776041 
 
 
-
 
NC_007908  Rfer_0925  methyl-accepting chemotaxis sensory transducer  50.87 
 
 
552 aa  370  1e-101  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_013421  Pecwa_1820  methyl-accepting chemotaxis sensory transducer  64.49 
 
 
553 aa  371  1e-101  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_008782  Ajs_3087  methyl-accepting chemotaxis sensory transducer  61.24 
 
 
527 aa  367  1e-100  Acidovorax sp. JS42  Bacteria  normal  normal  0.823637 
 
 
-
 
NC_008782  Ajs_2152  methyl-accepting chemotaxis sensory transducer  55.38 
 
 
589 aa  367  1e-100  Acidovorax sp. JS42  Bacteria  normal  normal  0.0117525 
 
 
-
 
NC_012917  PC1_1417  methyl-accepting chemotaxis sensory transducer  63.55 
 
 
554 aa  365  1e-100  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.37293  n/a   
 
 
-
 
NC_008752  Aave_1956  methyl-accepting chemotaxis sensory transducer  69.72 
 
 
598 aa  368  1e-100  Acidovorax citrulli AAC00-1  Bacteria  normal  normal  0.0136938 
 
 
-
 
NC_008752  Aave_2436  methyl-accepting chemotaxis sensory transducer  67.1 
 
 
539 aa  364  2e-99  Acidovorax citrulli AAC00-1  Bacteria  normal  0.633872  normal 
 
 
-
 
NC_007908  Rfer_3610  methyl-accepting chemotaxis sensory transducer  57.07 
 
 
511 aa  362  7.0000000000000005e-99  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_007908  Rfer_0990  methyl-accepting chemotaxis sensory transducer  70.14 
 
 
542 aa  362  8e-99  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_007908  Rfer_2225  methyl-accepting chemotaxis sensory transducer  63.58 
 
 
583 aa  359  6e-98  Rhodoferax ferrireducens T118  Bacteria  normal  0.220406  n/a   
 
 
-
 
NC_007908  Rfer_1480  methyl-accepting chemotaxis sensory transducer  64.35 
 
 
537 aa  358  9e-98  Rhodoferax ferrireducens T118  Bacteria  normal  0.201713  n/a   
 
 
-
 
NC_010002  Daci_4877  methyl-accepting chemotaxis sensory transducer  68.95 
 
 
614 aa  356  5e-97  Delftia acidovorans SPH-1  Bacteria  normal  0.296639  normal 
 
 
-
 
NC_012912  Dd1591_1453  methyl-accepting chemotaxis sensory transducer  44.36 
 
 
532 aa  353  5.9999999999999994e-96  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_010002  Daci_1600  methyl-accepting chemotaxis sensory transducer  54.38 
 
 
535 aa  352  1e-95  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_010002  Daci_5852  methyl-accepting chemotaxis sensory transducer  61.59 
 
 
618 aa  351  2e-95  Delftia acidovorans SPH-1  Bacteria  normal  0.217953  normal 
 
 
-
 
NC_007348  Reut_B5602  methyl-accepting chemotaxis sensory transducer  63.81 
 
 
594 aa  347  3e-94  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_007348  Reut_B4001  histidine kinase, HAMP region: chemotaxis sensory transducer  59.74 
 
 
585 aa  347  4e-94  Ralstonia eutropha JMP134  Bacteria  normal  0.0946714  n/a   
 
 
-
 
NC_008752  Aave_2241  methyl-accepting chemotaxis sensory transducer  69.37 
 
 
536 aa  347  4e-94  Acidovorax citrulli AAC00-1  Bacteria  unclonable  0.000000611014  hitchhiker  0.00000521325 
 
 
-
 
NC_008752  Aave_3880  methyl-accepting chemotaxis sensory transducer  66.78 
 
 
557 aa  345  8.999999999999999e-94  Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_010002  Daci_4297  methyl-accepting chemotaxis sensory transducer  64.9 
 
 
471 aa  345  1e-93  Delftia acidovorans SPH-1  Bacteria  decreased coverage  0.00689697  normal 
 
 
-
 
NC_008752  Aave_0428  methyl-accepting chemotaxis sensory transducer  59.87 
 
 
597 aa  342  9e-93  Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_008752  Aave_0772  methyl-accepting chemotaxis sensory transducer  60.92 
 
 
612 aa  342  9e-93  Acidovorax citrulli AAC00-1  Bacteria  normal  0.343543  normal  0.663369 
 
 
-
 
NC_007952  Bxe_B0771  methyl-accepting chemotaxis sensory transducer  58.93 
 
 
519 aa  342  1e-92  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_011992  Dtpsy_3407  methyl-accepting chemotaxis sensory transducer  61.06 
 
 
653 aa  341  2e-92  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_008782  Ajs_4062  methyl-accepting chemotaxis sensory transducer  61.06 
 
 
653 aa  341  2e-92  Acidovorax sp. JS42  Bacteria  normal  normal 
 
 
-
 
NC_008752  Aave_1960  methyl-accepting chemotaxis sensory transducer  68.64 
 
 
642 aa  341  2e-92  Acidovorax citrulli AAC00-1  Bacteria  normal  0.741418  normal  0.0148687 
 
 
-
 
NC_010676  Bphyt_6336  methyl-accepting chemotaxis sensory transducer  61.18 
 
 
581 aa  340  4e-92  Burkholderia phytofirmans PsJN  Bacteria  normal  0.794546  normal 
 
 
-
 
NC_007951  Bxe_A1341  methyl-accepting chemotaxis sensory transducer  54.96 
 
 
558 aa  339  7e-92  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_007404  Tbd_1619  chemotaxis sensory transducer  60.52 
 
 
559 aa  338  9.999999999999999e-92  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.940607  normal  0.203143 
 
 
-
 
NC_007336  Reut_C6240  chemotaxis sensory transducer  44.47 
 
 
556 aa  338  1.9999999999999998e-91  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_008752  Aave_2496  methyl-accepting chemotaxis sensory transducer  63.47 
 
 
537 aa  337  1.9999999999999998e-91  Acidovorax citrulli AAC00-1  Bacteria  decreased coverage  0.00000862286  decreased coverage  0.00394801 
 
 
-
 
NC_010676  Bphyt_4450  methyl-accepting chemotaxis sensory transducer  59.09 
 
 
519 aa  337  2.9999999999999997e-91  Burkholderia phytofirmans PsJN  Bacteria  hitchhiker  0.000313766  normal 
 
 
-
 
NC_007651  BTH_I0438  methyl-accepting chemotaxis protein  62.78 
 
 
512 aa  337  3.9999999999999995e-91  Burkholderia thailandensis E264  Bacteria  normal  0.212381  n/a   
 
 
-
 
NC_007404  Tbd_1622  methyl-accepting chemotaxis sensory transducer  43.81 
 
 
572 aa  335  7.999999999999999e-91  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.415216  normal 
 
 
-
 
NC_008752  Aave_4703  methyl-accepting chemotaxis sensory transducer  66.22 
 
 
659 aa  336  7.999999999999999e-91  Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_008752  Aave_2284  methyl-accepting chemotaxis sensory transducer  59.76 
 
 
547 aa  336  7.999999999999999e-91  Acidovorax citrulli AAC00-1  Bacteria  normal  0.206976  hitchhiker  0.0000952985 
 
 
-
 
NC_007348  Reut_B5547  methyl-accepting chemotaxis sensory transducer  58.33 
 
 
520 aa  335  1e-90  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_012791  Vapar_4185  methyl-accepting chemotaxis sensory transducer  56.74 
 
 
579 aa  335  1e-90  Variovorax paradoxus S110  Bacteria  normal  0.356775  n/a   
 
 
-
 
NC_007951  Bxe_A4159  methyl-accepting chemotaxis sensory transducer  62.14 
 
 
611 aa  335  2e-90  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_010002  Daci_0742  methyl-accepting chemotaxis sensory transducer  46.48 
 
 
581 aa  335  2e-90  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_010622  Bphy_0289  methyl-accepting chemotaxis sensory transducer  61.81 
 
 
598 aa  334  3e-90  Burkholderia phymatum STM815  Bacteria  normal  normal  0.759991 
 
 
-
 
NC_012912  Dd1591_1542  methyl-accepting chemotaxis sensory transducer  46.74 
 
 
566 aa  333  3e-90  Dickeya zeae Ech1591  Bacteria  normal  0.350049  n/a   
 
 
-
 
NC_007974  Rmet_3683  methyl-accepting chemotaxis sensory transducer  62.66 
 
 
613 aa  334  3e-90  Cupriavidus metallidurans CH34  Bacteria  normal  0.755698  normal  0.0578518 
 
 
-
 
NC_009076  BURPS1106A_0520  methyl-accepting chemotaxis protein  62.66 
 
 
546 aa  333  4e-90  Burkholderia pseudomallei 1106a  Bacteria  normal  0.640738  n/a   
 
 
-
 
NC_006348  BMA3184  methyl-accepting chemotaxis protein  62.66 
 
 
511 aa  333  4e-90  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_007434  BURPS1710b_0685  methyl-accepting chemotaxis protein  62.66 
 
 
526 aa  333  4e-90  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_011992  Dtpsy_0353  methyl-accepting chemotaxis sensory transducer with Cache sensor  59.74 
 
 
564 aa  333  4e-90  Acidovorax ebreus TPSY  Bacteria  normal  0.244374  n/a   
 
 
-
 
NC_008785  BMASAVP1_A0157  methyl-accepting chemotaxis protein  62.66 
 
 
546 aa  333  4e-90  Burkholderia mallei SAVP1  Bacteria  normal  0.293853  n/a   
 
 
-
 
NC_009080  BMA10247_2862  methyl-accepting chemotaxis protein  62.66 
 
 
546 aa  333  4e-90  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_008836  BMA10229_A1435  methyl-accepting chemotaxis protein  62.66 
 
 
546 aa  333  4e-90  Burkholderia mallei NCTC 10229  Bacteria  normal  0.631191  n/a   
 
 
-
 
NC_008752  Aave_2643  methyl-accepting chemotaxis sensory transducer  59.34 
 
 
541 aa  333  4e-90  Acidovorax citrulli AAC00-1  Bacteria  normal  0.0238907  normal  0.0164957 
 
 
-
 
NC_008752  Aave_3444  methyl-accepting chemotaxis sensory transducer  57.34 
 
 
517 aa  333  4e-90  Acidovorax citrulli AAC00-1  Bacteria  normal  0.679068  normal  0.0634638 
 
 
-
 
NC_007947  Mfla_2154  methyl-accepting chemotaxis sensory transducer  58.46 
 
 
569 aa  332  7.000000000000001e-90  Methylobacillus flagellatus KT  Bacteria  normal  normal 
 
 
-
 
NC_003295  RSc2799  putative methyl-accepting chemotaxis transmembrane protein  58.46 
 
 
515 aa  332  8e-90  Ralstonia solanacearum GMI1000  Bacteria  decreased coverage  0.00825356  normal  0.849966 
 
 
-
 
NC_009074  BURPS668_0502  methyl-accepting chemotaxis protein  62.34 
 
 
546 aa  332  8e-90  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_008825  Mpe_A2548  methyl-accepting chemotaxis protein  57.71 
 
 
525 aa  332  9e-90  Methylibium petroleiphilum PM1  Bacteria  decreased coverage  0.00975221  normal  0.500866 
 
 
-
 
NC_010681  Bphyt_0557  methyl-accepting chemotaxis sensory transducer  61.17 
 
 
627 aa  331  1e-89  Burkholderia phytofirmans PsJN  Bacteria  normal  0.191348  normal  0.480006 
 
 
-
 
NC_011992  Dtpsy_2974  methyl-accepting chemotaxis sensory transducer with Cache sensor  56.12 
 
 
579 aa  331  2e-89  Acidovorax ebreus TPSY  Bacteria  hitchhiker  0.00885268  n/a   
 
 
-
 
NC_010681  Bphyt_2793  methyl-accepting chemotaxis sensory transducer  56.13 
 
 
573 aa  330  3e-89  Burkholderia phytofirmans PsJN  Bacteria  normal  0.22826  normal  0.238924 
 
 
-
 
NC_010627  Bphy_7569  methyl-accepting chemotaxis sensory transducer  43.05 
 
 
576 aa  329  9e-89  Burkholderia phymatum STM815  Bacteria  normal  0.448898  normal  0.153923 
 
 
-
 
NC_012856  Rpic12D_2632  methyl-accepting chemotaxis sensory transducer with Cache sensor  59.81 
 
 
515 aa  329  9e-89  Ralstonia pickettii 12D  Bacteria  normal  0.397554  normal  0.945455 
 
 
-
 
NC_010682  Rpic_3042  methyl-accepting chemotaxis sensory transducer  59.5 
 
 
515 aa  328  2.0000000000000001e-88  Ralstonia pickettii 12J  Bacteria  normal  0.401177  normal 
 
 
-
 
NC_003296  RS02605  putative methyl-accepting chemotaxis transducer transmembrane protein  62.62 
 
 
513 aa  327  3e-88  Ralstonia solanacearum GMI1000  Bacteria  normal  0.0414906  normal  0.0642458 
 
 
-
 
NC_010002  Daci_4878  methyl-accepting chemotaxis sensory transducer  69.12 
 
 
589 aa  327  4.0000000000000003e-88  Delftia acidovorans SPH-1  Bacteria  normal  0.506831  normal 
 
 
-
 
NC_012791  Vapar_4188  methyl-accepting chemotaxis sensory transducer with Cache sensor  62.95 
 
 
566 aa  327  4.0000000000000003e-88  Variovorax paradoxus S110  Bacteria  normal  0.210427  n/a   
 
 
-
 
NC_013421  Pecwa_0106  methyl-accepting chemotaxis sensory transducer  56.11 
 
 
556 aa  326  6e-88  Pectobacterium wasabiae WPP163  Bacteria  normal  0.405526  n/a   
 
 
-
 
NC_008782  Ajs_3664  methyl-accepting chemotaxis sensory transducer  55.52 
 
 
598 aa  326  7e-88  Acidovorax sp. JS42  Bacteria  normal  0.197645  normal 
 
 
-
 
NC_007510  Bcep18194_A4084  methyl-accepting chemotaxis sensory transducer  62.06 
 
 
511 aa  326  8.000000000000001e-88  Burkholderia sp. 383  Bacteria  normal  0.51282  normal  0.262349 
 
 
-
 
NC_013421  Pecwa_0104  methyl-accepting chemotaxis sensory transducer  56.57 
 
 
548 aa  325  8.000000000000001e-88  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_007974  Rmet_5935  methyl-accepting chemotaxis sensory transducer  60.9 
 
 
520 aa  325  8.000000000000001e-88  Cupriavidus metallidurans CH34  Bacteria  normal  normal 
 
 
-
 
NC_009483  Gura_2167  methyl-accepting chemotaxis sensory transducer  65.03 
 
 
585 aa  324  2e-87  Geobacter uraniireducens Rf4  Bacteria  normal  0.38945  n/a   
 
 
-
 
NC_010717  PXO_00041  chemotaxis protein  61.02 
 
 
752 aa  323  3e-87  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  0.292066  n/a   
 
 
-
 
NC_010551  BamMC406_2751  methyl-accepting chemotaxis sensory transducer  60.57 
 
 
521 aa  323  4e-87  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_012880  Dd703_3865  methyl-accepting chemotaxis sensory transducer  50.82 
 
 
551 aa  323  4e-87  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_008825  Mpe_A0586  methyl-accepting chemotaxis sensory transducer  63.96 
 
 
584 aa  323  6e-87  Methylibium petroleiphilum PM1  Bacteria  normal  normal 
 
 
-
 
NC_010682  Rpic_0995  methyl-accepting chemotaxis sensory transducer  61.64 
 
 
621 aa  322  8e-87  Ralstonia pickettii 12J  Bacteria  normal  normal  0.203772 
 
 
-
 
NC_010717  PXO_00047  chemotaxis protein  67.84 
 
 
733 aa  322  8e-87  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  n/a   
 
 
-
 
NC_003296  RS04782  methyl-accepting chemotaxis transducer transmembrane protein  55.33 
 
 
543 aa  322  9.999999999999999e-87  Ralstonia solanacearum GMI1000  Bacteria  normal  normal 
 
 
-
 
NC_008825  Mpe_A2663  methyl-accepting chemotaxis sensory transducer  63.07 
 
 
520 aa  322  9.999999999999999e-87  Methylibium petroleiphilum PM1  Bacteria  normal  0.0198398  normal 
 
 
-
 
NC_012917  PC1_4071  methyl-accepting chemotaxis sensory transducer  41.23 
 
 
553 aa  322  9.999999999999999e-87  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_012880  Dd703_3864  methyl-accepting chemotaxis sensory transducer  45.17 
 
 
543 aa  322  9.999999999999999e-87  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_008390  Bamb_2891  methyl-accepting chemotaxis sensory transducer  60.22 
 
 
521 aa  322  9.999999999999999e-87  Burkholderia ambifaria AMMD  Bacteria  normal  0.657214  n/a   
 
 
-
 
NC_010678  Rpic_4237  methyl-accepting chemotaxis sensory transducer  61.64 
 
 
513 aa  321  1.9999999999999998e-86  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_012857  Rpic12D_4347  methyl-accepting chemotaxis sensory transducer with Cache sensor  61.64 
 
 
513 aa  321  1.9999999999999998e-86  Ralstonia pickettii 12D  Bacteria  normal  normal  0.473159 
 
 
-
 
NC_007974  Rmet_5641  methyl-accepting chemotaxis sensory transducer  54.49 
 
 
519 aa  321  1.9999999999999998e-86  Cupriavidus metallidurans CH34  Bacteria  normal  normal 
 
 
-
 
NC_012880  Dd703_1719  methyl-accepting chemotaxis sensory transducer with Cache sensor  56.27 
 
 
517 aa  321  1.9999999999999998e-86  Dickeya dadantii Ech703  Bacteria  unclonable  0.00000712436  n/a   
 
 
-
 
NC_012856  Rpic12D_1091  methyl-accepting chemotaxis sensory transducer with Cache sensor  61.31 
 
 
618 aa  321  1.9999999999999998e-86  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
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