Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Strop_3423 |
Symbol | |
ID | 5059892 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salinispora tropica CNB-440 |
Kingdom | Bacteria |
Replicon accession | NC_009380 |
Strand | - |
Start bp | 3927331 |
End bp | 3928263 |
Gene Length | 933 bp |
Protein Length | 310 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 640475672 |
Product | ABC transporter related |
Protein accession | YP_001160232 |
Protein GI | 145595935 |
COG category | [V] Defense mechanisms |
COG ID | [COG1131] ABC-type multidrug transport system, ATPase component |
TIGRFAM ID | [TIGR01288] ATP-binding ABC transporter family nodulation protein NodI |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.00331391 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.124939 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGACCACGG CTCAACCACT CATCCAGGCG CGGGGGCTGG TGAAGCGGTT CGGCGGCTTC ACCGCGGTCG ACGCCATCGA CGTTGCGGTT CCGGCTGGGG AGGCGTTCGG TTTCCTCGGG CCCAACGGCG CCGGGAAGTC GTCCACCATG CGCATGATCG GTTGTGTCTC GCCGCCCAGC GAAGGGGAGC TGCGCATCCT CGGCATGGAT CCGGTGCGAG ACGGGCCGGC GATCCGGGCC CGCCTCGGTG TCTGCCCCCA GCTCGACACG CTCGACCCGG AGCTGACCGT CCGGGAAAAT CTGATCACCT ACGCCCGCTA CTTCGGTATC GCCCGCCGGG TGGCTCGGCT GCGCGCCACC GAGCTGCTCG ATTTCGTGCA GCTCAGCGAG CGGGCCGACA GTAAGGTGGA GCCGCTCTCC GGCGGCATGA AGCGACGGCT CACCATCGCC CGCGCGCTCG TCAACGAGCC CGAGATCGTG CTGCTGGACG AGCCGACCAC CGGTCTCGAC CCACAGGCCC GGCACCTGGT CTGGGAGCGG CTGTTCCAGC TCAAGCAGCA GGGCGTCACG CTGGTGCTCA CCACGCACTA CATGGACGAG GCCGAGCAGC TCTGCGACCG TCTGGTGGTG ATGGACGGTG GACGGATCGT CGCCGAAGGC TCCCCCCGCG TGCTGATCGA GCAGCACTCC ACCCGCGAGG TGGTCGAGCT GCGCTTCGCG GGCGAGTCGC AGGAGCCGTT CGCCAGCAAG CTTGACCAGC TCGGGGAACG GGTCGAGGTG CTGCCCGACC GGATCCTGCT CTACGTACCC GACGGCGACT CGGCGGTGGC CGAGGTGACC GCGCTCGGCC TGCACCCGAT CAACGTGTTG GTGCGACGCA GCGGCCTGGA GGATGTCTTT CTGCACCTCA CCGGCCGCAC TTTGATCGAC TGA
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Protein sequence | MTTAQPLIQA RGLVKRFGGF TAVDAIDVAV PAGEAFGFLG PNGAGKSSTM RMIGCVSPPS EGELRILGMD PVRDGPAIRA RLGVCPQLDT LDPELTVREN LITYARYFGI ARRVARLRAT ELLDFVQLSE RADSKVEPLS GGMKRRLTIA RALVNEPEIV LLDEPTTGLD PQARHLVWER LFQLKQQGVT LVLTTHYMDE AEQLCDRLVV MDGGRIVAEG SPRVLIEQHS TREVVELRFA GESQEPFASK LDQLGERVEV LPDRILLYVP DGDSAVAEVT ALGLHPINVL VRRSGLEDVF LHLTGRTLID
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