Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RS04789 |
Symbol | RSp1512 |
ID | 1223824 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia solanacearum GMI1000 |
Kingdom | Bacteria |
Replicon accession | NC_003296 |
Strand | - |
Start bp | 1895465 |
End bp | 1896163 |
Gene Length | 699 bp |
Protein Length | 232 aa |
Translation table | 11 |
GC content | 73% |
IMG OID | 637241375 |
Product | putative transcription regulator protein |
Protein accession | NP_523071 |
Protein GI | 17549731 |
COG category | [K] Transcription |
COG ID | [COG2771] DNA-binding HTH domain-containing proteins |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 0.814651 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 0.0984639 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGAGACGG GCGCCGCCGA CAGCGCCGGC CACGCCCGGC ATGCGATCGT GCCGTTCGTT GTCCCAGCCT CCCGCGCGTT GTCCACCCTG CTCAGGCAGC TGTATGCGGC CGCCTGCACG GGGCAGGCCT CGGATGTGAT GGAGGTCGTG CGCATCGCCT GGCACGCGGG GCATGCCATG GCACTGGTGC GCTGGCGGCA CGATGGCCGG TGGCGGTGGG TCGCCTCGCG CGGCACGCAT GCGCCGATGC TGCTCTGGCA GGCCGCGCAC GGTGAAGCCT CGGTCACGTC CTGGCCGTTG ATCGATGCCG AAGTACAGGG CATGGTCTGG ACATCCGGCC AGGCCGAGCC CGGCGCGCTG CCGCGGGCCG CCACGGTTGC CGAGGACGAC GTGCTGCCGC ATCTCGCGCA GGCCCTGGTG CTGTGCTGGG AGCGGGATCG GGGGGCCGAA GCCGCCGATA CGGCTGCGAG CGCGTCGGCG GCACGCCTGC GGTTGGCCGA GATGTTTCAC CTGACCCGCC GCGAAGCCGA CGTCGCCGAC CTGCTGGCGC GCGGCGCCGG CCCGGCGCTG ATCGCGCGCA CGCTCGGCAT CTCGCGCGAT ACCGTGCGCA CCCACCTCAA GCACGTCTAC CGCAAGACCA ACACGCACGG CCAGTGCGAT GTGGTGCGGC TCATGCTGGC CGCCACCGCG CATCGCTAG
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Protein sequence | METGAADSAG HARHAIVPFV VPASRALSTL LRQLYAAACT GQASDVMEVV RIAWHAGHAM ALVRWRHDGR WRWVASRGTH APMLLWQAAH GEASVTSWPL IDAEVQGMVW TSGQAEPGAL PRAATVAEDD VLPHLAQALV LCWERDRGAE AADTAASASA ARLRLAEMFH LTRREADVAD LLARGAGPAL IARTLGISRD TVRTHLKHVY RKTNTHGQCD VVRLMLAATA HR
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