56 decreased-coverage genes were found for selected organism/s



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Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
Strop_0264  CDS  NC_009380  300770  301786  1017  GCN5-related N-acetyltransferase  YP_001157127  normal  decreased coverage  0.000116384  Salinispora tropica CNB-440  Bacteria 
 
 
-
 
Strop_0288  CDS  NC_009380  330282  331202  921  phosphate ABC transporter, inner membrane subunit PstA  YP_001157151  decreased coverage  0.00554507  normal  0.233786  Salinispora tropica CNB-440  Bacteria 
 
 
-
 
Strop_0474  CDS  NC_009380  537101  541057  3957  cell divisionFtsK/SpoIIIE  YP_001157337  normal  0.0770518  decreased coverage  0.00818473  Salinispora tropica CNB-440  Bacteria 
 
 
-
 
Strop_0476  CDS  NC_009380  542592  543353  762  hypothetical protein  YP_001157339  normal  decreased coverage  0.00963036  Salinispora tropica CNB-440  Bacteria 
 
 
-
 
Strop_1231  CDS  NC_009380  1389105  1391021  1917  dihydroxy-acid dehydratase  YP_001158079  decreased coverage  0.00143562  normal  0.953695  Salinispora tropica CNB-440  Bacteria 
 
 
-
 
Strop_1260  CDS  NC_009380  1422379  1423092  714  histone family protein DNA-binding protein  YP_001158108  decreased coverage  0.00209562  normal  0.663698  Salinispora tropica CNB-440  Bacteria 
 
 
-
 
Strop_1510  CDS  NC_009380  1721007  1723115  2109  hypothetical protein  YP_001158354  normal  decreased coverage  0.00655438  Salinispora tropica CNB-440  Bacteria 
 
 
-
 
Strop_1511  CDS  NC_009380  1723108  1723599  492  hypothetical protein  YP_001158355  normal  0.523376  decreased coverage  0.00417665  Salinispora tropica CNB-440  Bacteria 
 
 
-
 
Strop_1526  CDS  NC_009380  1735517  1737583  2067  3-hydroxyacyl-CoA dehydrogenase, NAD-binding  YP_001158370  decreased coverage  0.00910014  normal  0.16396  Salinispora tropica CNB-440  Bacteria 
 
 
-
 
Strop_1823  CDS  NC_009380  2086167  2087561  1395  major facilitator transporter  YP_001158663  decreased coverage  0.000162964  normal  0.991228  Salinispora tropica CNB-440  Bacteria 
 
 
-
 
Strop_1824  CDS  NC_009380  2087754  2089187  1434  recombination factor protein RarA  YP_001158664  decreased coverage  0.00142888  normal  0.964955  Salinispora tropica CNB-440  Bacteria 
 
 
-
 
Strop_1932  CDS  NC_009380  2207198  2208061  864  integrase catalytic subunit  YP_001158772  decreased coverage  0.00436726  normal  0.0854041  Salinispora tropica CNB-440  Bacteria 
 
 
-
 
Strop_1933  CDS  NC_009380  2208058  2208366  309  transposase IS3/IS911 family protein  YP_001158773  decreased coverage  0.00315482  normal  0.132738  Salinispora tropica CNB-440  Bacteria 
 
 
-
 
Strop_2103  CDS  NC_009380  2376888  2377619  732  hypothetical protein  YP_001158932  decreased coverage  0.000719716  normal  0.302438  Salinispora tropica CNB-440  Bacteria 
 
 
-
 
Strop_2131  CDS  NC_009380  2408231  2409682  1452  ATPase domain-containing protein  YP_001158960  normal  0.0675603  decreased coverage  0.00126356  Salinispora tropica CNB-440  Bacteria 
 
 
-
 
Strop_2132  CDS  NC_009380  2409728  2411887  2160  glycosyl transferase family protein  YP_001158961  decreased coverage  0.00802467  hitchhiker  0.00453375  Salinispora tropica CNB-440  Bacteria 
 
 
-
 
Strop_2165  CDS  NC_009380  2450735  2451442  708  phosphoglycerate mutase  YP_001158994  decreased coverage  0.00557331  normal  Salinispora tropica CNB-440  Bacteria 
 
 
-
 
Strop_2251  CDS  NC_009380  2545364  2545612  249  hypothetical protein  YP_001159079  decreased coverage  0.00164399  normal  0.755858  Salinispora tropica CNB-440  Bacteria 
 
 
-
 
Strop_2265  CDS  NC_009380  2559781  2561343  1563  hypothetical protein  YP_001159093  decreased coverage  6.5205e-07  normal  0.10942  Salinispora tropica CNB-440  Bacteria 
 
 
-
 
Strop_2329  CDS  NC_009380  2622208  2623368  1161  aminotransferase, class I and II  YP_001159155  normal  0.202877  decreased coverage  0.00110828  Salinispora tropica CNB-440  Bacteria 
 
 
-
 
Strop_2330  CDS  NC_009380  2623369  2623980  612  helix-turn-helix domain-containing protein  YP_001159156  normal  0.699676  decreased coverage  0.000887341  Salinispora tropica CNB-440  Bacteria 
 
 
-
 
Strop_2331  CDS  NC_009380  2624011  2624868  858  short chain dehydrogenase  YP_001159157  normal  decreased coverage  0.000899921  Salinispora tropica CNB-440  Bacteria 
 
 
-
 
Strop_2332  CDS  NC_009380  2624978  2625592  615  regulatory protein, TetR  YP_001159158  normal  decreased coverage  0.000899921  Salinispora tropica CNB-440  Bacteria 
 
 
-
 
Strop_2333  CDS  NC_009380  2625814  2626461  648  major intrinsic protein  YP_001159159  normal  decreased coverage  0.000971735  Salinispora tropica CNB-440  Bacteria 
 
 
-
 
Strop_2334  CDS  NC_009380  2626505  2627473  969  phage integrase family protein  YP_001159160  normal  decreased coverage  0.00113164  Salinispora tropica CNB-440  Bacteria 
 
 
-
 
Strop_2395  CDS  NC_009380  2689384  2690169  786  hypothetical protein  YP_001159220  decreased coverage  0.00354329  normal  Salinispora tropica CNB-440  Bacteria 
 
 
-
 
Strop_2525  CDS  NC_009380  2838279  2839637  1359  cobyrinic acid a,c-diamide synthase  YP_001159348  decreased coverage  0.00158406  normal  Salinispora tropica CNB-440  Bacteria 
 
 
-
 
Strop_2526  CDS  NC_009380  2839631  2840242  612  cob(I)yrinic acid a,c-diamide adenosyltransferase  YP_001159349  decreased coverage  0.00173055  normal  Salinispora tropica CNB-440  Bacteria 
 
 
-
 
Strop_2620  CDS  NC_009380  2941801  2942763  963  proline iminopeptidase  YP_001159442  decreased coverage  0.000526602  normal  0.51631  Salinispora tropica CNB-440  Bacteria 
 
 
-
 
Strop_2621  CDS  NC_009380  2942832  2944019  1188  lipid-transfer protein  YP_001159443  decreased coverage  0.000528338  normal  0.352624  Salinispora tropica CNB-440  Bacteria 
 
 
-
 
Strop_2644  CDS  NC_009380  2967096  2968271  1176  acetyl-CoA acetyltransferase  YP_001159466  decreased coverage  0.000531608  normal  0.301355  Salinispora tropica CNB-440  Bacteria 
 
 
-
 
Strop_2671  CDS  NC_009380  3005627  3006799  1173  acyl-CoA dehydrogenase type 2  YP_001159493  decreased coverage  0.00505359  normal  0.0674396  Salinispora tropica CNB-440  Bacteria 
 
 
-
 
Strop_2728  CDS  NC_009380  3074043  3074945  903  hypothetical protein  YP_001159550  decreased coverage  0.00309859  normal  0.614754  Salinispora tropica CNB-440  Bacteria 
 
 
-
 
Strop_2774  CDS  NC_009380  3144999  3146543  1545  AMP-dependent synthetase and ligase  YP_001159594  normal  0.149063  decreased coverage  0.000872135  Salinispora tropica CNB-440  Bacteria 
 
 
-
 
Strop_2775  CDS  NC_009380  3146609  3148246  1638  AMP-dependent synthetase and ligase  YP_001159595  normal  0.143385  decreased coverage  0.00095166  Salinispora tropica CNB-440  Bacteria 
 
 
-
 
Strop_2776  CDS  NC_009380  3148363  3148611  249  hypothetical protein  YP_001159596  normal  0.0180647  decreased coverage  0.000606651  Salinispora tropica CNB-440  Bacteria 
 
 
-
 
Strop_2777  CDS  NC_009380  3148774  3149694  921  proline-specific peptidase  YP_001159597  normal  0.159674  decreased coverage  0.000853285  Salinispora tropica CNB-440  Bacteria 
 
 
-
 
Strop_2778  CDS  NC_009380  3149691  3160826  11136  beta-ketoacyl synthase  YP_001159598  normal  decreased coverage  0.00772657  Salinispora tropica CNB-440  Bacteria 
 
 
-
 
Strop_2927  CDS  NC_009380  3347687  3348478  792  hypothetical protein  YP_001159743  decreased coverage  0.00365498  normal  Salinispora tropica CNB-440  Bacteria 
 
 
-
 
Strop_2940  CDS  NC_009380  3360731  3362140  1410  acyl-CoA synthetase  YP_001159756  decreased coverage  0.000118125  normal  Salinispora tropica CNB-440  Bacteria 
 
 
-
 
Strop_3083  CDS  NC_009380  3533590  3535020  1431  FeS assembly protein SufB  YP_001159898  decreased coverage  0.00853454  normal  0.21053  Salinispora tropica CNB-440  Bacteria 
 
 
-
 
Strop_3234  CDS  NC_009380  3706214  3708670  2457  transglutaminase domain-containing protein  YP_001160046  normal  decreased coverage  0.00597045  Salinispora tropica CNB-440  Bacteria 
 
 
-
 
Strop_3235  CDS  NC_009380  3708722  3709117  396  hypothetical protein  YP_001160047  normal  decreased coverage  0.00764978  Salinispora tropica CNB-440  Bacteria 
 
 
-
 
Strop_3236  CDS  NC_009380  3709232  3710491  1260  DNA-directed DNA polymerase  YP_001160048  normal  0.516429  decreased coverage  0.00986036  Salinispora tropica CNB-440  Bacteria 
 
 
-
 
Strop_3331  CDS  NC_009380  3822821  3823216  396  RDD domain-containing protein  YP_001160143  decreased coverage  0.00294231  normal  Salinispora tropica CNB-440  Bacteria 
 
 
-
 
Strop_3423  CDS  NC_009380  3927331  3928263  933  ABC transporter related  YP_001160232  decreased coverage  0.00331391  normal  0.124939  Salinispora tropica CNB-440  Bacteria 
 
 
-
 
Strop_3630  CDS  NC_009380  4158308  4159768  1461  F0F1 ATP synthase subunit beta  YP_001160439  decreased coverage  0.0018377  normal  Salinispora tropica CNB-440  Bacteria 
 
 
-
 
Strop_4172  CDS  NC_009380  4740172  4741644  1473  ABC transporter related  YP_001160979  decreased coverage  0.00812866  normal  Salinispora tropica CNB-440  Bacteria 
 
 
-
 
Strop_4328  CDS  NC_009380  4901819  4903843  2025  carbamoyl-phosphate synthase L chain, ATP-binding  YP_001161134  normal  decreased coverage  0.00647144  Salinispora tropica CNB-440  Bacteria 
 
 
-
 
Strop_4483  CDS  NC_009380  5073282  5074211  930  hypothetical protein  YP_001161289  normal  decreased coverage  0.00510838  Salinispora tropica CNB-440  Bacteria 
 
 
-
 
Strop_4484  CDS  NC_009380  5074218  5075366  1149  magnesium and cobalt transport protein CorA  YP_001161290  normal  decreased coverage  0.00540479  Salinispora tropica CNB-440  Bacteria 
 
 
-
 
Strop_4496  CDS  NC_009380  5086744  5087121  378  hypothetical protein  YP_001161302  decreased coverage  0.0019823  normal  0.109198  Salinispora tropica CNB-440  Bacteria 
 
 
-
 
Strop_4592  CDS  NC_009380  5182678  5183088  411  ribonuclease P protein component  YP_001161398  hitchhiker  0.000331999  decreased coverage  9.78361e-05  Salinispora tropica CNB-440  Bacteria 
 
 
-
 
Strop_4593  CDS  NC_009380  5183122  5183259  138  50S ribosomal protein L34  YP_001161399  hitchhiker  5.49229e-05  decreased coverage  8.48449e-05  Salinispora tropica CNB-440  Bacteria 
 
 
-
 
Strop_R0031  rRNA  NC_009380  2172798  2174325  1528  16S ribosomal RNA    decreased coverage  0.00134109  normal  0.111523  Salinispora tropica CNB-440  Bacteria 
 
 
-
 
Strop_R0042  rRNA  NC_009380  4009431  4012538  3108  23S ribosomal RNA    normal  0.448799  decreased coverage  0.00833876  Salinispora tropica CNB-440  Bacteria 
 
 
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