| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Strop_2775 |
|---|
| Symbol | |
|---|
| ID | 5059238 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salinispora tropica CNB-440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009380 |
|---|
| Strand | - |
|---|
| Start bp | 3146609 |
|---|
| End bp | 3148246 |
|---|
| Gene Length | 1638 bp |
|---|
| Protein Length | 545 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 640475029 |
|---|
| Product | AMP-dependent synthetase and ligase |
|---|
| Protein accession | YP_001159595 |
|---|
| Protein GI | 145595298 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II |
|---|
| TIGRFAM ID | [TIGR01733] amino acid adenylation domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.143385 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 5 |
|---|
| Fosmid unclonability p-value | 0.00095166 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGTGGGTGG GACGCGCTTA TGGTCGCCGA TACGCTCCGG CCATGAGTCG AGAGATTTTC
GCGCGCACGC ACGCCTCCGT GGAGACGCTG CACGAGTTCC TGTTGGCGGG CGCCCGGTTG
ACGCCTGACA AACCGGCCGT CATCCAGGCC GTCGGCGGCG AGACGGGCTC CCTGTCGTAC
CGTCAGCTCG CCCAGCGGGT CGACGGCTAC GCCGCCACCC TCGACGAGTT GGGACTGGAC
ATAGGCGACC GGGTAGTCCT GGAGTCGGAC ACCTCCGCAA CCGCCATCGC CACCTTCCTG
GCCTGCTCCT CGCTGGGGCT CACCGTCGTC CCGGTCAGCC CGGAGACACC GGCGCAGCGC
CTCGCGCTGA TCGCCGAGAG CACCGAGGCG GCGCTGCACC TGCAGACCGT CGACGGACGC
CGGGAGGCGG TGCCCACGCC GCTGGGCACC GGCCGCTTCG GCACCGACGG CATCCAGGTC
GAGCGGGCTC CAGCACCCCG ATCCCGGCAC CGCCGGGAGC TGGTCCCCAC CGATCCCGCC
TACATGATCT TCACGTCCGG CACCACCGGC CGGCCCAAGG GCGTGGTGAT GAGCCACCGG
GGCGTACTCG CCTTCTTCCG GGGCATGCTC CGGCACGGCA TCGTCTCCGC CGAGGACCGG
GTCGCCACCA CCTCCCCCCT TCAGTTCGAC TTCTCCCTGC TCGACATCGG CCTGGCCCTG
GGCAGCGGCG CGGCCGTCGT GCCGGTGCCC CGGTCGCTGC TGCGCTGGCC GCGCCGCTTC
GTGCAGTTCC TCACCGACTC GGGAACCACC CAGGTCAACG GCGTCCCGTC GATCTGGCGG
GGCGTGCTGC GGCACGAGCA GGCCGGGCTG GCCGCGCTCG GCGAACAGAT CCGCGGTGTG
CTCTACTCCG GCGAGAACTT CCCGCTGCCC GAACTGCGCC AACTGCAACG GGCCCTGCCC
CGAGCCCGGG TGGTCAACTG CTTCGGCAGC AGCGAGTCCA TCGCCGCCTC CTTCACCGAC
GTGCCGAACC CGTTGCCCGA GGACGCGGAC CGGATCTCCA TTGGCCACGC CCACCCCGGT
GCGGAGATGC TGCTGATCGA CGAGGACGGC CGGCCGGTCG ACGAGCCGGG TGTGGTCGGC
CAGATCCACC TGCGCAGCGC CGCCCTGTTC AACGGCTACT GGAACGACCC GCAGGCGACC
GCCGCCGCGC TGGTGCCCGA CCCGCTCAAC CCGGCCGCCG GGCAGGTGGT CTTCCGCACC
GGCGACCTGG CCTACCGGGG GGAGGGCGGC GAGCTGTACT TCACCGGCCG GGCTGACTCG
CTGGTCAAGG TACGGGGCAA CCGGGTCGAA CTGGGCGAGG TGGAGCGCCG GGTCCGGGAG
TTCCCGGGCA TCGCCGGTGC CGCCGCGCTG ATGCTGTCCC AGGCGGGCAA GGATCCGGTG
CTGGCCACCT TCGTGGTGCT CGACGCGGGT GTCGACGGCG TTGAGGAGAT GGAGCTCGGC
GCGTTCTGCC TGGAGGCGTT GCCCGACTAC ATGGTGCCGC AGCAGGTGCG GGTTCTCGAC
GAGCTGCCGG TCAACGCCAA CGGCAAGATC GACCGGCGGG CCCTTGCCCG CCGCGCCGGA
GAGCCCGCGC AGGGCTGA
|
|---|
| Protein sequence | MWVGRAYGRR YAPAMSREIF ARTHASVETL HEFLLAGARL TPDKPAVIQA VGGETGSLSY
RQLAQRVDGY AATLDELGLD IGDRVVLESD TSATAIATFL ACSSLGLTVV PVSPETPAQR
LALIAESTEA ALHLQTVDGR REAVPTPLGT GRFGTDGIQV ERAPAPRSRH RRELVPTDPA
YMIFTSGTTG RPKGVVMSHR GVLAFFRGML RHGIVSAEDR VATTSPLQFD FSLLDIGLAL
GSGAAVVPVP RSLLRWPRRF VQFLTDSGTT QVNGVPSIWR GVLRHEQAGL AALGEQIRGV
LYSGENFPLP ELRQLQRALP RARVVNCFGS SESIAASFTD VPNPLPEDAD RISIGHAHPG
AEMLLIDEDG RPVDEPGVVG QIHLRSAALF NGYWNDPQAT AAALVPDPLN PAAGQVVFRT
GDLAYRGEGG ELYFTGRADS LVKVRGNRVE LGEVERRVRE FPGIAGAAAL MLSQAGKDPV
LATFVVLDAG VDGVEEMELG AFCLEALPDY MVPQQVRVLD ELPVNANGKI DRRALARRAG
EPAQG
|
|---|
| |