87 homologs were found in PanDaTox collection
for query gene Gura_3877 on replicon NC_009483
Organism: Geobacter uraniireducens Rf4



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_009483  Gura_3877  2-hydroxyglutaryl-CoA dehydratase, D-component  100 
 
 		 395 aa  804    Geobacter uraniireducens Rf4  Bacteria  normal  1  n/a   
 
 
-
 
NC_011832  Mpal_1147  2-hydroxyglutaryl-CoA dehydratase D-component  50.51 
 
 		 393 aa  402  1e-111  Methanosphaerula palustris E1-9c  Archaea  normal  0.132933  normal  1 
 
 
-
 
NC_009637  MmarC7_0081  2-hydroxyglutaryl-CoA dehydratase D-component  29.17 
 
 		 373 aa  164  2.0000000000000002e-39  Methanococcus maripaludis C7  Archaea  hitchhiker  0.00790728  hitchhiker  0.00027984 
 
 
-
 
NC_009975  MmarC6_1821  2-hydroxyglutaryl-CoA dehydratase D-component  29.35 
 
 		 373 aa  164  3e-39  Methanococcus maripaludis C6  Archaea  normal  1  n/a   
 
 
-
 
NC_009135  MmarC5_0834  2-hydroxyglutaryl-CoA dehydratase, D-component  28.83 
 
 		 373 aa  161  2e-38  Methanococcus maripaludis C5  Archaea  normal  1  n/a   
 
 
-
 
NC_008554  Sfum_3256  2-hydroxyglutaryl-CoA dehydratase, D-component  30.83 
 
 		 423 aa  149  7e-35  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009635  Maeo_1346  2-hydroxyglutaryl-CoA dehydratase D-component  28.17 
 
 		 372 aa  148  2.0000000000000003e-34  Methanococcus aeolicus Nankai-3  Archaea  normal  0.120946  n/a   
 
 
-
 
NC_007519  Dde_0090  2-hydroxyglutaryl-CoA dehydratase, beta subunit-like  26.95 
 
 		 426 aa  143  5e-33  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  1  n/a   
 
 
-
 
NC_009637  MmarC7_1346  2-hydroxyglutaryl-CoA dehydratase D-component  29.38 
 
 		 373 aa  142  8e-33  Methanococcus maripaludis C7  Archaea  normal  0.922776  normal  0.0249494 
 
 
-
 
NC_009135  MmarC5_1329  2-hydroxyglutaryl-CoA dehydratase, D-component  28.87 
 
 		 373 aa  142  9.999999999999999e-33  Methanococcus maripaludis C5  Archaea  normal  0.360165  n/a   
 
 
-
 
NC_009975  MmarC6_0607  2-hydroxyglutaryl-CoA dehydratase D-component  29.12 
 
 		 373 aa  142  9.999999999999999e-33  Methanococcus maripaludis C6  Archaea  normal  0.422107  n/a   
 
 
-
 
NC_013173  Dbac_1927  2-hydroxyglutaryl-CoA dehydratase D-component  28.49 
 
 		 425 aa  140  6e-32  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.756388  n/a   
 
 
-
 
NC_002967  TDE0389  (R)-2-hydroxyglutaryl-CoA dehydratase, beta subunit, putative  25.6 
 
 		 412 aa  139  7e-32  Treponema denticola ATCC 35405  Bacteria  normal  1  n/a   
 
 
-
 
NC_009634  Mevan_1356  2-hydroxyglutaryl-CoA dehydratase D-component  27.13 
 
 		 373 aa  138  2e-31  Methanococcus vannielii SB  Archaea  normal  0.0888918  n/a   
 
 
-
 
NC_013165  Shel_25470  Benzoyl-CoA reductase/2-hydroxyglutaryl-CoA dehydratase subunit, BcrC/BadD/HgdB  28.23 
 
 		 425 aa  137  5e-31  Slackia heliotrinireducens DSM 20476  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013204  Elen_1690  2-hydroxyglutaryl-CoA dehydratase D-component  28.72 
 
 		 424 aa  135  9.999999999999999e-31  Eggerthella lenta DSM 2243  Bacteria  normal  0.531982  normal  0.740952 
 
 
-
 
NC_008346  Swol_0412  (R)-2-hydroxyglutaryl-CoA dehydratase, beta subunit, putative  26.72 
 
 		 424 aa  134  3e-30  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  1  n/a   
 
 
-
 
NC_013170  Ccur_11360  Benzoyl-CoA reductase/2-hydroxyglutaryl-CoA dehydratase subunit, BcrC/BadD/HgdB  29.41 
 
 		 426 aa  134  3e-30  Cryptobacterium curtum DSM 15641  Bacteria  normal  0.390545  normal  0.8731 
 
 
-
 
NC_011832  Mpal_1311  2-hydroxyglutaryl-CoA dehydratase D-component  27.25 
 
 		 388 aa  132  9e-30  Methanosphaerula palustris E1-9c  Archaea  normal  0.522959  normal  1 
 
 
-
 
NC_010718  Nther_0828  2-hydroxyglutaryl-CoA dehydratase D-component  25.39 
 
 		 393 aa  132  9e-30  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  1  hitchhiker  0.0000331904 
 
 
-
 
NC_002939  GSU2944  (R)-2-hydroxyglutaryl-CoA dehydratase alpha-subunit, putative  27.37 
 
 		 431 aa  130  5.0000000000000004e-29  Geobacter sulfurreducens PCA  Bacteria  normal  1  n/a   
 
 
-
 
NC_013216  Dtox_0119  2-hydroxyglutaryl-CoA dehydratase D-component  26.4 
 
 		 424 aa  128  1.0000000000000001e-28  Desulfotomaculum acetoxidans DSM 771  Bacteria  hitchhiker  0.000350126  normal  0.0170821 
 
 
-
 
NC_013385  Adeg_0387  2-hydroxyglutaryl-CoA dehydratase D-component  27.66 
 
 		 426 aa  127  2.0000000000000002e-28  Ammonifex degensii KC4  Bacteria  normal  1  n/a   
 
 
-
 
NC_011146  Gbem_2040  2-hydroxyglutaryl-CoA dehydratase D-component  26.77 
 
 		 401 aa  127  3e-28  Geobacter bemidjiensis Bem  Bacteria  normal  0.921137  n/a   
 
 
-
 
NC_009715  CCV52592_0873  2-hydroxyglutaryl-CoA dehydratase, D-component  26.54 
 
 		 385 aa  125  1e-27  Campylobacter curvus 525.92  Bacteria  normal  1  n/a   
 
 
-
 
NC_009802  CCC13826_1134  UDP-MurNac-pentapeptide presynthetase  24.55 
 
 		 385 aa  124  2e-27  Campylobacter concisus 13826  Bacteria  normal  0.207036  n/a   
 
 
-
 
NC_011830  Dhaf_1101  2-hydroxyglutaryl-CoA dehydratase D-component  28.88 
 
 		 379 aa  121  1.9999999999999998e-26  Desulfitobacterium hafniense DCB-2  Bacteria  normal  1  n/a   
 
 
-
 
NC_013522  Taci_0254  2-hydroxyglutaryl-CoA dehydratase D-component  28.27 
 
 		 423 aa  122  1.9999999999999998e-26  Thermanaerovibrio acidaminovorans DSM 6589  Bacteria  normal  1  n/a   
 
 
-
 
NC_011883  Ddes_0545  2-hydroxyglutaryl-CoA dehydratase D-component  26.03 
 
 		 379 aa  120  3e-26  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  normal  1  n/a   
 
 
-
 
NC_008554  Sfum_3161  2-hydroxyglutaryl-CoA dehydratase, D-component  24.8 
 
 		 382 aa  118  1.9999999999999998e-25  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007644  Moth_1418  2-hydroxyglutaryl-CoA dehydratase, D-component  25.45 
 
 		 436 aa  118  1.9999999999999998e-25  Moorella thermoacetica ATCC 39073  Bacteria  hitchhiker  0.00133287  normal  0.906732 
 
 
-
 
NC_011769  DvMF_0986  2-hydroxyglutaryl-CoA dehydratase D-component  24.23 
 
 		 379 aa  117  3.9999999999999997e-25  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.345407 
 
 
-
 
NC_014150  Bmur_0617  2-hydroxyglutaryl-CoA dehydratase D-component  26.74 
 
 		 384 aa  116  7.999999999999999e-25  Brachyspira murdochii DSM 12563  Bacteria  normal  1  n/a   
 
 
-
 
NC_002939  GSU2519  (R)-2-hydroxyglutaryl-CoA dehydratase beta-subunit, putative  25.47 
 
 		 387 aa  115  1.0000000000000001e-24  Geobacter sulfurreducens PCA  Bacteria  normal  0.321633  n/a   
 
 
-
 
NC_009634  Mevan_1623  2-hydroxyglutaryl-CoA dehydratase D-component  27.97 
 
 		 373 aa  115  2.0000000000000002e-24  Methanococcus vannielii SB  Archaea  decreased coverage  0.000208392  n/a   
 
 
-
 
NC_002967  TDE0392  (R)-2-hydroxyglutaryl-CoA dehydratase, beta subunit, putative  26.3 
 
 		 392 aa  115  2.0000000000000002e-24  Treponema denticola ATCC 35405  Bacteria  normal  1  n/a   
 
 
-
 
NC_008751  Dvul_0706  2-hydroxyglutaryl-CoA dehydratase, D-component  25.06 
 
 		 380 aa  114  3e-24  Desulfovibrio vulgaris DP4  Bacteria  normal  0.255737  normal  0.505258 
 
 
-
 
NC_007644  Moth_1446  2-hydroxyglutaryl-CoA dehydratase, D-component  24.46 
 
 		 381 aa  107  3e-22  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.629308  normal  0.054659 
 
 
-
 
NC_011830  Dhaf_3912  2-hydroxyglutaryl-CoA dehydratase D-component  23.08 
 
 		 384 aa  107  4e-22  Desulfitobacterium hafniense DCB-2  Bacteria  normal  1  n/a   
 
 
-
 
NC_009253  Dred_1278  2-hydroxyglutaryl-CoA dehydratase, D-component  23.12 
 
 		 385 aa  107  4e-22  Desulfotomaculum reducens MI-1  Bacteria  normal  1  n/a   
 
 
-
 
NC_009712  Mboo_0863  2-hydroxyglutaryl-CoA dehydratase, D-component  24.06 
 
 		 426 aa  106  8e-22  Candidatus Methanoregula boonei 6A8  Archaea  normal  0.0455624  normal  1 
 
 
-
 
NC_013165  Shel_26180  Benzoyl-CoA reductase/2-hydroxyglutaryl-CoA dehydratase subunit, BcrC/BadD/HgdB  25.2 
 
 		 384 aa  104  2e-21  Slackia heliotrinireducens DSM 20476  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009943  Dole_2769  2-hydroxyglutaryl-CoA dehydratase D-component  26.68 
 
 		 379 aa  104  3e-21  Desulfococcus oleovorans Hxd3  Bacteria  normal  1  n/a   
 
 
-
 
NC_013216  Dtox_2825  2-hydroxyglutaryl-CoA dehydratase D-component  26.65 
 
 		 368 aa  104  3e-21  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013517  Sterm_1694  2-hydroxyglutaryl-CoA dehydratase D-component  24.86 
 
 		 382 aa  103  6e-21  Sebaldella termitidis ATCC 33386  Bacteria  normal  1  n/a   
 
 
-
 
NC_008346  Swol_0410  (R)-2-hydroxyglutaryl-CoA dehydratase beta-subunit, putative  23.32 
 
 		 378 aa  103  8e-21  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  0.732282  n/a   
 
 
-
 
NC_008346  Swol_0427  (R)-2-hydroxyglutaryl-CoA dehydratase, beta subunit, putative  26.86 
 
 		 382 aa  102  1e-20  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  1  n/a   
 
 
-
 
NC_007644  Moth_1007  2-hydroxyglutaryl-CoA dehydratase, D-component  25.34 
 
 		 349 aa  102  1e-20  Moorella thermoacetica ATCC 39073  Bacteria  decreased coverage  0.0000000530359  hitchhiker  0.000167288 
 
 
-
 
NC_009943  Dole_2774  2-hydroxyglutaryl-CoA dehydratase D-component  26.34 
 
 		 376 aa  101  2e-20  Desulfococcus oleovorans Hxd3  Bacteria  normal  1  n/a   
 
 
-
 
NC_007575  Suden_0273  2-hydroxyglutaryl-CoA dehydratase, D-component  26 
 
 		 422 aa  101  3e-20  Sulfurimonas denitrificans DSM 1251  Bacteria  normal  1  n/a   
 
 
-
 
NC_010814  Glov_0091  2-hydroxyglutaryl-CoA dehydratase D-component  24.27 
 
 		 429 aa  101  3e-20  Geobacter lovleyi SZ  Bacteria  normal  1  n/a   
 
 
-
 
NC_013512  Sdel_2024  2-hydroxyglutaryl-CoA dehydratase D-component  24.27 
 
 		 439 aa  100  4e-20  Sulfurospirillum deleyianum DSM 6946  Bacteria  normal  1  n/a   
 
 
-
 
NC_008340  Mlg_0785  2-hydroxyglutaryl-CoA dehydratase, D-component  27.96 
 
 		 420 aa  98.2  2e-19  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.237879  normal  1 
 
 
-
 
NC_009800  EcHS_A4563  putative 2-hydroxyglutaryl-CoA dehydratase, D-component  24.32 
 
 		 383 aa  96.7  6e-19  Escherichia coli HS  Bacteria  normal  1  n/a   
 
 
-
 
NC_012892  B21_04167  hypothetical protein  24.32 
 
 		 383 aa  96.7  7e-19  Escherichia coli BL21  Bacteria  normal  0.0394396  n/a   
 
 
-
 
CP001637  EcDH1_3660  2-hydroxyglutaryl-CoA dehydratase D-component  24.32 
 
 		 383 aa  96.7  7e-19  Escherichia coli DH1  Bacteria  normal  0.814301  n/a   
 
 
-
 
CP001509  ECD_04204  predicted 2-hydroxyglutaryl-CoA dehydratase  24.32 
 
 		 383 aa  96.7  7e-19  Escherichia coli BL21(DE3)  Bacteria  normal  0.0605066  n/a   
 
 
-
 
NC_010468  EcolC_3728  2-hydroxyglutaryl-CoA dehydratase D-component  24.32 
 
 		 383 aa  96.7  7e-19  Escherichia coli ATCC 8739  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010498  EcSMS35_4882  putative 2-hydroxyglutaryl-CoA dehydratase, D-component  24.32 
 
 		 383 aa  95.9  1e-18  Escherichia coli SMS-3-5  Bacteria  normal  0.30993  normal  0.992487 
 
 
-
 
NC_009801  EcE24377A_4937  putative 2-hydroxyglutaryl-CoA dehydratase, D-component  24.04 
 
 		 383 aa  95.1  2e-18  Escherichia coli E24377A  Bacteria  normal  1  n/a   
 
 
-
 
NC_011353  ECH74115_5849  putative 2-hydroxyglutaryl-CoA dehydratase, D-component  24.32 
 
 		 383 aa  94.4  4e-18  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  1  normal  0.981774 
 
 
-
 
NC_011004  Rpal_0724  benzoyl-CoA reductase, subunit C  23.98 
 
 		 394 aa  93.6  6e-18  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.377082  n/a   
 
 
-
 
NC_009712  Mboo_0866  2-hydroxyglutaryl-CoA dehydratase, D-component  23.12 
 
 		 383 aa  91.7  2e-17  Candidatus Methanoregula boonei 6A8  Archaea  normal  0.327302  normal  1 
 
 
-
 
NC_008609  Ppro_1278  2-hydroxyglutaryl-CoA dehydratase, D-component  26.08 
 
 		 413 aa  91.7  2e-17  Pelobacter propionicus DSM 2379  Bacteria  normal  1  n/a   
 
 
-
 
NC_007925  RPC_1029  benzoyl-CoA reductase, subunit C  24.52 
 
 		 394 aa  90.5  5e-17  Rhodopseudomonas palustris BisB18  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013165  Shel_25330  Benzoyl-CoA reductase/2-hydroxyglutaryl-CoA dehydratase subunit, BcrC/BadD/HgdB  24.73 
 
 		 390 aa  90.1  6e-17  Slackia heliotrinireducens DSM 20476  Bacteria  normal  1  normal  0.8257 
 
 
-
 
NC_013216  Dtox_1465  2-hydroxyglutaryl-CoA dehydratase D-component  20.69 
 
 		 369 aa  88.2  2e-16  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007958  RPD_1538  benzoyl-CoA reductase, subunit C  23.98 
 
 		 394 aa  87.4  4e-16  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.130058  normal  1 
 
 
-
 
NC_011662  Tmz1t_2951  benzoyl-CoA reductase, subunit C  25.23 
 
 		 386 aa  83.2  0.000000000000007  Thauera sp. MZ1T  Bacteria  normal  0.689086  n/a   
 
 
-
 
NC_007925  RPC_2055  2-hydroxyglutaryl-CoA dehydratase, D-component  24.31 
 
 		 376 aa  82  0.00000000000002  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.574959  normal  0.736744 
 
 
-
 
NC_013385  Adeg_1708  2-hydroxyglutaryl-CoA dehydratase D-component  23.84 
 
 		 322 aa  80.1  0.00000000000006  Ammonifex degensii KC4  Bacteria  normal  1  n/a   
 
 
-
 
NC_009943  Dole_0930  2-hydroxyglutaryl-CoA dehydratase D-component  23.21 
 
 		 377 aa  74.3  0.000000000003  Desulfococcus oleovorans Hxd3  Bacteria  normal  0.0187897  n/a   
 
 
-
 
NC_009943  Dole_0891  2-hydroxyglutaryl-CoA dehydratase D-component  24.07 
 
 		 373 aa  73.6  0.000000000006  Desulfococcus oleovorans Hxd3  Bacteria  normal  1  n/a   
 
 
-
 
NC_009943  Dole_1686  2-hydroxyglutaryl-CoA dehydratase D-component  24.32 
 
 		 370 aa  68.6  0.0000000002  Desulfococcus oleovorans Hxd3  Bacteria  normal  0.0274681  n/a   
 
 
-
 
NC_010814  Glov_2401  2-hydroxyglutaryl-CoA dehydratase D-component  22.89 
 
 		 397 aa  66.6  0.0000000008  Geobacter lovleyi SZ  Bacteria  normal  1  n/a   
 
 
-
 
NC_011830  Dhaf_3454  2-hydroxyglutaryl-CoA dehydratase D-component  23.58 
 
 		 386 aa  62  0.00000002  Desulfitobacterium hafniense DCB-2  Bacteria  normal  1  n/a   
 
 
-
 
NC_012918  GM21_2867  Benzoyl-CoA reductase  25.12 
 
 		 415 aa  55.8  0.000001  Geobacter sp. M21  Bacteria  n/a    normal  1 
 
 
-
 
NC_011832  Mpal_1135  2-hydroxyglutaryl-CoA dehydratase D-component  25.34 
 
 		 494 aa  55.5  0.000002  Methanosphaerula palustris E1-9c  Archaea  normal  1  normal  0.207631 
 
 
-
 
NC_010718  Nther_1772  2-hydroxyglutaryl-CoA dehydratase D-component  21.1 
 
 		 358 aa  51.6  0.00003  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  1  normal  0.39587 
 
 
-
 
NC_010320  Teth514_1899  2-hydroxyglutaryl-CoA dehydratase, D-component  22.76 
 
 		 416 aa  50.8  0.00004  Thermoanaerobacter sp. X514  Bacteria  normal  1  n/a   
 
 
-
 
NC_011661  Dtur_1747  2-hydroxyglutaryl-CoA dehydratase D-component  32.94 
 
 		 339 aa  50.4  0.00005  Dictyoglomus turgidum DSM 6724  Bacteria  normal  1  n/a   
 
 
-
 
NC_011832  Mpal_1137  2-hydroxyglutaryl-CoA dehydratase D-component  24.75 
 
 		 494 aa  49.7  0.00008  Methanosphaerula palustris E1-9c  Archaea  normal  0.417243  normal  1 
 
 
-
 
NC_011832  Mpal_1146  2-hydroxyglutaryl-CoA dehydratase D-component  23.76 
 
 		 501 aa  48.5  0.0002  Methanosphaerula palustris E1-9c  Archaea  normal  0.114062  normal  1 
 
 
-
 
NC_011146  Gbem_1413  2-hydroxyglutaryl-CoA dehydratase D-component  24.15 
 
 		 415 aa  47.4  0.0004  Geobacter bemidjiensis Bem  Bacteria  normal  0.657921  n/a   
 
 
-
 
NC_013385  Adeg_1707  2-hydroxyglutaryl-CoA dehydratase D-component  22.53 
 
 		 415 aa  46.6  0.0008  Ammonifex degensii KC4  Bacteria  normal  1  n/a   
 
 
-
 
NC_011899  Hore_16090  2-hydroxyglutaryl-CoA dehydratase D-component  27.03 
 
 		 355 aa  45.8  0.001  Halothermothrix orenii H 168  Bacteria  normal  1  n/a   
 
 
-
 
NC_011830  Dhaf_3453  2-hydroxyglutaryl-CoA dehydratase D-component  21.39 
 
 		 409 aa  43.9  0.005  Desulfitobacterium hafniense DCB-2  Bacteria  normal  1  n/a   
 
 
-
 
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