| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Strop_1510 |
|---|
| Symbol | |
|---|
| ID | 5057963 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salinispora tropica CNB-440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009380 |
|---|
| Strand | - |
|---|
| Start bp | 1721007 |
|---|
| End bp | 1723115 |
|---|
| Gene Length | 2109 bp |
|---|
| Protein Length | 702 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 640473778 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001158354 |
|---|
| Protein GI | 145594057 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.00655438 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGGCTGACC GGCCAGGAAT GCTCGATTCG GTCAGGCTGG CGGCCAGGAA AGCGCCGATC
TTTCAGCTCT ACCGACGCCG GGACCGCCTC CGCGCGACCC TGTGCAGGGT CAACGTGGCC
CTCGGCCAGG CGGATCCGCA AGACCCACTC ACCCGTCGCC GCGTTCGCGA GCTCGACACC
GCCGCGGTCC TGCTCGGCCA GGCCAGGTGG CACGCCGAAC GCGCTCGGGC GACCGGCGAC
ACCACCGCGC TGAAGCGCGC ACGGCAGGCG TTCACCGAGG GACAACGCCT CGCGGACCGC
ATCGAGGCAC TGGTCGCCGG TGGCAACGGT GCGTACGCGA CAGACCGCTT CCCCATCCTG
GAGCGGGCGG GCACCGAGAT CGATCACTGC CAGGGGGTTC CCCTGGTCCC CGCCATCACG
CCGGTGGTCG TCCTGCGGGG CAGCGACGAG GAGATGGGCG CGCAGTACGC CCGGCAGATC
GCGGCCATTT TCGGTCGCTG GATTCTCCGG TACGGCGTGC GCCGGCTCAC CGCCGACGAG
CGTGTTGAGG TCGGCCGGTG GGAGGCTGTC CACGGCGAAC ACCTGCCCTG GTTGGGCCGA
TTCGTCGACG GGTGGGTGGC CGGCGCGCGC GAGTCAGGAG TCAACCTGGA CCGAGCGTCG
ATCATGGATC TGTGGGTGGG GCACCGACCA CCGGCCACAA GCTGGCTCGA CGCCTCCTCC
GGGCTACCCG AACTACCCCC GATCGCCTGC ACGTCCCTCG CAGCCTGGGG GGAGTCCACG
CCGGACGGCG CCTTGGTCGC CGCCGCCACG GGCGATCACG AACTCTCGTA CCAGGTAACC
GTGGCAGCCT TCCCCGACGA CGGCCATCCA TTCGTGCACA CCATCTTCAG CGCGGCCGGC
ACACTACCGA CCGTCGGTCC CAACTGGTTC TTCGGCCACC CCGGCATGAG TCGATCCGGG
CTGGCCTACG TCCACCACGG CGGCGGGCCG AAGTTCCTCG AGCCGCGGCA CTCCTGGGGA
TACGGCCTGC GACGCACGCC ATCGGTCTGG CACCTCCTCC GCTACGCCAC GTCCGCCCAC
GACGCCCGCG AGATGGAACA GAGCTGGCCG ATCGGTGACG TCGGACGTGG TGACCAGGCG
ACAGTGGGCG GCTTCTACGC CGACGCCGAC TACGCGTACA TCATCGAAGG GCGCGACGAT
CCCGTCGCTG TCCGTGAAGC GGGCCTGCTC GGTGAACGCG ACTTCCTGTA TGCCAACAAC
AGTGCCATGC ACCCCGACGC GGTCCGCAGC GAATGGATGC GGCGGGCCCC CGACGGGAGC
TGGCTCTGGG ACCGGGAGGG CGGCTACCGG CCAGCCACAC CGCGTGGGAT GACCAAGTCA
CCCGGCATGC TGCTCAAATG GCTCAGTGGA CGCATGAGCA CCGACGAGCT CCTCGTCGCC
GGCATGCAGT TCGCCTACTG GAACAGCTAC CACCGCAACG TGTTCCTACG GCGGATGGCC
GACGCCCACC ACGGCCATCT CGACGTTGGG GCCCTGCGGG CCATATACCG AACCGTGGGT
ACCGCGCCGA CCGGATCCTG GGCGGCGGCC GTCCGCCGCT ACCGGCGTAC CGGCGAGTGG
AGTCGCATCT CCGCGGCGCA TGCGTCCAAC GCGTTTGTCG CCATCATGAA ACCGTCAACC
GGGTACTACT CGCTGTGTAC CGGACCCGCC CGCAGGGGTG CCGCGCCGAT GTCCCCCGAC
TCGGCGATGA TCGTTCGCGG AGAGACCAAC GCCTTCTGGG ACCTCGAACT CCCCGACACA
CCAACCGCCC TCGTCGAGCG CGCCGAAGCG CTGGCGGACC GACTACTTGG CCATGCACGC
GACACCGTGG CGGGAGCCAC GCACGCCGGA GAGACGGCGT CTGACGTTGC GGAATGGCTC
GCCGCCGCCC AGACGGACAC CTCATCGCCG CGGGACGCCG ACGGCATCGA GGCCCTGGGC
CGTCGGGTCC GCGCGGCGAC CAGAGCCCAG GTCCGGGCCC GGCAGATCCT GCACCTGGGT
GACCCGCCAC CCGAGTTCAC ACTTCCCGAG AGACGGAAGC CGCCCCGGCC GTCGGTTGGC
ACTCCATAG
|
|---|
| Protein sequence | MADRPGMLDS VRLAARKAPI FQLYRRRDRL RATLCRVNVA LGQADPQDPL TRRRVRELDT
AAVLLGQARW HAERARATGD TTALKRARQA FTEGQRLADR IEALVAGGNG AYATDRFPIL
ERAGTEIDHC QGVPLVPAIT PVVVLRGSDE EMGAQYARQI AAIFGRWILR YGVRRLTADE
RVEVGRWEAV HGEHLPWLGR FVDGWVAGAR ESGVNLDRAS IMDLWVGHRP PATSWLDASS
GLPELPPIAC TSLAAWGEST PDGALVAAAT GDHELSYQVT VAAFPDDGHP FVHTIFSAAG
TLPTVGPNWF FGHPGMSRSG LAYVHHGGGP KFLEPRHSWG YGLRRTPSVW HLLRYATSAH
DAREMEQSWP IGDVGRGDQA TVGGFYADAD YAYIIEGRDD PVAVREAGLL GERDFLYANN
SAMHPDAVRS EWMRRAPDGS WLWDREGGYR PATPRGMTKS PGMLLKWLSG RMSTDELLVA
GMQFAYWNSY HRNVFLRRMA DAHHGHLDVG ALRAIYRTVG TAPTGSWAAA VRRYRRTGEW
SRISAAHASN AFVAIMKPST GYYSLCTGPA RRGAAPMSPD SAMIVRGETN AFWDLELPDT
PTALVERAEA LADRLLGHAR DTVAGATHAG ETASDVAEWL AAAQTDTSSP RDADGIEALG
RRVRAATRAQ VRARQILHLG DPPPEFTLPE RRKPPRPSVG TP
|
|---|
| |