| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Elen_2108 |
|---|
| Symbol | |
|---|
| ID | 8416426 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Eggerthella lenta DSM 2243 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013204 |
|---|
| Strand | + |
|---|
| Start bp | 2481086 |
|---|
| End bp | 2482636 |
|---|
| Gene Length | 1551 bp |
|---|
| Protein Length | 516 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 645025091 |
|---|
| Product | transcriptional regulator, LuxR family |
|---|
| Protein accession | YP_003182460 |
|---|
| Protein GI | 257791854 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.00926757 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 0.183235 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCAAACG GCACGTACTT GAACAGGCTA GCCGCCCAAC CTCCCATCCG TTTCCGCCCC
CGCCTTTTGC TGTTAGCGGC TTTCCTTGCC TCGGCGCCCC TCTATCCGCC CAACTCCTAC
CTTATGCTGC GTTTCGCACC GAACGTCTCG CCCGCTGGCG ACTTTCTTTT CGCCATGCTG
CTCTCTTGCT TTGCGACAGC CCTCGCCATC CTGCTCTTCT CGGCGCAACG CCCCAGCTGG
CCTGGCTTCG AAACGCGCAA AGGGCGCCCG ATCGCCACAG GCTGCGCTTG GACGTACGCC
GCAGTCTTGG TGGCGATCTG GATTCTGCTC GCAGCCGGAT ACCGTAACGT CGTCTTGTTC
GCAGCGCTCG GCGTCACGGC CGGGGCATGC ATGGCGCCGG TGATCATGCG GTGGGTGCGT
CTGTATCTAA TGGATTTTCG CAGCGTGATG TTCTACGGTG CCATCGCGTG CGCCAGCTCG
TCGGCTGTCG CCTGGATCGT TTCGCTTTTG TCCGACCCGT TCGCGGTAGC CGCGGAAGGC
GTTCTCGCCA TAACGGGATC GGTTCTCCCC CTGTTGTTCG GAATCGAGAA ATGCACGCAC
GAGACGGATG AGGACGCACA GAGCGTCTCC GGCATCGAAA ACGGCGGGGG CGGCTTCACC
GGCTCCCCTG ACGCGGAAAG CCCGTCGAAC ACGCTGACAG GGCTTGCATC TTCTCTCAGG
ACATTCCTAT CGATCATATG GGTGCCGCTG CTGGGCTTTC TCGTCTGCTC GTTCATGATG
GCCGCTTATT CGTTCGACGC CGACGTGGGA GCGGGACGAA GCGAGTACAC GGGCGCCATC
GTTGCATCGG CCGTCGTCGT GGCGCTTTGC GCAATGCGGT TGAAAAGCCC GTTCGTTATG
CTGATCGACC GCTTGGCTGT TCCGGCGTGC GTCGCGGTGA GCATCGTGCT GGGCAGCTTC
CCGACGGGGA CGACGCTGTT CGTGGCGGGA GCGATGCTCG TATACGCGCC TCTCGCCCTG
CTATCGCTCT TCGCGCTCTC ATCGCTGGTC GCCATGGCCG AGGCGGGAGA ATTCCCTCTG
CCCTTCGTGT TCTCGGCGGC CTTCCTGCTC AGCTGTGCGG CATCGCTTTT GGGCATGACG
GTGCAGGCGA ACGTGCCGCC GGATGTGAAT TTAGGGCCGT ACCTGTGGGT CGTGCTTTCC
TCATACTTCT GCATCGTGGT GGTGCACCTC GGCTTCGTCG CATGGCAGCA GGCTTGCTCG
ACGGACGATC CCGACGCTTT GCAGGATGCA GGCATGCGGA ACGAAGGTGA AACCGATACG
CTGCATGCAT TGCAGCACGA ACGCATCGTG ACGCTAGCGA ACGGGTACGC CCTCACGAAG
CGCGAACGCG AGATACTGCA GTACCTGAGC CTGGGATACG GGTCGGTATA CATCTCCAAA
ACGCTGTTCA TCTCCGACAA CACCGCGCGC ACCCACATCC GCAATATTTA CCGCAAACTG
GACGTCAGCT CGCGAGAAGA GCTGCTGTCG CTGGTCAACG GCATGAAATG A
|
|---|
| Protein sequence | MANGTYLNRL AAQPPIRFRP RLLLLAAFLA SAPLYPPNSY LMLRFAPNVS PAGDFLFAML
LSCFATALAI LLFSAQRPSW PGFETRKGRP IATGCAWTYA AVLVAIWILL AAGYRNVVLF
AALGVTAGAC MAPVIMRWVR LYLMDFRSVM FYGAIACASS SAVAWIVSLL SDPFAVAAEG
VLAITGSVLP LLFGIEKCTH ETDEDAQSVS GIENGGGGFT GSPDAESPSN TLTGLASSLR
TFLSIIWVPL LGFLVCSFMM AAYSFDADVG AGRSEYTGAI VASAVVVALC AMRLKSPFVM
LIDRLAVPAC VAVSIVLGSF PTGTTLFVAG AMLVYAPLAL LSLFALSSLV AMAEAGEFPL
PFVFSAAFLL SCAASLLGMT VQANVPPDVN LGPYLWVVLS SYFCIVVVHL GFVAWQQACS
TDDPDALQDA GMRNEGETDT LHALQHERIV TLANGYALTK REREILQYLS LGYGSVYISK
TLFISDNTAR THIRNIYRKL DVSSREELLS LVNGMK
|
|---|
| |