More than 300 homologs were found in PanDaTox collection
for query gene Mnod_4871 on replicon NC_011894
Organism: Methylobacterium nodulans ORS 2060



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011894  Mnod_4871  transcriptional regulator, Crp/Fnr family  100 
 
 
228 aa  456  1e-127  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_5386  transcriptional regulator, Crp/Fnr family  55.78 
 
 
230 aa  228  5e-59  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.662421  n/a   
 
 
-
 
NC_011757  Mchl_3812  transcriptional regulator, Crp/Fnr family  49.34 
 
 
229 aa  214  9.999999999999999e-55  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_010172  Mext_3505  regulatory protein Crp  52.43 
 
 
229 aa  213  2.9999999999999995e-54  Methylobacterium extorquens PA1  Bacteria  normal  0.021842  normal 
 
 
-
 
NC_010511  M446_6927  Crp/FNR family transcriptional regulator  54.68 
 
 
227 aa  206  2e-52  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.422372 
 
 
-
 
NC_007964  Nham_1951  transcriptional regulator FixK  54.84 
 
 
231 aa  206  3e-52  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_011004  Rpal_4729  transcriptional regulator FixK  50.22 
 
 
230 aa  204  1e-51  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_6107  Crp/FNR family transcriptional regulator  56.19 
 
 
227 aa  203  2e-51  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.0266042 
 
 
-
 
NC_009485  BBta_2786  transcriptional regulator FixK  49.56 
 
 
229 aa  202  3e-51  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.0460697  normal  0.11454 
 
 
-
 
NC_007958  RPD_1340  transcriptional regulator FixK  54.36 
 
 
229 aa  201  7e-51  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.324269  normal 
 
 
-
 
NC_007778  RPB_1361  transcriptional regulator FixK  54.36 
 
 
229 aa  200  9.999999999999999e-51  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.0646149  normal 
 
 
-
 
NC_007925  RPC_4055  transcriptional regulator FixK  53.37 
 
 
229 aa  197  7.999999999999999e-50  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_0408  Crp/FNR family transcriptional regulator  58.47 
 
 
230 aa  195  6e-49  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_007406  Nwi_1036  transcriptional regulator FixK  47.53 
 
 
231 aa  192  3e-48  Nitrobacter winogradskyi Nb-255  Bacteria  normal  normal 
 
 
-
 
NC_010725  Mpop_3889  transcriptional regulator, Crp/Fnr family  52.31 
 
 
229 aa  190  2e-47  Methylobacterium populi BJ001  Bacteria  normal  normal  0.128439 
 
 
-
 
NC_007964  Nham_0870  transcriptional regulator FixK  52.66 
 
 
227 aa  184  8e-46  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_007960  Nham_4375  Crp/FNR family transcriptional regulator  53.98 
 
 
268 aa  178  7e-44  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_010338  Caul_2975  Crp/FNR family transcriptional regulator  44.95 
 
 
220 aa  159  2e-38  Caulobacter sp. K31  Bacteria  normal  0.169439  normal  0.307783 
 
 
-
 
NC_010338  Caul_0629  transcriptional regulator FixK  46.63 
 
 
215 aa  159  3e-38  Caulobacter sp. K31  Bacteria  normal  0.595222  normal  0.236212 
 
 
-
 
NC_010505  Mrad2831_2581  Crp/FNR family transcriptional regulator  50.31 
 
 
222 aa  156  3e-37  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_3277  Crp/FNR family transcriptional regulator  46.88 
 
 
226 aa  152  2.9999999999999998e-36  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_011666  Msil_1823  transcriptional regulator, Crp/Fnr family  50 
 
 
234 aa  152  4e-36  Methylocella silvestris BL2  Bacteria  n/a    normal  0.0333657 
 
 
-
 
NC_007958  RPD_3266  cyclic nucleotide-binding  46.59 
 
 
220 aa  146  3e-34  Rhodopseudomonas palustris BisB5  Bacteria  normal  decreased coverage  0.00116153 
 
 
-
 
NC_010338  Caul_2457  Crp/FNR family transcriptional regulator  43.58 
 
 
204 aa  144  8.000000000000001e-34  Caulobacter sp. K31  Bacteria  normal  0.325923  normal  0.600278 
 
 
-
 
NC_009621  Smed_6270  transcriptional regulator FixK  44.38 
 
 
211 aa  144  1e-33  Sinorhizobium medicae WSM419  Bacteria  normal  0.967473  normal  0.128199 
 
 
-
 
NC_009720  Xaut_1746  CRP/FNR family transcriptional regulator  43.3 
 
 
236 aa  140  9.999999999999999e-33  Xanthobacter autotrophicus Py2  Bacteria  normal  0.753218  normal  0.546792 
 
 
-
 
NC_009719  Plav_2039  CRP/FNR family transcriptional regulator  40 
 
 
242 aa  136  3.0000000000000003e-31  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.191538  hitchhiker  0.00387918 
 
 
-
 
NC_008254  Meso_2220  transcriptional regulator FixK  45.76 
 
 
224 aa  134  9e-31  Chelativorans sp. BNC1  Bacteria  normal  0.552775  n/a   
 
 
-
 
NC_009475  BBta_p0192  CRP family transcriptional regulator  41.18 
 
 
230 aa  134  1.9999999999999998e-30  Bradyrhizobium sp. BTAi1  Bacteria  n/a    normal 
 
 
-
 
NC_007778  RPB_2158  Crp/FNR family transcriptional regulator  38.78 
 
 
208 aa  131  6.999999999999999e-30  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.198273  normal  0.103025 
 
 
-
 
NC_009485  BBta_5746  Crp/FNR family transcriptional regulator  39.66 
 
 
237 aa  126  3e-28  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.765257  normal 
 
 
-
 
NC_009621  Smed_5184  transcriptional regulator FixK  43.08 
 
 
211 aa  124  2e-27  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.639909 
 
 
-
 
NC_007643  Rru_A3322  Crp/FNR family transcriptional regulator  35.52 
 
 
262 aa  123  2e-27  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.0702622  n/a   
 
 
-
 
NC_011894  Mnod_0422  transcriptional regulator, Crp/Fnr family  42.77 
 
 
246 aa  122  6e-27  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_007958  RPD_1357  Crp/Fnr family transcriptional regulator  43.37 
 
 
239 aa  119  3e-26  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_4713  transcriptional regulator, Crp/Fnr family  43.37 
 
 
239 aa  119  4.9999999999999996e-26  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.557049  n/a   
 
 
-
 
NC_007778  RPB_1377  Crp/FNR family transcriptional regulator  42.77 
 
 
239 aa  118  6e-26  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_6132  Crp/FNR family transcriptional regulator  41.18 
 
 
245 aa  117  9.999999999999999e-26  Methylobacterium sp. 4-46  Bacteria  normal  0.0884478  normal 
 
 
-
 
NC_010172  Mext_1357  cyclic nucleotide-binding  39.64 
 
 
250 aa  115  6.9999999999999995e-25  Methylobacterium extorquens PA1  Bacteria  normal  normal  0.395788 
 
 
-
 
NC_011757  Mchl_1557  transcriptional regulator, Crp/Fnr family  39.64 
 
 
250 aa  114  8.999999999999998e-25  Methylobacterium chloromethanicum CM4  Bacteria  decreased coverage  0.00717235  normal 
 
 
-
 
NC_010725  Mpop_1302  transcriptional regulator, Crp/Fnr family  39.64 
 
 
254 aa  113  2.0000000000000002e-24  Methylobacterium populi BJ001  Bacteria  normal  0.0109091  normal 
 
 
-
 
NC_011894  Mnod_5030  transcriptional regulator, Crp/Fnr family  39.66 
 
 
238 aa  113  3e-24  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_3926  transcriptional regulator, Crp/Fnr family  39.66 
 
 
238 aa  113  3e-24  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_0946  Crp/FNR family transcriptional regulator  42.94 
 
 
253 aa  112  4.0000000000000004e-24  Methylobacterium sp. 4-46  Bacteria  normal  0.336903  normal 
 
 
-
 
NC_007925  RPC_4039  Crp/FNR family transcriptional regulator  40.36 
 
 
239 aa  110  3e-23  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.70749  normal 
 
 
-
 
NC_004310  BR0654  Crp/FNR family transcriptional regulator  36.16 
 
 
248 aa  108  6e-23  Brucella suis 1330  Bacteria  normal  0.48838  n/a   
 
 
-
 
NC_011989  Avi_1273  cAMP-binding protein  34.66 
 
 
243 aa  108  8.000000000000001e-23  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_007953  Bxe_C0749  Crp/FNR family transcriptional regulator  34.18 
 
 
242 aa  108  1e-22  Burkholderia xenovorans LB400  Bacteria  normal  0.887641  normal  0.079497 
 
 
-
 
NC_009505  BOV_0647  nitrogen fixation regulation protein fixk  36.16 
 
 
251 aa  107  2e-22  Brucella ovis ATCC 25840  Bacteria  normal  0.774151  n/a   
 
 
-
 
NC_009484  Acry_1631  CRP/FNR family transcriptional regulator  38.98 
 
 
310 aa  105  6e-22  Acidiphilium cryptum JF-5  Bacteria  normal  n/a   
 
 
-
 
NC_009667  Oant_2634  CRP/FNR family transcriptional regulator  35.03 
 
 
249 aa  105  7e-22  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_009636  Smed_1742  CRP/FNR family transcriptional regulator  35.58 
 
 
242 aa  104  1e-21  Sinorhizobium medicae WSM419  Bacteria  normal  0.275504  normal  0.265558 
 
 
-
 
NC_010531  Pnec_1356  transcriptional regulator, Crp/Fnr family  36.41 
 
 
256 aa  104  1e-21  Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria  normal  normal  0.0588975 
 
 
-
 
NC_009511  Swit_1945  Crp/FNR family transcriptional regulator  35.29 
 
 
242 aa  102  5e-21  Sphingomonas wittichii RW1  Bacteria  normal  normal 
 
 
-
 
NC_011901  Tgr7_0212  putative transcriptional regulator, Crp/Fnr family  33.17 
 
 
254 aa  101  7e-21  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_6164  transcriptional regulator, Crp/Fnr family  36.72 
 
 
247 aa  101  9e-21  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.257657  n/a   
 
 
-
 
NC_007912  Sde_1464  transcriptional activator Anr  35.58 
 
 
244 aa  100  2e-20  Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_007948  Bpro_1170  Crp/FNR family transcriptional regulator  34.55 
 
 
274 aa  100  2e-20  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_013456  VEA_003475  fumarate and nitrate reduction regulatory protein  31.94 
 
 
248 aa  99.8  3e-20  Vibrio sp. Ex25  Bacteria  normal  0.292896  n/a   
 
 
-
 
NC_008700  Sama_1799  fumarate/nitrate reduction transcriptional regulator  32.32 
 
 
250 aa  98.2  9e-20  Shewanella amazonensis SB2B  Bacteria  normal  0.417815  normal  0.180258 
 
 
-
 
NC_008345  Sfri_2018  fumarate/nitrate reduction transcriptional regulator  29.11 
 
 
252 aa  98.2  9e-20  Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.831368  n/a   
 
 
-
 
NC_012850  Rleg_2360  transcriptional regulator, Crp/Fnr family  35.06 
 
 
240 aa  97.8  1e-19  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.948966  hitchhiker  0.00636029 
 
 
-
 
NC_008577  Shewana3_2115  fumarate/nitrate reduction transcriptional regulator  30.99 
 
 
250 aa  97.4  1e-19  Shewanella sp. ANA-3  Bacteria  normal  0.508722  normal  0.0650668 
 
 
-
 
NC_009783  VIBHAR_02295  fumarate/nitrate reduction transcriptional regulator  30.73 
 
 
248 aa  97.8  1e-19  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_009428  Rsph17025_0532  CRP/FNR family transcriptional regulator  31.96 
 
 
248 aa  97.8  1e-19  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal  0.283437 
 
 
-
 
NC_007951  Bxe_A3927  Crp/FNR family transcriptional regulator  31.41 
 
 
242 aa  97.4  1e-19  Burkholderia xenovorans LB400  Bacteria  normal  0.729399  hitchhiker  0.00211875 
 
 
-
 
NC_008321  Shewmr4_2014  fumarate/nitrate reduction transcriptional regulator  30.99 
 
 
250 aa  97.4  1e-19  Shewanella sp. MR-4  Bacteria  normal  decreased coverage  0.00000000422436 
 
 
-
 
NC_009035  Sbal_4495  fumarate/nitrate reduction transcriptional regulator  30.41 
 
 
250 aa  96.7  2e-19  Shewanella baltica OS155  Bacteria  n/a    n/a   
 
 
-
 
NC_009436  Ent638_1853  fumarate/nitrate reduction transcriptional regulator  28.92 
 
 
250 aa  96.7  2e-19  Enterobacter sp. 638  Bacteria  normal  normal  0.755428 
 
 
-
 
NC_009997  Sbal195_2212  fumarate/nitrate reduction transcriptional regulator  30.41 
 
 
250 aa  96.7  2e-19  Shewanella baltica OS195  Bacteria  hitchhiker  0.00299596  normal  0.266977 
 
 
-
 
NC_009438  Sputcn32_1951  fumarate/nitrate reduction transcriptional regulator  30.41 
 
 
250 aa  97.1  2e-19  Shewanella putrefaciens CN-32  Bacteria  normal  0.80493  n/a   
 
 
-
 
NC_009654  Mmwyl1_2233  CRP/FNR family transcriptional regulator  31.07 
 
 
253 aa  97.4  2e-19  Marinomonas sp. MWYL1  Bacteria  normal  0.0375344  normal  0.791743 
 
 
-
 
NC_009457  VC0395_A1045  fumarate/nitrate reduction transcriptional regulator  31.75 
 
 
250 aa  97.1  2e-19  Vibrio cholerae O395  Bacteria  normal  0.18077  n/a   
 
 
-
 
NC_011663  Sbal223_2222  fumarate/nitrate reduction transcriptional regulator  30.41 
 
 
250 aa  96.7  2e-19  Shewanella baltica OS223  Bacteria  decreased coverage  0.00000942023  normal  0.178468 
 
 
-
 
NC_009052  Sbal_2209  fumarate/nitrate reduction transcriptional regulator  30.41 
 
 
250 aa  96.7  2e-19  Shewanella baltica OS155  Bacteria  hitchhiker  0.00613295  n/a   
 
 
-
 
NC_011365  Gdia_1984  transcriptional regulator, Crp/Fnr family  38.6 
 
 
250 aa  97.1  2e-19  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  0.312779  normal 
 
 
-
 
NC_009665  Shew185_2162  fumarate/nitrate reduction transcriptional regulator  30.41 
 
 
250 aa  96.7  2e-19  Shewanella baltica OS185  Bacteria  normal  0.914647  n/a   
 
 
-
 
NC_008322  Shewmr7_1961  fumarate/nitrate reduction transcriptional regulator  30.99 
 
 
250 aa  97.1  2e-19  Shewanella sp. MR-7  Bacteria  normal  hitchhiker  0.00754009 
 
 
-
 
NC_011989  Avi_2026  transcriptional activator Crp family  31.03 
 
 
241 aa  96.7  3e-19  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_004347  SO_2356  fumarate/nitrate reduction transcriptional regulator  30.39 
 
 
254 aa  96.7  3e-19  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009092  Shew_1993  fumarate/nitrate reduction transcriptional regulator  30.72 
 
 
249 aa  96.7  3e-19  Shewanella loihica PV-4  Bacteria  normal  0.238952  normal 
 
 
-
 
NC_009485  BBta_7766  nitrogen fixation regulation protein fixK  35.06 
 
 
235 aa  96.7  3e-19  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.701843  normal  0.257497 
 
 
-
 
NC_009831  Ssed_2219  fumarate/nitrate reduction transcriptional regulator  29.55 
 
 
249 aa  96.3  4e-19  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_009049  Rsph17029_2353  CRP/FNR family transcriptional regulator  31.94 
 
 
248 aa  95.9  4e-19  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.689366  normal  0.139893 
 
 
-
 
NC_007493  RSP_0698  Crp-Fnr regulatory protein (FnrL)  31.94 
 
 
248 aa  95.9  4e-19  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_012912  Dd1591_2081  fumarate/nitrate reduction transcriptional regulator  28.86 
 
 
250 aa  95.9  4e-19  Dickeya zeae Ech1591  Bacteria  normal  0.0488524  n/a   
 
 
-
 
NC_012880  Dd703_1864  fumarate/nitrate reduction transcriptional regulator  28.86 
 
 
250 aa  96.3  4e-19  Dickeya dadantii Ech703  Bacteria  normal  0.856056  n/a   
 
 
-
 
CP001637  EcDH1_2311  transcriptional regulator, Crp/Fnr family  28.43 
 
 
250 aa  95.5  5e-19  Escherichia coli DH1  Bacteria  normal  0.144598  n/a   
 
 
-
 
NC_010498  EcSMS35_1788  fumarate/nitrate reduction transcriptional regulator  28.43 
 
 
250 aa  95.5  5e-19  Escherichia coli SMS-3-5  Bacteria  normal  0.765276  normal 
 
 
-
 
NC_009901  Spea_2222  fumarate/nitrate reduction transcriptional regulator  28.98 
 
 
250 aa  95.9  5e-19  Shewanella pealeana ATCC 700345  Bacteria  normal  0.0665535  n/a   
 
 
-
 
NC_011369  Rleg2_2118  transcriptional regulator, Crp/Fnr family  32.87 
 
 
240 aa  95.5  5e-19  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  hitchhiker  0.00291012 
 
 
-
 
NC_009379  Pnuc_0460  CRP/FNR family transcriptional regulator  36.31 
 
 
256 aa  95.9  5e-19  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  n/a   
 
 
-
 
NC_010468  EcolC_2291  fumarate/nitrate reduction transcriptional regulator  28.43 
 
 
250 aa  95.5  5e-19  Escherichia coli ATCC 8739  Bacteria  normal  normal 
 
 
-
 
NC_009800  EcHS_A1450  fumarate/nitrate reduction transcriptional regulator  28.43 
 
 
250 aa  95.5  5e-19  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_010658  SbBS512_E1575  fumarate/nitrate reduction transcriptional regulator  28.43 
 
 
250 aa  95.5  5e-19  Shigella boydii CDC 3083-94  Bacteria  normal  n/a   
 
 
-
 
NC_011353  ECH74115_1981  fumarate/nitrate reduction transcriptional regulator  28.43 
 
 
250 aa  95.5  5e-19  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal  0.320226 
 
 
-
 
NC_009801  EcE24377A_1546  fumarate/nitrate reduction transcriptional regulator  28.43 
 
 
250 aa  95.5  5e-19  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_011205  SeD_A1673  fumarate/nitrate reduction transcriptional regulator  28.43 
 
 
250 aa  95.5  6e-19  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.349784  normal  0.0983377 
 
 
-
 
NC_011094  SeSA_A1785  fumarate/nitrate reduction transcriptional regulator  28.43 
 
 
250 aa  95.5  6e-19  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  0.377507  normal  0.141635 
 
 
-
 
NC_011149  SeAg_B1491  fumarate/nitrate reduction transcriptional regulator  28.43 
 
 
250 aa  95.5  6e-19  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  0.0202312  n/a   
 
 
-
 
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