More than 300 homologs were found in PanDaTox collection
for query gene RS04789 on replicon NC_003296
Organism: Ralstonia solanacearum GMI1000



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_003296  RS04789  putative transcription regulator protein  100 
 
 
232 aa  457  9.999999999999999e-129  Ralstonia solanacearum GMI1000  Bacteria  normal  0.814651  normal  0.0984639 
 
 
-
 
NC_012857  Rpic12D_4118  transcriptional regulator, LuxR family  56.13 
 
 
213 aa  206  2e-52  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_010678  Rpic_4005  transcriptional regulator, LuxR family  56.13 
 
 
213 aa  206  2e-52  Ralstonia pickettii 12J  Bacteria  normal  0.469867  normal 
 
 
-
 
NC_011666  Msil_3539  transcriptional regulator, LuxR family  37.19 
 
 
229 aa  62.4  0.000000007  Methylocella silvestris BL2  Bacteria  n/a    normal  0.184303 
 
 
-
 
NC_008146  Mmcs_0601  LuxR family transcriptional regulator  50.79 
 
 
362 aa  59.3  0.00000005  Mycobacterium sp. MCS  Bacteria  normal  0.0424848  n/a   
 
 
-
 
NC_008705  Mkms_0614  LuxR family transcriptional regulator  50.79 
 
 
362 aa  59.3  0.00000005  Mycobacterium sp. KMS  Bacteria  normal  0.987495  normal 
 
 
-
 
NC_009077  Mjls_0592  LuxR family transcriptional regulator  50.79 
 
 
362 aa  59.3  0.00000005  Mycobacterium sp. JLS  Bacteria  normal  normal 
 
 
-
 
NC_013204  Elen_3038  transcriptional regulator, LuxR family  42.62 
 
 
569 aa  59.3  0.00000005  Eggerthella lenta DSM 2243  Bacteria  normal  normal 
 
 
-
 
NC_013204  Elen_0496  transcriptional regulator, LuxR family  34.75 
 
 
510 aa  57  0.0000002  Eggerthella lenta DSM 2243  Bacteria  normal  normal  0.484054 
 
 
-
 
NC_013204  Elen_0518  transcriptional regulator, LuxR family  37.35 
 
 
488 aa  57.4  0.0000002  Eggerthella lenta DSM 2243  Bacteria  normal  0.982453  normal  0.339001 
 
 
-
 
NC_013204  Elen_2723  transcriptional regulator, LuxR family  46.03 
 
 
509 aa  56.6  0.0000004  Eggerthella lenta DSM 2243  Bacteria  normal  0.397924  normal 
 
 
-
 
NC_013170  Ccur_03610  response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein  46.43 
 
 
470 aa  55.8  0.0000005  Cryptobacterium curtum DSM 15641  Bacteria  normal  0.166414  normal  0.0491532 
 
 
-
 
NC_008340  Mlg_2405  LuxR family transcriptional regulator  42.5 
 
 
402 aa  56.2  0.0000005  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  hitchhiker  0.00445538 
 
 
-
 
NC_013170  Ccur_13650  response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein  40.32 
 
 
464 aa  55.8  0.0000006  Cryptobacterium curtum DSM 15641  Bacteria  normal  normal 
 
 
-
 
NC_013204  Elen_2114  transcriptional regulator, LuxR family  36.36 
 
 
191 aa  55.5  0.0000007  Eggerthella lenta DSM 2243  Bacteria  unclonable  0.00000000451621  normal  0.459179 
 
 
-
 
NC_013204  Elen_0531  transcriptional regulator, LuxR family  34.55 
 
 
529 aa  55.1  0.0000009  Eggerthella lenta DSM 2243  Bacteria  normal  0.614613  normal  0.848046 
 
 
-
 
NC_013204  Elen_0617  transcriptional regulator, LuxR family  42.19 
 
 
505 aa  54.7  0.000001  Eggerthella lenta DSM 2243  Bacteria  normal  0.0935525  normal 
 
 
-
 
NC_013165  Shel_12700  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  41.89 
 
 
488 aa  54.3  0.000001  Slackia heliotrinireducens DSM 20476  Bacteria  normal  normal 
 
 
-
 
NC_007794  Saro_3089  LuxR family transcriptional regulator  45.45 
 
 
416 aa  54.7  0.000001  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  n/a   
 
 
-
 
NC_013204  Elen_0445  transcriptional regulator, LuxR family  38.36 
 
 
534 aa  54.7  0.000001  Eggerthella lenta DSM 2243  Bacteria  normal  normal 
 
 
-
 
NC_013170  Ccur_12490  response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein  45.9 
 
 
560 aa  53.5  0.000002  Cryptobacterium curtum DSM 15641  Bacteria  normal  normal 
 
 
-
 
NC_013165  Shel_24540  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  41.27 
 
 
536 aa  53.9  0.000002  Slackia heliotrinireducens DSM 20476  Bacteria  normal  normal 
 
 
-
 
NC_013204  Elen_1389  transcriptional regulator, LuxR family  37.1 
 
 
478 aa  53.9  0.000002  Eggerthella lenta DSM 2243  Bacteria  normal  0.544965  normal 
 
 
-
 
NC_013204  Elen_0436  transcriptional regulator, LuxR family  41.94 
 
 
501 aa  53.9  0.000002  Eggerthella lenta DSM 2243  Bacteria  normal  normal 
 
 
-
 
NC_013204  Elen_0597  transcriptional regulator, LuxR family  46.43 
 
 
493 aa  53.9  0.000002  Eggerthella lenta DSM 2243  Bacteria  normal  0.882562  normal 
 
 
-
 
NC_013165  Shel_05580  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  42.62 
 
 
512 aa  54.3  0.000002  Slackia heliotrinireducens DSM 20476  Bacteria  normal  0.735856  normal 
 
 
-
 
NC_013165  Shel_06810  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  44.12 
 
 
520 aa  53.5  0.000003  Slackia heliotrinireducens DSM 20476  Bacteria  normal  normal  0.521043 
 
 
-
 
NC_013204  Elen_2655  transcriptional regulator, LuxR family  40.32 
 
 
470 aa  53.1  0.000003  Eggerthella lenta DSM 2243  Bacteria  normal  normal  0.149331 
 
 
-
 
NC_013165  Shel_03730  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  41.82 
 
 
426 aa  53.1  0.000004  Slackia heliotrinireducens DSM 20476  Bacteria  normal  0.532687  normal 
 
 
-
 
NC_013170  Ccur_00480  response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein  39.34 
 
 
606 aa  53.1  0.000004  Cryptobacterium curtum DSM 15641  Bacteria  decreased coverage  0.00118843  normal 
 
 
-
 
NC_013170  Ccur_13370  response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein  30.28 
 
 
537 aa  52.8  0.000005  Cryptobacterium curtum DSM 15641  Bacteria  normal  0.925648  normal 
 
 
-
 
NC_013204  Elen_2779  transcriptional regulator, LuxR family  42.11 
 
 
505 aa  52.8  0.000005  Eggerthella lenta DSM 2243  Bacteria  normal  normal  0.980405 
 
 
-
 
NC_013204  Elen_0440  transcriptional regulator, LuxR family  41.94 
 
 
526 aa  52.8  0.000005  Eggerthella lenta DSM 2243  Bacteria  normal  normal 
 
 
-
 
NC_013204  Elen_2532  transcriptional regulator, LuxR family  27.47 
 
 
500 aa  52.8  0.000005  Eggerthella lenta DSM 2243  Bacteria  normal  normal 
 
 
-
 
NC_013165  Shel_16610  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  37.04 
 
 
491 aa  52.8  0.000005  Slackia heliotrinireducens DSM 20476  Bacteria  normal  0.0119595  normal  0.714327 
 
 
-
 
NC_013204  Elen_0181  transcriptional regulator, LuxR family  45.9 
 
 
600 aa  52.4  0.000006  Eggerthella lenta DSM 2243  Bacteria  normal  0.294561  normal 
 
 
-
 
NC_013204  Elen_0108  transcriptional regulator, LuxR family  31 
 
 
493 aa  52.4  0.000006  Eggerthella lenta DSM 2243  Bacteria  normal  0.44109  normal 
 
 
-
 
NC_013204  Elen_0992  transcriptional regulator, LuxR family  39.34 
 
 
493 aa  52  0.000007  Eggerthella lenta DSM 2243  Bacteria  normal  normal 
 
 
-
 
NC_013204  Elen_0485  transcriptional regulator, LuxR family  46.03 
 
 
537 aa  52.4  0.000007  Eggerthella lenta DSM 2243  Bacteria  normal  normal  0.619389 
 
 
-
 
NC_013204  Elen_2786  transcriptional regulator, LuxR family  50 
 
 
511 aa  51.6  0.000009  Eggerthella lenta DSM 2243  Bacteria  normal  normal  0.0490323 
 
 
-
 
NC_013204  Elen_0368  transcriptional regulator, LuxR family  39.34 
 
 
516 aa  52  0.000009  Eggerthella lenta DSM 2243  Bacteria  normal  normal 
 
 
-
 
NC_013204  Elen_2696  transcriptional regulator, LuxR family  40.98 
 
 
535 aa  51.2  0.00001  Eggerthella lenta DSM 2243  Bacteria  normal  normal 
 
 
-
 
NC_013170  Ccur_13460  response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein  43.64 
 
 
472 aa  51.6  0.00001  Cryptobacterium curtum DSM 15641  Bacteria  normal  normal 
 
 
-
 
NC_007974  Rmet_5022  LuxR family LuxR family transcriptional regulator  37.82 
 
 
947 aa  51.6  0.00001  Cupriavidus metallidurans CH34  Bacteria  normal  0.362862  normal  0.157407 
 
 
-
 
NC_009654  Mmwyl1_3175  response regulator receiver protein  32.61 
 
 
250 aa  51.2  0.00001  Marinomonas sp. MWYL1  Bacteria  hitchhiker  0.000000721008  normal 
 
 
-
 
NC_013204  Elen_0523  transcriptional regulator, LuxR family  34.25 
 
 
511 aa  51.6  0.00001  Eggerthella lenta DSM 2243  Bacteria  normal  0.500884  normal  0.253762 
 
 
-
 
NC_007347  Reut_A0027  LuxR family transcriptional regulator  36.96 
 
 
381 aa  50.8  0.00002  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_013204  Elen_2108  transcriptional regulator, LuxR family  36.07 
 
 
516 aa  50.8  0.00002  Eggerthella lenta DSM 2243  Bacteria  hitchhiker  0.00926757  normal  0.183235 
 
 
-
 
NC_013204  Elen_0473  transcriptional regulator, LuxR family  40 
 
 
488 aa  50.8  0.00002  Eggerthella lenta DSM 2243  Bacteria  normal  0.815594  normal 
 
 
-
 
NC_013124  Afer_0180  two component transcriptional regulator, LuxR family  34.38 
 
 
216 aa  50.8  0.00002  Acidimicrobium ferrooxidans DSM 10331  Bacteria  normal  0.245465  n/a   
 
 
-
 
NC_013204  Elen_0506  transcriptional regulator, LuxR family  39.34 
 
 
519 aa  50.8  0.00002  Eggerthella lenta DSM 2243  Bacteria  normal  normal  0.274884 
 
 
-
 
NC_009524  PsycPRwf_0663  two component LuxR family transcriptional regulator  42.31 
 
 
219 aa  50.4  0.00002  Psychrobacter sp. PRwf-1  Bacteria  normal  normal 
 
 
-
 
NC_013501  Rmar_1005  two component transcriptional regulator, LuxR family  44.26 
 
 
211 aa  50.1  0.00003  Rhodothermus marinus DSM 4252  Bacteria  normal  n/a   
 
 
-
 
NC_013165  Shel_26890  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  36.07 
 
 
515 aa  49.7  0.00003  Slackia heliotrinireducens DSM 20476  Bacteria  normal  normal 
 
 
-
 
NC_013170  Ccur_13550  response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein  40 
 
 
506 aa  50.1  0.00003  Cryptobacterium curtum DSM 15641  Bacteria  normal  normal 
 
 
-
 
NC_011369  Rleg2_3999  transcriptional regulator, LuxR family  27.43 
 
 
260 aa  49.7  0.00003  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  decreased coverage  0.0000000117104  normal 
 
 
-
 
NC_013204  Elen_0529  transcriptional regulator, LuxR family  42.86 
 
 
518 aa  49.7  0.00004  Eggerthella lenta DSM 2243  Bacteria  normal  0.401207  normal  0.573322 
 
 
-
 
NC_011769  DvMF_1879  ATP-dependent transcriptional regulator, MalT-like, LuxR family  45.61 
 
 
839 aa  49.7  0.00004  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_007778  RPB_2794  LuxR family transcriptional regulator  39.34 
 
 
378 aa  49.7  0.00004  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_013204  Elen_1008  transcriptional regulator, LuxR family  36.76 
 
 
495 aa  49.7  0.00004  Eggerthella lenta DSM 2243  Bacteria  normal  0.831923  normal  0.0679507 
 
 
-
 
NC_012850  Rleg_4328  transcriptional regulator, LuxR family  27.43 
 
 
260 aa  49.7  0.00004  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  decreased coverage  0.00000000127099  normal  0.0225245 
 
 
-
 
NC_013204  Elen_3022  ATP-dependent transcriptional regulator, MalT- like, LuxR family  37.7 
 
 
485 aa  49.3  0.00005  Eggerthella lenta DSM 2243  Bacteria  normal  0.709367  normal 
 
 
-
 
NC_013204  Elen_0976  transcriptional regulator, LuxR family  41.27 
 
 
501 aa  49.3  0.00005  Eggerthella lenta DSM 2243  Bacteria  normal  normal  0.018057 
 
 
-
 
NC_013204  Elen_0615  transcriptional regulator, LuxR family  36.9 
 
 
462 aa  49.3  0.00005  Eggerthella lenta DSM 2243  Bacteria  unclonable  0.000000110739  normal 
 
 
-
 
NC_013204  Elen_0289  transcriptional regulator, LuxR family  36.07 
 
 
498 aa  49.3  0.00005  Eggerthella lenta DSM 2243  Bacteria  normal  normal  0.797409 
 
 
-
 
NC_013204  Elen_0630  transcriptional regulator, LuxR family  36.36 
 
 
528 aa  49.3  0.00005  Eggerthella lenta DSM 2243  Bacteria  normal  normal 
 
 
-
 
NC_008825  Mpe_A2412  hypothetical protein  40.62 
 
 
377 aa  48.9  0.00007  Methylibium petroleiphilum PM1  Bacteria  normal  0.390021  normal 
 
 
-
 
NC_013204  Elen_2932  transcriptional regulator, LuxR family  38.18 
 
 
492 aa  48.5  0.00008  Eggerthella lenta DSM 2243  Bacteria  normal  normal 
 
 
-
 
NC_013165  Shel_22730  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  43.64 
 
 
502 aa  48.5  0.00008  Slackia heliotrinireducens DSM 20476  Bacteria  normal  normal 
 
 
-
 
NC_013204  Elen_0520  transcriptional regulator, LuxR family  38.71 
 
 
520 aa  48.5  0.00008  Eggerthella lenta DSM 2243  Bacteria  normal  normal  0.1412 
 
 
-
 
NC_002947  PP_2587  LuxR family transcriptional regulator  37.7 
 
 
280 aa  48.5  0.00009  Pseudomonas putida KT2440  Bacteria  normal  0.0358062  normal  0.430196 
 
 
-
 
NC_010322  PputGB1_3251  LuxR family transcriptional regulator  37.7 
 
 
280 aa  48.5  0.00009  Pseudomonas putida GB-1  Bacteria  normal  normal  0.139103 
 
 
-
 
NC_011894  Mnod_0040  transcriptional regulator, LuxR family  42.47 
 
 
370 aa  47.8  0.0001  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.864605  n/a   
 
 
-
 
NC_007348  Reut_B4164  LuxR transcriptional regulator  44.83 
 
 
960 aa  48.5  0.0001  Ralstonia eutropha JMP134  Bacteria  normal  0.950161  n/a   
 
 
-
 
NC_011988  Avi_5374  two component response regulator  49.12 
 
 
779 aa  48.1  0.0001  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_007802  Jann_3545  LuxR family transcriptional regulator  34.94 
 
 
394 aa  47.8  0.0001  Jannaschia sp. CCS1  Bacteria  normal  normal  0.851404 
 
 
-
 
NC_013204  Elen_2758  transcriptional regulator, LuxR family  30.67 
 
 
523 aa  47.8  0.0001  Eggerthella lenta DSM 2243  Bacteria  normal  normal 
 
 
-
 
NC_013204  Elen_0461  transcriptional regulator, LuxR family  34.15 
 
 
542 aa  48.1  0.0001  Eggerthella lenta DSM 2243  Bacteria  normal  normal 
 
 
-
 
NC_008148  Rxyl_3188  LuxR family transcriptional regulator  39.66 
 
 
368 aa  48.1  0.0001  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.0110301  n/a   
 
 
-
 
NC_013204  Elen_0421  transcriptional regulator, LuxR family  38.71 
 
 
552 aa  48.1  0.0001  Eggerthella lenta DSM 2243  Bacteria  normal  0.0413788  hitchhiker  0.00000000225621 
 
 
-
 
NC_009719  Plav_0160  response regulator receiver protein  36.36 
 
 
279 aa  48.1  0.0001  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal 
 
 
-
 
NC_013757  Gobs_4001  two component transcriptional regulator, LuxR family  43.1 
 
 
236 aa  47  0.0002  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_007404  Tbd_1743  two component LuxR family transcriptional regulator  48.28 
 
 
209 aa  47  0.0002  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  normal  0.518394 
 
 
-
 
NC_013165  Shel_27360  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  37.1 
 
 
517 aa  47.8  0.0002  Slackia heliotrinireducens DSM 20476  Bacteria  normal  0.0445329  normal 
 
 
-
 
NC_013204  Elen_0514  transcriptional regulator, LuxR family  30.16 
 
 
493 aa  47  0.0002  Eggerthella lenta DSM 2243  Bacteria  normal  normal  0.559597 
 
 
-
 
NC_007492  Pfl01_4558  LuxR family transcriptional regulator  38.89 
 
 
266 aa  47.4  0.0002  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_013061  Phep_1616  response regulator receiver  35.19 
 
 
210 aa  47.4  0.0002  Pedobacter heparinus DSM 2366  Bacteria  normal  0.869432  normal 
 
 
-
 
NC_007948  Bpro_1379  LuxR family transcriptional regulator  38.16 
 
 
385 aa  47.8  0.0002  Polaromonas sp. JS666  Bacteria  normal  normal  0.366472 
 
 
-
 
NC_013204  Elen_0406  transcriptional regulator, LuxR family  39.24 
 
 
486 aa  47.8  0.0002  Eggerthella lenta DSM 2243  Bacteria  normal  normal  0.0269651 
 
 
-
 
NC_013204  Elen_0489  transcriptional regulator, LuxR family  35.51 
 
 
468 aa  47.4  0.0002  Eggerthella lenta DSM 2243  Bacteria  normal  normal  0.257042 
 
 
-
 
NC_007973  Rmet_2534  ATP-dependent transcription regulator LuxR  41.43 
 
 
925 aa  47.4  0.0002  Cupriavidus metallidurans CH34  Bacteria  normal  0.41261  normal  0.169149 
 
 
-
 
NC_013204  Elen_0123  transcriptional regulator, LuxR family  34.12 
 
 
492 aa  47.4  0.0002  Eggerthella lenta DSM 2243  Bacteria  normal  0.891774  normal 
 
 
-
 
NC_013204  Elen_2816  transcriptional regulator, LuxR family  31.33 
 
 
471 aa  47.4  0.0002  Eggerthella lenta DSM 2243  Bacteria  normal  0.138304  hitchhiker  0.00338242 
 
 
-
 
NC_008740  Maqu_0514  regulatory protein, LuxR  44.26 
 
 
385 aa  47  0.0002  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_010501  PputW619_2873  LuxR family transcriptional regulator  39.34 
 
 
282 aa  47.4  0.0002  Pseudomonas putida W619  Bacteria  normal  0.246205  normal 
 
 
-
 
NC_009511  Swit_3356  regulatory protein, LuxR  44.07 
 
 
373 aa  47.8  0.0002  Sphingomonas wittichii RW1  Bacteria  normal  normal  0.734282 
 
 
-
 
NC_009512  Pput_3129  LuxR family transcriptional regulator  37.7 
 
 
303 aa  47.8  0.0002  Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_013165  Shel_11580  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  34.43 
 
 
515 aa  47  0.0003  Slackia heliotrinireducens DSM 20476  Bacteria  normal  0.937657  normal 
 
 
-
 
NC_013204  Elen_2699  transcriptional regulator, LuxR family  41.82 
 
 
478 aa  47  0.0003  Eggerthella lenta DSM 2243  Bacteria  normal  normal 
 
 
-
 
NC_013170  Ccur_01760  response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein  35.48 
 
 
546 aa  47  0.0003  Cryptobacterium curtum DSM 15641  Bacteria  normal  hitchhiker  0.0000265618 
 
 
-
 
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