More than 300 homologs were found in PanDaTox collection
for query gene PP_2257 on replicon NC_002947
Organism: Pseudomonas putida KT2440



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_002947  PP_2257  aerotaxis receptor Aer-1  100 
 
 
521 aa  1040    Pseudomonas putida KT2440  Bacteria  normal  0.215452  normal  0.0215353 
 
 
-
 
NC_010322  PputGB1_1888  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  96.55 
 
 
521 aa  953    Pseudomonas putida GB-1  Bacteria  normal  0.378373  normal 
 
 
-
 
NC_009512  Pput_3481  methyl-accepting chemotaxis sensory transducer  98.46 
 
 
521 aa  1025    Pseudomonas putida F1  Bacteria  normal  normal  0.41765 
 
 
-
 
NC_002947  PP_4521  aerotaxis receptor, putative  52.49 
 
 
521 aa  482  1e-135  Pseudomonas putida KT2440  Bacteria  normal  normal 
 
 
-
 
NC_009512  Pput_1390  methyl-accepting chemotaxis sensory transducer  52.68 
 
 
534 aa  481  1e-134  Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_009439  Pmen_1800  methyl-accepting chemotaxis sensory transducer  52.09 
 
 
521 aa  479  1e-134  Pseudomonas mendocina ymp  Bacteria  normal  0.258308  normal  0.504821 
 
 
-
 
NC_004578  PSPTO_1648  aerotaxis receptor  50.38 
 
 
521 aa  474  1e-132  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_3735  PAS  50.57 
 
 
521 aa  472  1e-132  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal  0.065462 
 
 
-
 
NC_010322  PputGB1_4027  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  51.92 
 
 
521 aa  474  1e-132  Pseudomonas putida GB-1  Bacteria  normal  0.664053  normal  0.0821551 
 
 
-
 
NC_010501  PputW619_3813  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  51.53 
 
 
521 aa  469  1.0000000000000001e-131  Pseudomonas putida W619  Bacteria  normal  0.629648  normal  0.0156802 
 
 
-
 
NC_010501  PputW619_1630  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  47.82 
 
 
521 aa  450  1e-125  Pseudomonas putida W619  Bacteria  normal  normal  0.814601 
 
 
-
 
NC_004578  PSPTO_2014  aerotaxis receptor  48 
 
 
521 aa  451  1e-125  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_3406  PAS  48 
 
 
521 aa  449  1e-125  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.387271  normal  0.671486 
 
 
-
 
NC_007492  Pfl01_1833  chemotaxis sensory transducer, Pas/Pac sensor  48.38 
 
 
521 aa  450  1e-125  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.884809  normal 
 
 
-
 
NC_009656  PSPA7_3770  aerotaxis receptor Aer  47.63 
 
 
521 aa  446  1.0000000000000001e-124  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_44300  aerotaxis receptor Aer  47.63 
 
 
521 aa  447  1.0000000000000001e-124  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_002947  PP_2111  aerotaxis receptor Aer-2  46.87 
 
 
521 aa  444  1e-123  Pseudomonas putida KT2440  Bacteria  normal  normal  0.0317394 
 
 
-
 
NC_009439  Pmen_1902  methyl-accepting chemotaxis sensory transducer  46.97 
 
 
521 aa  442  1e-123  Pseudomonas mendocina ymp  Bacteria  hitchhiker  0.00326538  normal  0.948878 
 
 
-
 
NC_009512  Pput_3628  methyl-accepting chemotaxis sensory transducer  46.87 
 
 
521 aa  444  1e-123  Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_010322  PputGB1_1653  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  46.87 
 
 
521 aa  442  9.999999999999999e-123  Pseudomonas putida GB-1  Bacteria  normal  0.976535  normal  0.292811 
 
 
-
 
NC_009438  Sputcn32_3109  methyl-accepting chemotaxis sensory transducer  45.9 
 
 
522 aa  436  1e-121  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_008740  Maqu_0262  methyl-accepting chemotaxis sensory transducer  45.15 
 
 
524 aa  416  9.999999999999999e-116  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_3595  methyl-accepting chemotaxis sensory transducer  42.8 
 
 
515 aa  410  1e-113  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_011138  MADE_03783  Methyl-accepting chemotaxis protein (PAS/PAC and MSP doamins)  43.49 
 
 
527 aa  388  1e-106  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_011901  Tgr7_1324  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  43.29 
 
 
523 aa  384  1e-105  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.587106  n/a   
 
 
-
 
NC_008740  Maqu_0389  methyl-accepting chemotaxis sensory transducer  48.17 
 
 
419 aa  366  1e-100  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_008345  Sfri_1214  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  41.63 
 
 
527 aa  368  1e-100  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_013889  TK90_0580  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  42.53 
 
 
521 aa  352  1e-95  Thioalkalivibrio sp. K90mix  Bacteria  normal  normal  0.0413099 
 
 
-
 
NC_010506  Swoo_4186  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  39.7 
 
 
526 aa  352  1e-95  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_008577  Shewana3_0582  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  40.2 
 
 
524 aa  345  1e-93  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_007492  Pfl01_4658  chemotaxis sensory transducer, Pas/Pac sensor  40.46 
 
 
529 aa  345  2e-93  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_009439  Pmen_4451  methyl-accepting chemotaxis sensory transducer  43.6 
 
 
531 aa  341  2e-92  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_008321  Shewmr4_0583  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  38.6 
 
 
524 aa  335  1e-90  Shewanella sp. MR-4  Bacteria  normal  normal  0.344402 
 
 
-
 
NC_008322  Shewmr7_3447  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  38.6 
 
 
524 aa  335  2e-90  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_009456  VC0395_0250  methyl-accepting chemotaxis protein  36.71 
 
 
518 aa  333  4e-90  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_009997  Sbal195_3908  methyl-accepting chemotaxis sensory transducer  39.64 
 
 
524 aa  332  7.000000000000001e-90  Shewanella baltica OS195  Bacteria  normal  normal 
 
 
-
 
NC_009052  Sbal_0543  methyl-accepting chemotaxis sensory transducer  39.64 
 
 
524 aa  332  1e-89  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_011663  Sbal223_3725  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  39.64 
 
 
524 aa  332  1e-89  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_009665  Shew185_3782  methyl-accepting chemotaxis sensory transducer  39.24 
 
 
524 aa  330  4e-89  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_009438  Sputcn32_3294  methyl-accepting chemotaxis sensory transducer  39.17 
 
 
524 aa  319  9e-86  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_008789  Hhal_0974  methyl-accepting chemotaxis sensory transducer  40.15 
 
 
532 aa  318  2e-85  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_3460  methyl-accepting chemotaxis sensory transducer  36.03 
 
 
520 aa  318  2e-85  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_004347  SO_0584  methyl-accepting chemotaxis protein  37.4 
 
 
524 aa  314  2.9999999999999996e-84  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009901  Spea_1860  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  36.47 
 
 
524 aa  310  5e-83  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_009438  Sputcn32_1196  methyl-accepting chemotaxis sensory transducer  36 
 
 
522 aa  303  7.000000000000001e-81  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_009092  Shew_2159  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  38.11 
 
 
523 aa  299  7e-80  Shewanella loihica PV-4  Bacteria  normal  0.416992  normal  0.881373 
 
 
-
 
NC_008789  Hhal_1125  methyl-accepting chemotaxis sensory transducer  37.2 
 
 
532 aa  297  3e-79  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_004347  SO_1385  methyl-accepting chemotaxis protein  37.35 
 
 
520 aa  296  4e-79  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_004347  SO_3404  methyl-accepting chemotaxis protein  37.21 
 
 
522 aa  294  3e-78  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_013457  VEA_001512  aerotaxis sensor receptor protein  34.17 
 
 
516 aa  294  3e-78  Vibrio sp. Ex25  Bacteria  normal  0.961146  n/a   
 
 
-
 
NC_008321  Shewmr4_2808  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  37.82 
 
 
522 aa  293  4e-78  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_008322  Shewmr7_2891  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  37.55 
 
 
522 aa  293  4e-78  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_008740  Maqu_3270  methyl-accepting chemotaxis sensory transducer  35.87 
 
 
532 aa  291  1e-77  Marinobacter aquaeolei VT8  Bacteria  normal  0.415489  n/a   
 
 
-
 
NC_009665  Shew185_3097  methyl-accepting chemotaxis sensory transducer  37.14 
 
 
522 aa  291  1e-77  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_009831  Ssed_2690  methyl-accepting chemotaxis sensory transducer with PAS/Pac sensor  35.69 
 
 
524 aa  291  2e-77  Shewanella sediminis HAW-EB3  Bacteria  normal  0.487789  normal 
 
 
-
 
NC_008577  Shewana3_2987  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  36.76 
 
 
522 aa  291  2e-77  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_009665  Shew185_1282  methyl-accepting chemotaxis sensory transducer  36.61 
 
 
522 aa  291  3e-77  Shewanella baltica OS185  Bacteria  normal  0.13527  n/a   
 
 
-
 
NC_011663  Sbal223_1280  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  37.14 
 
 
522 aa  291  3e-77  Shewanella baltica OS223  Bacteria  normal  normal  0.160306 
 
 
-
 
NC_009997  Sbal195_3240  methyl-accepting chemotaxis sensory transducer  36.53 
 
 
533 aa  289  8e-77  Shewanella baltica OS195  Bacteria  normal  normal 
 
 
-
 
NC_010002  Daci_5286  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  39.15 
 
 
519 aa  289  8e-77  Delftia acidovorans SPH-1  Bacteria  normal  0.982796  normal 
 
 
-
 
NC_009997  Sbal195_1317  methyl-accepting chemotaxis sensory transducer  36.73 
 
 
522 aa  288  2e-76  Shewanella baltica OS195  Bacteria  normal  normal  0.0176898 
 
 
-
 
NC_009052  Sbal_1238  methyl-accepting chemotaxis sensory transducer  36.73 
 
 
522 aa  288  2e-76  Shewanella baltica OS155  Bacteria  normal  0.0615962  n/a   
 
 
-
 
NC_011663  Sbal223_3073  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  36.73 
 
 
522 aa  288  2e-76  Shewanella baltica OS223  Bacteria  normal  hitchhiker  0.000000000166485 
 
 
-
 
NC_009052  Sbal_3087  methyl-accepting chemotaxis sensory transducer  36.53 
 
 
522 aa  287  2.9999999999999996e-76  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_009438  Sputcn32_2726  methyl-accepting chemotaxis sensory transducer  35.58 
 
 
538 aa  287  2.9999999999999996e-76  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_008700  Sama_0995  putative methyl-accepting chemotaxis sensory transducer  38.39 
 
 
517 aa  283  4.0000000000000003e-75  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_008577  Shewana3_1150  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  37.35 
 
 
522 aa  283  7.000000000000001e-75  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_010506  Swoo_3519  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  36.2 
 
 
514 aa  283  7.000000000000001e-75  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_008322  Shewmr7_1220  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  37.18 
 
 
522 aa  283  8.000000000000001e-75  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_008321  Shewmr4_1149  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  37.04 
 
 
522 aa  282  1e-74  Shewanella sp. MR-4  Bacteria  normal  0.737349  normal 
 
 
-
 
NC_003910  CPS_4927  methyl-accepting chemotaxis protein/sensory box protein  33.72 
 
 
511 aa  280  3e-74  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_003910  CPS_1621  methyl-accepting chemotaxis protein  34.18 
 
 
513 aa  275  1.0000000000000001e-72  Colwellia psychrerythraea 34H  Bacteria  normal  0.113175  n/a   
 
 
-
 
NC_009831  Ssed_1987  methyl-accepting chemotaxis sensory transducer with PAS/Pac sensor  33.69 
 
 
518 aa  270  5e-71  Shewanella sediminis HAW-EB3  Bacteria  normal  0.185607  normal  0.0170041 
 
 
-
 
NC_009901  Spea_0337  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  31.6 
 
 
517 aa  268  1e-70  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_009901  Spea_3023  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  34.43 
 
 
514 aa  268  2e-70  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_008782  Ajs_3295  methyl-accepting chemotaxis sensory transducer  37.07 
 
 
519 aa  266  5e-70  Acidovorax sp. JS42  Bacteria  normal  normal 
 
 
-
 
NC_008345  Sfri_3219  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  34.14 
 
 
516 aa  266  5.999999999999999e-70  Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.1353  n/a   
 
 
-
 
NC_007298  Daro_0674  PAS  35.87 
 
 
544 aa  260  5.0000000000000005e-68  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_008752  Aave_2113  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  35.34 
 
 
550 aa  259  7e-68  Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_008228  Patl_2247  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  34.92 
 
 
511 aa  256  7e-67  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_009092  Shew_2577  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  36.2 
 
 
524 aa  255  1.0000000000000001e-66  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_011992  Dtpsy_2648  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  34.68 
 
 
520 aa  254  3e-66  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_007404  Tbd_2406  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  35.89 
 
 
566 aa  251  3e-65  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  normal 
 
 
-
 
NC_007947  Mfla_1933  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  34.35 
 
 
598 aa  251  3e-65  Methylobacillus flagellatus KT  Bacteria  normal  normal 
 
 
-
 
NC_008700  Sama_0532  putative methyl-accepting chemotaxis sensory transducer  34.22 
 
 
523 aa  250  4e-65  Shewanella amazonensis SB2B  Bacteria  normal  normal  0.0374128 
 
 
-
 
NC_007404  Tbd_1618  chemotaxis sensory transducer  33.03 
 
 
557 aa  249  1e-64  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  normal  0.126465 
 
 
-
 
NC_010002  Daci_2372  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  35.18 
 
 
579 aa  248  3e-64  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_007348  Reut_B5601  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  35.29 
 
 
551 aa  248  3e-64  Ralstonia eutropha JMP134  Bacteria  normal  0.510218  n/a   
 
 
-
 
NC_010623  Bphy_4269  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  34.98 
 
 
556 aa  247  4e-64  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_007974  Rmet_3682  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  34.91 
 
 
552 aa  244  3.9999999999999997e-63  Cupriavidus metallidurans CH34  Bacteria  normal  normal  0.0302709 
 
 
-
 
NC_007952  Bxe_B2984  methyl-accepting chemotaxis sensory transducer, Pas/Pac sensor  35.95 
 
 
565 aa  243  7.999999999999999e-63  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_007908  Rfer_0120  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  33.65 
 
 
519 aa  242  1e-62  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_009456  VC0395_0602  methyl-accepting chemotaxis protein  36.42 
 
 
536 aa  240  4e-62  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_010676  Bphyt_6942  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  35.84 
 
 
566 aa  239  8e-62  Burkholderia phytofirmans PsJN  Bacteria  normal  0.819674  normal 
 
 
-
 
NC_008825  Mpe_A2920  aerotaxis sensor receptor  33.71 
 
 
549 aa  239  1e-61  Methylibium petroleiphilum PM1  Bacteria  normal  normal 
 
 
-
 
NC_006348  BMA0264  methyl-accepting chemotaxis protein  33.83 
 
 
580 aa  237  4e-61  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_008836  BMA10229_A2390  methyl-accepting chemotaxis protein  33.83 
 
 
580 aa  237  4e-61  Burkholderia mallei NCTC 10229  Bacteria  normal  0.790589  n/a   
 
 
-
 
NC_008785  BMASAVP1_A2685  methyl-accepting chemotaxis protein  33.83 
 
 
580 aa  237  4e-61  Burkholderia mallei SAVP1  Bacteria  normal  0.394636  n/a   
 
 
-
 
NC_009080  BMA10247_2473  methyl-accepting chemotaxis protein  33.83 
 
 
580 aa  237  4e-61  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_008391  Bamb_4714  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  32.57 
 
 
535 aa  237  5.0000000000000005e-61  Burkholderia ambifaria AMMD  Bacteria  normal  normal 
 
 
-
 
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