| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_3545 |
|---|
| Symbol | |
|---|
| ID | 3936020 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Jannaschia sp. CCS1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007802 |
|---|
| Strand | - |
|---|
| Start bp | 3609032 |
|---|
| End bp | 3610216 |
|---|
| Gene Length | 1185 bp |
|---|
| Protein Length | 394 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 637905920 |
|---|
| Product | LuxR family transcriptional regulator |
|---|
| Protein accession | YP_511487 |
|---|
| Protein GI | 89056036 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG2771] DNA-binding HTH domain-containing proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.851404 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACCGGA TCGGGCCCGC GGAGCGACCC ATTCTAAGTG AAGGAGCGAA GCGTGTGACG
GCAGATCTGC TGCAAACGAT CAACACGATC TATGACTGCG TTGGCGATGA ACTGGATCAT
CACCGGTGCC TGGCCGCGAT TGGAGAAGCC GTTGACGGGA CATCCCTGTC CGTTGGGGAA
GTCTTTCCGT TTTTCGGCCG CATACGGCTG ATTGCAAATT ATTGCGTTCC GGAAGATGCC
GCTCGGATCA TGGTCGATTC TTTTTCAACA ATCGAATCCA ATTCCTTCAT GAAAAACCTT
CCAAGGTTTC CAGAAGGCGT TCCCTTCATG CGCCGAACCT TTGTGTCTGA TGAGGAGCAT
TATCAAAGTG ACATCTATAA ACTTGCATCG GAGCCATGGG GTCTGCACTC CGAAGGGGCG
ACCATCTTCT CCAAGAGTAT TGTCAGCGCA AAATTCTGTG GCTTTTTCAG GCTGCCTGGA
AAGGCCGAGC TTGATATTCA CGACCTTTCG AAGCTGGCTA TTCTAAACGG TCACTATATG
AAAGCAATGA AATTTCAGGA CCGTATTTCT GGCTTGGAAA CAGCATTGCT GCGCGCAAAC
AATGTTCTTG ATTTATTGGA TTTCGGTCTC CTGCTATTTG GTGATCAAAA ATCACCCCTC
TACGTAAACC AGGCGGCTCA CCGGATTCTG GAAAAATCAG ACGTCATGTC CTTGGGGCGC
GATGGGTTGA TATTTTCCAG TTCCAAATCA CAGAACCACT ACGAAAAAAT ATTTAGCAGC
GTCGTTGGTT CAAGATCGAG CCCCACAAAA GGAACCGGCG GGCTGGTACA AGTCTCGCCT
GCGTCTTTCC GGCGGCCCTA CAACGTTGTG GTGCAACCGA TTAGCAGCCA TCAAACCGGT
GTGGCCGATG CCACAATCGG AGTCTTGATT TTTGATCCGA ATGCAAAGCG AACGACCGCC
ATCGAGCTAT TTTCAACCTC CTACGGATTG ACAAAGAAAG AGACTCAACT TGCCCTTCAT
CTTGCGGAAG GTCTGAGTGT TGATGAATAT GCAAAATCCC ACAATGTTAG CATCAATACC
GTACGCACAC ATGTGAGATC AATCTACGAG AAGACAAATA CAACGCGTCA ACCTGAGCTC
GTGAGCCTCA TTTTGCGCCT CACTGCGGGT TTGAATTGGA CCTGA
|
|---|
| Protein sequence | MDRIGPAERP ILSEGAKRVT ADLLQTINTI YDCVGDELDH HRCLAAIGEA VDGTSLSVGE
VFPFFGRIRL IANYCVPEDA ARIMVDSFST IESNSFMKNL PRFPEGVPFM RRTFVSDEEH
YQSDIYKLAS EPWGLHSEGA TIFSKSIVSA KFCGFFRLPG KAELDIHDLS KLAILNGHYM
KAMKFQDRIS GLETALLRAN NVLDLLDFGL LLFGDQKSPL YVNQAAHRIL EKSDVMSLGR
DGLIFSSSKS QNHYEKIFSS VVGSRSSPTK GTGGLVQVSP ASFRRPYNVV VQPISSHQTG
VADATIGVLI FDPNAKRTTA IELFSTSYGL TKKETQLALH LAEGLSVDEY AKSHNVSINT
VRTHVRSIYE KTNTTRQPEL VSLILRLTAG LNWT
|
|---|
| |