More than 300 homologs were found in PanDaTox collection
for query gene Vapar_2069 on replicon NC_012791
Organism: Variovorax paradoxus S110



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_012791  Vapar_2069  extracellular solute-binding protein family 5  100 
 
 
518 aa  1010    Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_007947  Mfla_2388  extracellular solute-binding protein  51.02 
 
 
522 aa  476  1e-133  Methylobacillus flagellatus KT  Bacteria  normal  normal 
 
 
-
 
NC_010725  Mpop_3809  extracellular solute-binding protein family 5  51.67 
 
 
521 aa  458  1e-127  Methylobacterium populi BJ001  Bacteria  normal  0.406271  normal 
 
 
-
 
NC_008686  Pden_1341  extracellular solute-binding protein  49.79 
 
 
500 aa  446  1.0000000000000001e-124  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_012560  Avin_51940  extracellular solute-binding protein  47.84 
 
 
510 aa  404  1e-111  Azotobacter vinelandii DJ  Bacteria  decreased coverage  0.000130332  n/a   
 
 
-
 
NC_009654  Mmwyl1_2017  extracellular solute-binding protein  40.91 
 
 
523 aa  397  1e-109  Marinomonas sp. MWYL1  Bacteria  normal  0.0245155  normal 
 
 
-
 
NC_009456  VC0395_0145  ABC transporter, periplasmic substrate-binding protein  41.8 
 
 
521 aa  381  1e-104  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_007355  Mbar_A1979  oligopeptide ABC transporter, solute-binding protein  30.21 
 
 
516 aa  239  6.999999999999999e-62  Methanosarcina barkeri str. Fusaro  Archaea  normal  normal 
 
 
-
 
NC_007796  Mhun_0210  extracellular solute-binding protein  29.71 
 
 
512 aa  235  2.0000000000000002e-60  Methanospirillum hungatei JF-1  Archaea  normal  0.0873116  normal 
 
 
-
 
NC_013216  Dtox_0450  extracellular solute-binding protein family 5  30.82 
 
 
519 aa  223  6e-57  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  normal  0.15126 
 
 
-
 
NC_007355  Mbar_A1284  oligopeptide ABC transporter, solute-binding protein  30.88 
 
 
545 aa  217  4e-55  Methanosarcina barkeri str. Fusaro  Archaea  decreased coverage  0.000669385  normal 
 
 
-
 
NC_007355  Mbar_A0645  oligopeptide ABC transporter, solute-binding protein  29.9 
 
 
524 aa  213  7.999999999999999e-54  Methanosarcina barkeri str. Fusaro  Archaea  normal  normal 
 
 
-
 
NC_013743  Htur_2405  extracellular solute-binding protein family 5  28.65 
 
 
518 aa  177  6e-43  Haloterrigena turkmenica DSM 5511  Archaea  n/a    n/a   
 
 
-
 
NC_007796  Mhun_0218  extracellular solute-binding protein  26.13 
 
 
537 aa  169  9e-41  Methanospirillum hungatei JF-1  Archaea  normal  0.219975  normal  0.837771 
 
 
-
 
NC_013216  Dtox_0365  extracellular solute-binding protein family 5  28.87 
 
 
517 aa  142  9.999999999999999e-33  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  normal 
 
 
-
 
NC_007355  Mbar_A3678  oligopeptide ABC transporter, oligopeptide-binding protein  26.75 
 
 
525 aa  142  1.9999999999999998e-32  Methanosarcina barkeri str. Fusaro  Archaea  normal  normal  0.0885273 
 
 
-
 
NC_004311  BRA0804  nickel ABC transporter, nickel-binding protein, putative  29.81 
 
 
526 aa  139  8.999999999999999e-32  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_009504  BOV_A0754  nickel ABC transporter, periplasmic nickel-binding protein  29.81 
 
 
526 aa  139  8.999999999999999e-32  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_008942  Mlab_0723  hypothetical protein  25.93 
 
 
527 aa  138  2e-31  Methanocorpusculum labreanum Z  Archaea  normal  0.703564  normal  0.46015 
 
 
-
 
NC_007355  Mbar_A2032  ABC transporter, periplasmic binding protein  25.42 
 
 
524 aa  137  6.0000000000000005e-31  Methanosarcina barkeri str. Fusaro  Archaea  normal  0.662418  normal  0.30348 
 
 
-
 
NC_012880  Dd703_0273  nickel ABC transporter, periplasmic nickel-binding protein  28.63 
 
 
525 aa  134  3e-30  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_1571  4-phytase  30.13 
 
 
510 aa  134  5e-30  Streptosporangium roseum DSM 43021  Bacteria  normal  0.624152  normal 
 
 
-
 
NC_009674  Bcer98_0219  extracellular solute-binding protein  25.21 
 
 
575 aa  132  1.0000000000000001e-29  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_009952  Dshi_2595  putative extracellular solute-binding protein  28.57 
 
 
507 aa  131  2.0000000000000002e-29  Dinoroseobacter shibae DFL 12  Bacteria  normal  hitchhiker  0.00975919 
 
 
-
 
NC_010424  Daud_0391  extracellular solute-binding protein  28.45 
 
 
522 aa  132  2.0000000000000002e-29  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  n/a   
 
 
-
 
NC_013216  Dtox_0351  nickel ABC transporter, periplasmic nickel- binding protein  25.59 
 
 
532 aa  130  7.000000000000001e-29  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  normal 
 
 
-
 
NC_008942  Mlab_0722  radical SAM domain-containing protein  24.7 
 
 
522 aa  130  8.000000000000001e-29  Methanocorpusculum labreanum Z  Archaea  normal  normal  0.597639 
 
 
-
 
NC_007005  Psyr_2542  extracellular solute-binding protein  27.59 
 
 
521 aa  129  1.0000000000000001e-28  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.0150221  normal 
 
 
-
 
NC_009621  Smed_5080  extracellular solute-binding protein  27.18 
 
 
502 aa  129  1.0000000000000001e-28  Sinorhizobium medicae WSM419  Bacteria  normal  0.0526207  normal 
 
 
-
 
NC_013739  Cwoe_2781  extracellular solute-binding protein family 5  28.06 
 
 
519 aa  129  2.0000000000000002e-28  Conexibacter woesei DSM 14684  Bacteria  normal  0.187703  normal  0.0364487 
 
 
-
 
NC_007355  Mbar_A3677  oligopeptide ABC transporter, oligopeptide-binding protein  23.61 
 
 
520 aa  128  2.0000000000000002e-28  Methanosarcina barkeri str. Fusaro  Archaea  normal  0.969921  normal  0.0940549 
 
 
-
 
NC_004578  PSPTO_2814  peptide ABC transporter, periplasmic peptide-binding protein  27.69 
 
 
521 aa  127  4.0000000000000003e-28  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.1277  n/a   
 
 
-
 
NC_008009  Acid345_1988  ABC peptide transporter, periplasmic ligand binding protein  30.45 
 
 
505 aa  127  4.0000000000000003e-28  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.693495  normal  0.584075 
 
 
-
 
NC_011981  Avi_7613  nickel ABC transporter periplasmic nickel-binding protein  28.71 
 
 
526 aa  127  6e-28  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_011830  Dhaf_0337  extracellular solute-binding protein family 5  22.87 
 
 
521 aa  126  1e-27  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_011883  Ddes_1032  nickel ABC transporter, periplasmic nickel-binding protein  26.72 
 
 
544 aa  126  1e-27  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  unclonable  0.00000591223  n/a   
 
 
-
 
NC_010498  EcSMS35_3760  nickel ABC transporter, periplasmic nickel-binding protein NikA  25.6 
 
 
524 aa  125  2e-27  Escherichia coli SMS-3-5  Bacteria  normal  normal 
 
 
-
 
NC_011658  BCAH187_A0266  extracellular solute-binding protein family 5  24.31 
 
 
575 aa  125  2e-27  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_008687  Pden_4285  extracellular solute-binding protein  29.35 
 
 
530 aa  125  2e-27  Paracoccus denitrificans PD1222  Bacteria  normal  0.261799  normal  0.839381 
 
 
-
 
NC_011886  Achl_0028  extracellular solute-binding protein family 5  30.7 
 
 
520 aa  124  4e-27  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal  0.0183012 
 
 
-
 
NC_008254  Meso_2648  extracellular solute-binding protein  28.57 
 
 
524 aa  124  5e-27  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_013164  Apre_1771  extracellular solute-binding protein family 5  27.54 
 
 
547 aa  124  5e-27  Anaerococcus prevotii DSM 20548  Bacteria  normal  n/a   
 
 
-
 
NC_009800  EcHS_A3675  nickel ABC transporter, periplasmic nickel-binding protein NikA  25.6 
 
 
524 aa  123  9e-27  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_010571  Oter_2438  extracellular solute-binding protein  29.85 
 
 
526 aa  123  9e-27  Opitutus terrae PB90-1  Bacteria  normal  normal 
 
 
-
 
NC_010682  Rpic_2087  extracellular solute-binding protein family 5  30.5 
 
 
522 aa  123  9e-27  Ralstonia pickettii 12J  Bacteria  normal  0.159106  normal  0.621098 
 
 
-
 
CP001509  ECD_03325  nickel transporter subunit  25.6 
 
 
524 aa  122  9.999999999999999e-27  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_0239  nickel ABC transporter, periplasmic nickel-binding protein  25.6 
 
 
524 aa  122  9.999999999999999e-27  Escherichia coli DH1  Bacteria  normal  n/a   
 
 
-
 
NC_009487  SaurJH9_2494  nickel ABC transporter, periplasmic nickel-binding protein  24.34 
 
 
532 aa  122  9.999999999999999e-27  Staphylococcus aureus subsp. aureus JH9  Bacteria  normal  0.0259695  n/a   
 
 
-
 
NC_012892  B21_03278  hypothetical protein  25.6 
 
 
524 aa  122  9.999999999999999e-27  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_011353  ECH74115_4816  nickel ABC transporter, periplasmic nickel-binding protein NikA  25.6 
 
 
524 aa  122  9.999999999999999e-27  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal 
 
 
-
 
NC_009801  EcE24377A_3958  nickel ABC transporter, periplasmic nickel-binding protein NikA  25.6 
 
 
524 aa  122  9.999999999999999e-27  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_009632  SaurJH1_2543  nickel ABC transporter, periplasmic nickel-binding protein  24.34 
 
 
532 aa  122  9.999999999999999e-27  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  0.0657942  n/a   
 
 
-
 
NC_010468  EcolC_0240  nickel ABC transporter, periplasmic nickel-binding protein  25.6 
 
 
524 aa  122  9.999999999999999e-27  Escherichia coli ATCC 8739  Bacteria  normal  normal 
 
 
-
 
NC_004116  SAG1518  peptide ABC transporter, peptide-binding protein  26.29 
 
 
538 aa  121  1.9999999999999998e-26  Streptococcus agalactiae 2603V/R  Bacteria  unclonable  0.000374669  n/a   
 
 
-
 
NC_009972  Haur_0370  extracellular solute-binding protein  26.5 
 
 
497 aa  122  1.9999999999999998e-26  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.735975  n/a   
 
 
-
 
NC_011772  BCG9842_B5080  oligopeptide-binding protein OppA  26.18 
 
 
575 aa  122  1.9999999999999998e-26  Bacillus cereus G9842  Bacteria  normal  normal 
 
 
-
 
NC_011725  BCB4264_A0245  oligopeptide-binding protein OppA  26.18 
 
 
575 aa  122  1.9999999999999998e-26  Bacillus cereus B4264  Bacteria  normal  0.0551474  n/a   
 
 
-
 
NC_013170  Ccur_04510  ABC-type dipeptide transport system, periplasmic component  28.26 
 
 
551 aa  122  1.9999999999999998e-26  Cryptobacterium curtum DSM 15641  Bacteria  normal  0.23612  normal 
 
 
-
 
NC_013171  Apre_0689  extracellular solute-binding protein family 5  27.25 
 
 
544 aa  122  1.9999999999999998e-26  Anaerococcus prevotii DSM 20548  Bacteria  normal  n/a   
 
 
-
 
NC_007908  Rfer_3103  extracellular solute-binding protein  29.97 
 
 
519 aa  121  3e-26  Rhodoferax ferrireducens T118  Bacteria  normal  0.376049  n/a   
 
 
-
 
NC_012856  Rpic12D_1764  extracellular solute-binding protein family 5  30.5 
 
 
526 aa  121  3.9999999999999996e-26  Ralstonia pickettii 12D  Bacteria  normal  normal  0.295464 
 
 
-
 
NC_008254  Meso_0563  extracellular solute-binding protein  26.33 
 
 
536 aa  121  3.9999999999999996e-26  Chelativorans sp. BNC1  Bacteria  normal  0.0406443  n/a   
 
 
-
 
NC_010658  SbBS512_E3845  nickel ABC transporter, periplasmic nickel-binding protein NikA  25.4 
 
 
524 aa  120  6e-26  Shigella boydii CDC 3083-94  Bacteria  normal  n/a   
 
 
-
 
NC_011769  DvMF_2402  nickel ABC transporter, periplasmic nickel-binding protein  26.28 
 
 
538 aa  120  7.999999999999999e-26  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_003295  RSc1886  periplasmic dipeptide transport protein precursor  27.97 
 
 
525 aa  119  1.9999999999999998e-25  Ralstonia solanacearum GMI1000  Bacteria  normal  0.105927  normal  0.91526 
 
 
-
 
NC_005957  BT9727_0205  oligopeptide ABC transporter, oligopeptide-binding protein  23.42 
 
 
575 aa  118  1.9999999999999998e-25  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_007355  Mbar_A0473  nickel ABC transporter, solute-binding protein  24.56 
 
 
538 aa  119  1.9999999999999998e-25  Methanosarcina barkeri str. Fusaro  Archaea  normal  normal 
 
 
-
 
NC_009620  Smed_3985  extracellular solute-binding protein  27.67 
 
 
499 aa  118  1.9999999999999998e-25  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_009073  Pcal_0422  extracellular solute-binding protein  28.26 
 
 
525 aa  119  1.9999999999999998e-25  Pyrobaculum calidifontis JCM 11548  Archaea  n/a    normal 
 
 
-
 
NC_010718  Nther_2645  4-phytase  23.73 
 
 
532 aa  119  1.9999999999999998e-25  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  0.292677  normal 
 
 
-
 
NC_008701  Pisl_0602  extracellular solute-binding protein  26.67 
 
 
545 aa  117  3e-25  Pyrobaculum islandicum DSM 4184  Archaea  normal  0.497567  hitchhiker  0.000000266408 
 
 
-
 
NC_010510  Mrad2831_6076  nickel ABC transporter, periplasmic nickel-binding protein  27.86 
 
 
524 aa  118  3e-25  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.814144  normal 
 
 
-
 
NC_009436  Ent638_1834  nickel ABC transporter, periplasmic nickel-binding protein  25.6 
 
 
523 aa  117  3.9999999999999997e-25  Enterobacter sp. 638  Bacteria  normal  0.250373  hitchhiker  0.0023879 
 
 
-
 
NC_003909  BCE_0248  oligopeptide ABC transporter, oligopeptide-binding protein, putative  23.42 
 
 
575 aa  117  5e-25  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_010184  BcerKBAB4_0208  extracellular solute-binding protein  24.05 
 
 
575 aa  117  5e-25  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_002976  SERP1994  ABC transporter, substrate-binding protein  22.29 
 
 
491 aa  117  6e-25  Staphylococcus epidermidis RP62A  Bacteria  normal  n/a   
 
 
-
 
NC_002976  SERP2372  peptide ABC transporter, peptide-binding protein  24.95 
 
 
532 aa  117  6e-25  Staphylococcus epidermidis RP62A  Bacteria  normal  n/a   
 
 
-
 
NC_010505  Mrad2831_3243  extracellular solute-binding protein  27.35 
 
 
509 aa  117  6e-25  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.649697  normal 
 
 
-
 
NC_007530  GBAA_0231  oligopeptide ABC transporter oligopeptide-binding protein  23.26 
 
 
555 aa  116  7.999999999999999e-25  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_009620  Smed_4029  extracellular solute-binding protein  29.26 
 
 
502 aa  116  7.999999999999999e-25  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_006274  BCZK0209  oligopeptide ABC transporter, oligopeptide-binding protein  23.26 
 
 
575 aa  115  1.0000000000000001e-24  Bacillus cereus E33L  Bacteria  normal  0.019765  n/a   
 
 
-
 
NC_008541  Arth_2548  extracellular solute-binding protein  27.02 
 
 
584 aa  116  1.0000000000000001e-24  Arthrobacter sp. FB24  Bacteria  hitchhiker  0.0070372  n/a   
 
 
-
 
NC_009715  CCV52592_1321  nickel ABC transporter, periplasmic nickel-binding protein  25.05 
 
 
513 aa  115  1.0000000000000001e-24  Campylobacter curvus 525.92  Bacteria  unclonable  0.00000477414  n/a   
 
 
-
 
NC_011773  BCAH820_0241  putative oligopeptide ABC transporter, oligopeptide-binding protein  23.26 
 
 
575 aa  115  2.0000000000000002e-24  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_005945  BAS0218  oligopeptide ABC transporter oligopeptide-binding protein  23.48 
 
 
559 aa  115  2.0000000000000002e-24  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_013512  Sdel_2033  nickel ABC transporter, periplasmic nickel- binding protein  24.37 
 
 
530 aa  114  4.0000000000000004e-24  Sulfurospirillum deleyianum DSM 6946  Bacteria  normal  n/a   
 
 
-
 
NC_009921  Franean1_2510  extracellular solute-binding protein  32.45 
 
 
519 aa  114  4.0000000000000004e-24  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_013216  Dtox_0542  extracellular solute-binding protein family 5  22.11 
 
 
537 aa  114  5e-24  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  normal  0.578152 
 
 
-
 
NC_012034  Athe_1913  extracellular solute-binding protein family 5  24.9 
 
 
535 aa  114  6e-24  Anaerocellum thermophilum DSM 6725  Bacteria  normal  0.988615  n/a   
 
 
-
 
NC_011981  Avi_7212  ABC transporter substrate binding protein (oligopeptide)  25.84 
 
 
531 aa  113  6e-24  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_4832  putative ABC transporter (substrate binding protein)  29.7 
 
 
551 aa  113  9e-24  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.264059  normal  0.92248 
 
 
-
 
NC_012848  Rleg_5398  extracellular solute-binding protein family 5  32.84 
 
 
506 aa  113  1.0000000000000001e-23  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_008261  CPF_2555  oligopeptide/dipeptide ABC transporter, oligopeptide/dipeptide-binding protein  22.44 
 
 
580 aa  112  2.0000000000000002e-23  Clostridium perfringens ATCC 13124  Bacteria  normal  n/a   
 
 
-
 
NC_008262  CPR_2258  solute-binding family 5 protein  22.44 
 
 
579 aa  112  2.0000000000000002e-23  Clostridium perfringens SM101  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_5142  4-phytase  28.12 
 
 
531 aa  111  3e-23  Methylobacterium sp. 4-46  Bacteria  normal  0.303319  normal  0.0209906 
 
 
-
 
NC_007347  Reut_A1926  extracellular solute-binding protein  28.57 
 
 
518 aa  111  4.0000000000000004e-23  Ralstonia eutropha JMP134  Bacteria  normal  0.293523  n/a   
 
 
-
 
NC_011658  BCAH187_A0265  oligopeptide-binding protein OppA  21.57 
 
 
566 aa  110  4.0000000000000004e-23  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_007948  Bpro_0139  extracellular solute-binding protein  25.11 
 
 
520 aa  111  4.0000000000000004e-23  Polaromonas sp. JS666  Bacteria  normal  normal  0.382397 
 
 
-
 
NC_012791  Vapar_3003  extracellular solute-binding protein family 5  25.16 
 
 
516 aa  111  4.0000000000000004e-23  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_012912  Dd1591_2223  extracellular solute-binding protein family 5  29.09 
 
 
502 aa  111  4.0000000000000004e-23  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
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