| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MmarC5_1329 |
|---|
| Symbol | |
|---|
| ID | 4929120 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanococcus maripaludis C5 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009135 |
|---|
| Strand | + |
|---|
| Start bp | 1275937 |
|---|
| End bp | 1277058 |
|---|
| Gene Length | 1122 bp |
|---|
| Protein Length | 373 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 34% |
|---|
| IMG OID | 640166822 |
|---|
| Product | 2-hydroxyglutaryl-CoA dehydratase, D-component |
|---|
| Protein accession | YP_001097841 |
|---|
| Protein GI | 134046356 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1775] Benzoyl-CoA reductase/2-hydroxyglutaryl-CoA dehydratase subunit, BcrC/BadD/HgdB |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.360165 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAAGAGT TAAACTCCAT AAAAAAAATT AATGAAGCAT TTACAAAAAG AAAAGATGAA
TTATATGCGC AAAAAGACGA AGGAAAAAAA GTATTTGGGC TATTTTGTAC ATTTGTTCCA
ACAGAATTAA TTTTGGCAGC TGACGCAATT CCGGTAGGAC TTTGTGGTGG AAAAGAAGCT
ACAATACCTT CTGCAGAAGA AATTTTGCCA AGAAATATTT GCCCATTGAT AAAATCCTCA
TTTGGATTTA AAAAAGAAAA ATCATGTCCT TACTTTGAAG CTTCTGATGT CGTTCTTGGA
GAAACCACTT GTGACGGAAA GAAAAAAATG TTTGAACATA TGAGCGAAAT GGTCAAACTC
CATGTAATGC AGTTACCGCA CTTTAGGGAC GATAGATCTA AAAAAATGTG GCTCGAAGAA
GTTGAAGACT TAAAAAAATT AATTGAAGAA GAAACTGGAA ATGAAATTAC TGAAGAAAAA
TTAAAAGAAG CTATCGACAA AGTAAACAAC TTAAGAAAGC TGTTCTACAA AATTTACGAA
TTAAGAGCAA ATAATCCTTC CCCCATAAAC GGAAAAGATT CATTAAAATT ATTCCAACTC
GCATACCTCT TAGATATCAA CACGATAGAA TCACTTCTTG AAGAAGTGGT ATCTGAACTT
GAAGAAAGAG TTAAAAAAGG AGAAGGCTAC TCTGGAAAAC GAATTTTAAT TGCAGGCTGT
CCAATGGTTG CAGGAAACAC AAAAATCCCA GAAATCATTG AAGATGCAGG TGCTGTAGTT
GTTGGAGAAG AAAGTTGTAC TGGAACAAGG CAGTTTGAAA ACTACGTTGA CGGATACACG
ATTGAAGCGC TTTCCGACAG GTACTTTAAT ATTTCTTGTG CATGTAAATT CAACAACGAA
GAAAGAATCG ATAGACTCAA AGAACTTGTA AAAGAACAGA AAGCTGATGG TGTTGTTTAC
TACACCCTCC AATACTGCCA CACATTTAAC GTGGAAGGTA CTTTAATTGA AAAAGAGCTC
AAAAAATCAG GCATTCCAAT TATAAGAGTA GAAACCGATT ACTCTGAAAG TGACAAAGAG
CAGTTAAAAA CAAGACTCGA AGCATTTGTA GAAATGATTT AA
|
|---|
| Protein sequence | MEELNSIKKI NEAFTKRKDE LYAQKDEGKK VFGLFCTFVP TELILAADAI PVGLCGGKEA
TIPSAEEILP RNICPLIKSS FGFKKEKSCP YFEASDVVLG ETTCDGKKKM FEHMSEMVKL
HVMQLPHFRD DRSKKMWLEE VEDLKKLIEE ETGNEITEEK LKEAIDKVNN LRKLFYKIYE
LRANNPSPIN GKDSLKLFQL AYLLDINTIE SLLEEVVSEL EERVKKGEGY SGKRILIAGC
PMVAGNTKIP EIIEDAGAVV VGEESCTGTR QFENYVDGYT IEALSDRYFN ISCACKFNNE
ERIDRLKELV KEQKADGVVY YTLQYCHTFN VEGTLIEKEL KKSGIPIIRV ETDYSESDKE
QLKTRLEAFV EMI
|
|---|
| |