Gene Strop_2330 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagStrop_2330 
Symbol 
ID5058793 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalinispora tropica CNB-440 
KingdomBacteria 
Replicon accessionNC_009380 
Strand
Start bp2623369 
End bp2623980 
Gene Length612 bp 
Protein Length203 aa 
Translation table11 
GC content65% 
IMG OID640474590 
Producthelix-turn-helix domain-containing protein 
Protein accessionYP_001159156 
Protein GI145594859 
COG category[K] Transcription 
COG ID[COG1396] Predicted transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones29 
Plasmid unclonability p-value0.699676 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.000887341 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
GTGACACTCC TCAACGTCTC ACTACGTTCG CTCTACTGGA ACGAACGTAA CACTAAAGTG 
GTACACATGG ATCTGGCGCG TACGGTCGGC TCGAATGTTC ACCGGTTGCG AAACACCGCT
GGCATGTCCC TGGCGGACCT GGCCACAGCC GGCGACATCA GCAAGACCAC CCTGCACGGC
ATCGAGCAGG GGCATGGCAA CCCGACCCTC AGCACCCTGT GGGCCCTGGC CACGGCACTG
CGGGTGCCGC TCGGTGAACT ACTGGAGACG CCCACCCCCC GCACCGACGT CGTACGCGCC
GATGACCAAC GACCACGCAT CAGTGGGGAC GCGGTCAGCG CCCGCCTGCT CCACCGCATC
CGACTACACG GCACCGTGGA GGTCTACGAC ATCGACGTGG CCCAGACCAC CCAGCACTCA
ACCGCCCACC TACCCGGCGT GCAGGAGTGC CTCATCCTCA CCCATGGAAG CATCACCACC
GGCCCCACCG ACGCCGCCGT CACCCTGACC GCACACGACT CCATTCGGTT CGACGCCAAC
CACCGGCACC AGTACCAGGG ACATGGCCAG CACAACCGAG CAGTTCTCAT CATGCTGCAC
CCCGACACGT GA
 
Protein sequence
MTLLNVSLRS LYWNERNTKV VHMDLARTVG SNVHRLRNTA GMSLADLATA GDISKTTLHG 
IEQGHGNPTL STLWALATAL RVPLGELLET PTPRTDVVRA DDQRPRISGD AVSARLLHRI
RLHGTVEVYD IDVAQTTQHS TAHLPGVQEC LILTHGSITT GPTDAAVTLT AHDSIRFDAN
HRHQYQGHGQ HNRAVLIMLH PDT