More than 300 homologs were found in PanDaTox collection
for query gene Vapar_0103 on replicon NC_012791
Organism: Variovorax paradoxus S110



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_012791  Vapar_0103  binding-protein-dependent transport systems inner membrane component  100 
 
 
256 aa  480  1e-134  Variovorax paradoxus S110  Bacteria  normal  0.631102  n/a   
 
 
-
 
NC_008786  Veis_0385  binding-protein-dependent transport systems inner membrane component  90.2 
 
 
259 aa  389  1e-107  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.925  normal  0.323719 
 
 
-
 
NC_009485  BBta_5984  putative ABC transporter (permease protein)  54.13 
 
 
255 aa  204  1e-51  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.27636 
 
 
-
 
NC_008254  Meso_3540  binding-protein-dependent transport systems inner membrane component  39.44 
 
 
258 aa  142  4e-33  Chelativorans sp. BNC1  Bacteria  normal  0.853389  n/a   
 
 
-
 
NC_013131  Caci_4306  binding-protein-dependent transport systems inner membrane component  32.59 
 
 
278 aa  107  2e-22  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.0649738  hitchhiker  0.00238236 
 
 
-
 
NC_009708  YpsIP31758_0355  putative ABC aliphatic sulfonates transporter, permease subunit  29.2 
 
 
264 aa  106  3e-22  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_010465  YPK_0423  binding-protein-dependent transport systems inner membrane component  29.2 
 
 
264 aa  106  3e-22  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_5985  putative ABC transporter (permease protein)  37.13 
 
 
255 aa  106  4e-22  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.209656 
 
 
-
 
NC_008146  Mmcs_5349  binding-protein-dependent transport systems inner membrane component  35.65 
 
 
271 aa  104  1e-21  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_009832  Spro_1736  binding-protein-dependent transport systems inner membrane component  29.55 
 
 
264 aa  104  1e-21  Serratia proteamaculans 568  Bacteria  normal  0.440066  normal  0.144233 
 
 
-
 
NC_008705  Mkms_5438  binding-protein-dependent transport systems inner membrane component  35.65 
 
 
271 aa  104  1e-21  Mycobacterium sp. KMS  Bacteria  normal  normal  0.586381 
 
 
-
 
NC_009077  Mjls_5728  binding-protein-dependent transport systems inner membrane component  35.65 
 
 
271 aa  104  1e-21  Mycobacterium sp. JLS  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_5130  binding-protein-dependent transport systems inner membrane component  33.97 
 
 
272 aa  103  4e-21  Methylobacterium sp. 4-46  Bacteria  normal  0.612608  normal  0.0470724 
 
 
-
 
NC_009436  Ent638_1453  alkanesulfonate transporter permease subunit  31.75 
 
 
263 aa  102  5e-21  Enterobacter sp. 638  Bacteria  normal  normal 
 
 
-
 
NC_008254  Meso_3539  binding-protein-dependent transport systems inner membrane component  29.74 
 
 
253 aa  102  5e-21  Chelativorans sp. BNC1  Bacteria  normal  0.158821  n/a   
 
 
-
 
NC_012791  Vapar_0102  binding-protein-dependent transport systems inner membrane component  33.33 
 
 
263 aa  102  5e-21  Variovorax paradoxus S110  Bacteria  normal  0.922239  n/a   
 
 
-
 
NC_009674  Bcer98_1998  binding-protein-dependent transport systems inner membrane component  32.63 
 
 
283 aa  101  1e-20  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  0.894639  n/a   
 
 
-
 
NC_013595  Sros_1812  ABC transporter, permease protein  31.35 
 
 
257 aa  101  1e-20  Streptosporangium roseum DSM 43021  Bacteria  normal  0.554956  normal  0.627316 
 
 
-
 
NC_013093  Amir_5422  binding-protein-dependent transport systems inner membrane component  31.79 
 
 
269 aa  100  2e-20  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_008786  Veis_0386  binding-protein-dependent transport systems inner membrane component  34.95 
 
 
266 aa  100  2e-20  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal  0.314921 
 
 
-
 
NC_013595  Sros_1818  ABC transporter, permease protein  28.34 
 
 
263 aa  99.8  4e-20  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.493092 
 
 
-
 
NC_011666  Msil_0772  binding-protein-dependent transport systems inner membrane component  29.9 
 
 
302 aa  99.8  4e-20  Methylocella silvestris BL2  Bacteria  n/a    normal  0.0528102 
 
 
-
 
NC_007953  Bxe_C0981  nitrate/sulfonate/bicarbonate ABC transporter inner membrane protein  31.28 
 
 
279 aa  99  7e-20  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_1338  binding-protein-dependent transport systems inner membrane component  34.3 
 
 
260 aa  98.6  8e-20  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.011116 
 
 
-
 
NC_005945  BAS2712  sulfonate ABC transporter permease  33.16 
 
 
282 aa  98.6  9e-20  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_2920  sulfonate ABC transporter permease protein  33.16 
 
 
282 aa  98.6  9e-20  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_19570  ABC transporter permease  30.37 
 
 
262 aa  98.6  9e-20  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_007952  Bxe_B2638  ABC sulfonate transporter, inner membrane subunit  28.16 
 
 
279 aa  98.2  1e-19  Burkholderia xenovorans LB400  Bacteria  normal  0.0950643  hitchhiker  0.0000361652 
 
 
-
 
NC_013159  Svir_34320  ABC-type nitrate/sulfonate/bicarbonate transport system, permease component  32 
 
 
273 aa  98.2  1e-19  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal 
 
 
-
 
NC_009428  Rsph17025_0765  binding-protein-dependent transport systems inner membrane component  30.39 
 
 
265 aa  98.6  1e-19  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_007492  Pfl01_5412  binding-protein dependent transport system inner membrane protein  27.83 
 
 
260 aa  97.4  2e-19  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.210037  hitchhiker  0.00191971 
 
 
-
 
NC_012880  Dd703_1642  binding-protein-dependent transport systems inner membrane component  32.11 
 
 
263 aa  97.4  2e-19  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_010322  PputGB1_0263  binding-protein-dependent transport systems inner membrane component  29.3 
 
 
265 aa  96.7  3e-19  Pseudomonas putida GB-1  Bacteria  normal  0.791848  normal 
 
 
-
 
NC_012791  Vapar_1911  binding-protein-dependent transport systems inner membrane component  28.75 
 
 
282 aa  96.7  3e-19  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_012912  Dd1591_1673  binding-protein-dependent transport systems inner membrane component  32.11 
 
 
263 aa  96.3  4e-19  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_009656  PSPA7_1684  ABC transporter permease  30.45 
 
 
262 aa  96.3  4e-19  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_010501  PputW619_4973  binding-protein-dependent transport systems inner membrane component  29.3 
 
 
265 aa  95.9  5e-19  Pseudomonas putida W619  Bacteria  normal  0.0722896  normal  0.022026 
 
 
-
 
NC_012791  Vapar_1899  binding-protein-dependent transport systems inner membrane component  32.81 
 
 
275 aa  95.5  6e-19  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_1369  ABC transporter membrane protein  30.14 
 
 
272 aa  95.5  8e-19  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.0458182 
 
 
-
 
NC_002947  PP_0239  binding-protein-dependent transport systems inner membrane component  28.84 
 
 
265 aa  95.1  9e-19  Pseudomonas putida KT2440  Bacteria  normal  hitchhiker  0.00756787 
 
 
-
 
NC_009512  Pput_0254  binding-protein-dependent transport systems inner membrane component  28.84 
 
 
265 aa  95.1  9e-19  Pseudomonas putida F1  Bacteria  normal  0.293544  normal  0.0445843 
 
 
-
 
NC_007005  Psyr_3598  binding-protein dependent transport system inner membrane protein  30.62 
 
 
285 aa  94.7  1e-18  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal  0.330128 
 
 
-
 
NC_010172  Mext_0332  binding-protein-dependent transport systems inner membrane component  33.92 
 
 
279 aa  94.7  1e-18  Methylobacterium extorquens PA1  Bacteria  normal  0.692278  normal 
 
 
-
 
NC_013739  Cwoe_3818  binding-protein-dependent transport systems inner membrane component  29.95 
 
 
280 aa  94.7  1e-18  Conexibacter woesei DSM 14684  Bacteria  normal  0.615395  normal  0.42897 
 
 
-
 
NC_011004  Rpal_4641  binding-protein-dependent transport systems inner membrane component  30.99 
 
 
277 aa  95.1  1e-18  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.750363  n/a   
 
 
-
 
NC_013595  Sros_1813  ABC transporter membrane protein  31.79 
 
 
256 aa  94  2e-18  Streptosporangium roseum DSM 43021  Bacteria  normal  0.48548  normal  0.635137 
 
 
-
 
NC_007413  Ava_4139  binding-protein dependent transport system inner membrane protein  30.73 
 
 
275 aa  94  2e-18  Anabaena variabilis ATCC 29413  Bacteria  decreased coverage  0.00000000314222  normal  0.0106036 
 
 
-
 
NC_010581  Bind_0552  binding-protein-dependent transport systems inner membrane component  29.91 
 
 
286 aa  94  2e-18  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.973794  normal 
 
 
-
 
NC_008688  Pden_5005  binding-protein-dependent transport systems inner membrane component  30.71 
 
 
289 aa  94.4  2e-18  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_0397  binding-protein-dependent transport systems inner membrane component  35.93 
 
 
285 aa  94  2e-18  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.987071 
 
 
-
 
NC_013205  Aaci_2846  binding-protein-dependent transport systems inner membrane component  30.45 
 
 
260 aa  93.2  3e-18  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  hitchhiker  0.000143494  n/a   
 
 
-
 
NC_008599  CFF8240_0620  taurine transport system permease protein TauC  29.73 
 
 
245 aa  93.2  3e-18  Campylobacter fetus subsp. fetus 82-40  Bacteria  hitchhiker  0.00071484  n/a   
 
 
-
 
NC_011830  Dhaf_3643  binding-protein-dependent transport systems inner membrane component  26.8 
 
 
252 aa  93.6  3e-18  Desulfitobacterium hafniense DCB-2  Bacteria  hitchhiker  0.000000000799696  n/a   
 
 
-
 
NC_012917  PC1_0024  binding-protein-dependent transport systems inner membrane component  29.3 
 
 
264 aa  92.8  4e-18  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_010338  Caul_2657  binding-protein-dependent transport systems inner membrane component  32.35 
 
 
269 aa  93.2  4e-18  Caulobacter sp. K31  Bacteria  normal  normal  0.363458 
 
 
-
 
NC_008541  Arth_3082  binding-protein-dependent transport systems inner membrane component  31.94 
 
 
280 aa  92.8  4e-18  Arthrobacter sp. FB24  Bacteria  normal  0.0593827  n/a   
 
 
-
 
NC_007644  Moth_1974  binding-protein dependent transport system inner membrane protein  30.81 
 
 
261 aa  92.8  5e-18  Moorella thermoacetica ATCC 39073  Bacteria  hitchhiker  0.000000226251  normal 
 
 
-
 
NC_014150  Bmur_1575  binding-protein-dependent transport systems inner membrane component  25.12 
 
 
266 aa  92.8  5e-18  Brachyspira murdochii DSM 12563  Bacteria  normal  n/a   
 
 
-
 
NC_007492  Pfl01_3295  binding-protein dependent transport system inner membrane protein  29.71 
 
 
279 aa  92.4  6e-18  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_007947  Mfla_1556  binding-protein-dependent transport systems inner membrane component  29.84 
 
 
260 aa  92.4  6e-18  Methylobacillus flagellatus KT  Bacteria  hitchhiker  0.00657173  hitchhiker  0.00236959 
 
 
-
 
NC_011988  Avi_5468  ABC transporter membrane spanning protein (aliphatic sulphonate)  32.35 
 
 
284 aa  92  7e-18  Agrobacterium vitis S4  Bacteria  normal  0.165676  n/a   
 
 
-
 
NC_011832  Mpal_1145  binding-protein-dependent transport systems inner membrane component  27.8 
 
 
279 aa  92.4  7e-18  Methanosphaerula palustris E1-9c  Archaea  normal  0.208956  normal 
 
 
-
 
NC_009715  CCV52592_1129  taurine transport system permease protein TauC  29.36 
 
 
241 aa  92  8e-18  Campylobacter curvus 525.92  Bacteria  normal  0.774255  n/a   
 
 
-
 
NC_007520  Tcr_0034  binding-protein dependent transport system inner membrane protein  29.35 
 
 
276 aa  91.3  1e-17  Thiomicrospira crunogena XCL-2  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_5516  binding-protein-dependent transport systems inner membrane component  33.49 
 
 
262 aa  91.7  1e-17  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_011004  Rpal_2882  binding-protein-dependent transport systems inner membrane component  28.99 
 
 
268 aa  90.5  2e-17  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.80309  n/a   
 
 
-
 
NC_009675  Anae109_3869  binding-protein-dependent transport systems inner membrane component  29.31 
 
 
274 aa  90.5  2e-17  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal 
 
 
-
 
NC_007298  Daro_2152  binding-protein dependent transport system inner membrane protein  27.62 
 
 
271 aa  90.9  2e-17  Dechloromonas aromatica RCB  Bacteria  normal  normal  0.529987 
 
 
-
 
NC_009428  Rsph17025_0778  binding-protein-dependent transport systems inner membrane component  32.18 
 
 
270 aa  90.5  2e-17  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_009439  Pmen_4330  binding-protein-dependent transport systems inner membrane component  30.33 
 
 
276 aa  90.9  2e-17  Pseudomonas mendocina ymp  Bacteria  normal  normal  0.936191 
 
 
-
 
NC_013421  Pecwa_0030  binding-protein-dependent transport systems inner membrane component  28.99 
 
 
264 aa  90.9  2e-17  Pectobacterium wasabiae WPP163  Bacteria  normal  0.050552  n/a   
 
 
-
 
NC_010725  Mpop_0411  binding-protein-dependent transport systems inner membrane component  33.33 
 
 
279 aa  91.3  2e-17  Methylobacterium populi BJ001  Bacteria  normal  0.760866  normal 
 
 
-
 
NC_003909  BCE_2959  sulfonate ABC transporter, permease protein, putative  33.16 
 
 
284 aa  90.1  3e-17  Bacillus cereus ATCC 10987  Bacteria  normal  0.132224  n/a   
 
 
-
 
NC_009720  Xaut_4051  binding-protein-dependent transport systems inner membrane component  27.39 
 
 
273 aa  90.5  3e-17  Xanthobacter autotrophicus Py2  Bacteria  normal  normal  0.395379 
 
 
-
 
NC_009485  BBta_6545  ABC transporter permease  32 
 
 
269 aa  90.5  3e-17  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.276106 
 
 
-
 
NC_011757  Mchl_3715  binding-protein-dependent transport systems inner membrane component  30.29 
 
 
282 aa  90.1  3e-17  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.0101223 
 
 
-
 
NC_009253  Dred_1575  binding-protein-dependent transport systems inner membrane component  24.89 
 
 
254 aa  90.5  3e-17  Desulfotomaculum reducens MI-1  Bacteria  normal  0.0747147  n/a   
 
 
-
 
NC_013093  Amir_5423  binding-protein-dependent transport systems inner membrane component  31.82 
 
 
298 aa  89.7  4e-17  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_2919  putative sulfonate ABC transporter, permease protein  33.16 
 
 
282 aa  89.7  4e-17  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  2.35916e-18 
 
 
-
 
NC_011887  Mnod_7932  binding-protein-dependent transport systems inner membrane component  28.86 
 
 
283 aa  89.7  4e-17  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_013510  Tcur_0464  binding-protein-dependent transport systems inner membrane component  33.93 
 
 
273 aa  89.7  4e-17  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_010172  Mext_3406  binding-protein-dependent transport systems inner membrane component  30.29 
 
 
286 aa  89.7  4e-17  Methylobacterium extorquens PA1  Bacteria  normal  0.316546  normal 
 
 
-
 
NC_006274  BCZK2640  alkanesulfonates transport system permease; sulfonate ABC transporter, permease  33.16 
 
 
282 aa  89.4  5e-17  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_013889  TK90_0966  binding-protein-dependent transport systems inner membrane component  27.95 
 
 
279 aa  89.7  5e-17  Thioalkalivibrio sp. K90mix  Bacteria  normal  normal  0.136509 
 
 
-
 
NC_005957  BT9727_2663  alkanesulfonates transport system permease; sulfonate ABC transporter, permease  33.16 
 
 
282 aa  89  6e-17  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_009802  CCC13826_0233  ABC transporter, permease protein  28.38 
 
 
241 aa  89  7e-17  Campylobacter concisus 13826  Bacteria  normal  n/a   
 
 
-
 
NC_004578  PSPTO_1796  sulfonate ABC transporter, permease protein, putative  29.19 
 
 
285 aa  89  7e-17  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_3299  putative sulfonate ABC transporter, permease protein  30.39 
 
 
286 aa  89  7e-17  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.201269  normal  0.262094 
 
 
-
 
NC_009921  Franean1_4522  binding-protein-dependent transport systems inner membrane component  31.31 
 
 
329 aa  89  7e-17  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_012793  GWCH70_2621  binding-protein-dependent transport systems inner membrane component  24.3 
 
 
281 aa  88.2  1e-16  Geobacillus sp. WCH70  Bacteria  hitchhiker  0.00000218671  n/a   
 
 
-
 
NC_009720  Xaut_3464  binding-protein-dependent transport systems inner membrane component  30.88 
 
 
294 aa  87.8  1e-16  Xanthobacter autotrophicus Py2  Bacteria  normal  0.136656  normal 
 
 
-
 
NC_007492  Pfl01_0210  binding-protein dependent transport system inner membrane protein  31.56 
 
 
532 aa  88.2  1e-16  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_4568  binding-protein-dependent transport systems inner membrane component  37.14 
 
 
286 aa  87.8  1e-16  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_011981  Avi_7197  ABC transporter membrane spanning protein (aliphatic sulphonate)  30.46 
 
 
272 aa  88.2  1e-16  Agrobacterium vitis S4  Bacteria  normal  0.0116141  n/a   
 
 
-
 
NC_008726  Mvan_3413  binding-protein-dependent transport systems inner membrane component  32.42 
 
 
271 aa  88.2  1e-16  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.0409101  normal  0.884011 
 
 
-
 
NC_013093  Amir_4887  binding-protein-dependent transport systems inner membrane component  29.79 
 
 
267 aa  87.4  2e-16  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_012560  Avin_21600  aliphatic sulfonates ABC transporter, inner membrane component  28.71 
 
 
284 aa  87.8  2e-16  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_3457  binding-protein-dependent transport systems inner membrane component  32.29 
 
 
251 aa  87.4  2e-16  Methylobacterium sp. 4-46  Bacteria  normal  0.693916  hitchhiker  0.00170631 
 
 
-
 
NC_011757  Mchl_1261  binding-protein-dependent transport systems inner membrane component  35.97 
 
 
293 aa  87  3e-16  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.113651  normal 
 
 
-
 
NC_011004  Rpal_1572  binding-protein-dependent transport systems inner membrane component  34.84 
 
 
538 aa  86.7  3e-16  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
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