93 homologs were found in PanDaTox collection
for query gene Sfum_3256 on replicon NC_008554
Organism: Syntrophobacter fumaroxidans MPOB



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008554  Sfum_3256  2-hydroxyglutaryl-CoA dehydratase, D-component  100 
 
 
423 aa  869    Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_007519  Dde_0090  2-hydroxyglutaryl-CoA dehydratase, beta subunit-like  70.41 
 
 
426 aa  646    Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_013173  Dbac_1927  2-hydroxyglutaryl-CoA dehydratase D-component  74.7 
 
 
425 aa  673    Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.756388  n/a   
 
 
-
 
NC_013216  Dtox_0119  2-hydroxyglutaryl-CoA dehydratase D-component  58.19 
 
 
424 aa  527  1e-148  Desulfotomaculum acetoxidans DSM 771  Bacteria  hitchhiker  0.000350126  normal  0.0170821 
 
 
-
 
NC_013385  Adeg_0387  2-hydroxyglutaryl-CoA dehydratase D-component  60.43 
 
 
426 aa  515  1.0000000000000001e-145  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_009712  Mboo_0863  2-hydroxyglutaryl-CoA dehydratase, D-component  57.68 
 
 
426 aa  514  1e-144  Candidatus Methanoregula boonei 6A8  Archaea  normal  0.0455624  normal 
 
 
-
 
NC_007644  Moth_1418  2-hydroxyglutaryl-CoA dehydratase, D-component  51.07 
 
 
436 aa  466  9.999999999999999e-131  Moorella thermoacetica ATCC 39073  Bacteria  hitchhiker  0.00133287  normal  0.906732 
 
 
-
 
NC_002939  GSU2944  (R)-2-hydroxyglutaryl-CoA dehydratase alpha-subunit, putative  50.84 
 
 
431 aa  458  9.999999999999999e-129  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_008346  Swol_0412  (R)-2-hydroxyglutaryl-CoA dehydratase, beta subunit, putative  50 
 
 
424 aa  455  1e-127  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_0091  2-hydroxyglutaryl-CoA dehydratase D-component  50.36 
 
 
429 aa  439  9.999999999999999e-123  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_013204  Elen_1690  2-hydroxyglutaryl-CoA dehydratase D-component  49.05 
 
 
424 aa  429  1e-119  Eggerthella lenta DSM 2243  Bacteria  normal  0.531982  normal  0.740952 
 
 
-
 
NC_002967  TDE0389  (R)-2-hydroxyglutaryl-CoA dehydratase, beta subunit, putative  47.69 
 
 
412 aa  424  1e-117  Treponema denticola ATCC 35405  Bacteria  normal  n/a   
 
 
-
 
NC_013170  Ccur_11360  Benzoyl-CoA reductase/2-hydroxyglutaryl-CoA dehydratase subunit, BcrC/BadD/HgdB  48.93 
 
 
426 aa  423  1e-117  Cryptobacterium curtum DSM 15641  Bacteria  normal  0.390545  normal  0.8731 
 
 
-
 
NC_013165  Shel_25470  Benzoyl-CoA reductase/2-hydroxyglutaryl-CoA dehydratase subunit, BcrC/BadD/HgdB  48.69 
 
 
425 aa  421  1e-116  Slackia heliotrinireducens DSM 20476  Bacteria  normal  normal 
 
 
-
 
NC_013522  Taci_0254  2-hydroxyglutaryl-CoA dehydratase D-component  47.52 
 
 
423 aa  414  1e-114  Thermanaerovibrio acidaminovorans DSM 6589  Bacteria  normal  n/a   
 
 
-
 
NC_013512  Sdel_2024  2-hydroxyglutaryl-CoA dehydratase D-component  46.68 
 
 
439 aa  413  1e-114  Sulfurospirillum deleyianum DSM 6946  Bacteria  normal  n/a   
 
 
-
 
NC_009975  MmarC6_1821  2-hydroxyglutaryl-CoA dehydratase D-component  45.04 
 
 
373 aa  323  5e-87  Methanococcus maripaludis C6  Archaea  normal  n/a   
 
 
-
 
NC_009135  MmarC5_0834  2-hydroxyglutaryl-CoA dehydratase, D-component  44.5 
 
 
373 aa  320  3e-86  Methanococcus maripaludis C5  Archaea  normal  n/a   
 
 
-
 
NC_009637  MmarC7_0081  2-hydroxyglutaryl-CoA dehydratase D-component  44.77 
 
 
373 aa  319  6e-86  Methanococcus maripaludis C7  Archaea  hitchhiker  0.00790728  hitchhiker  0.00027984 
 
 
-
 
NC_009135  MmarC5_1329  2-hydroxyglutaryl-CoA dehydratase, D-component  44.76 
 
 
373 aa  319  7e-86  Methanococcus maripaludis C5  Archaea  normal  0.360165  n/a   
 
 
-
 
NC_009637  MmarC7_1346  2-hydroxyglutaryl-CoA dehydratase D-component  46.11 
 
 
373 aa  318  2e-85  Methanococcus maripaludis C7  Archaea  normal  0.922776  normal  0.0249494 
 
 
-
 
NC_009975  MmarC6_0607  2-hydroxyglutaryl-CoA dehydratase D-component  44.77 
 
 
373 aa  314  1.9999999999999998e-84  Methanococcus maripaludis C6  Archaea  normal  0.422107  n/a   
 
 
-
 
NC_009634  Mevan_1356  2-hydroxyglutaryl-CoA dehydratase D-component  43.08 
 
 
373 aa  309  6.999999999999999e-83  Methanococcus vannielii SB  Archaea  normal  0.0888918  n/a   
 
 
-
 
NC_009635  Maeo_1346  2-hydroxyglutaryl-CoA dehydratase D-component  42.08 
 
 
372 aa  291  2e-77  Methanococcus aeolicus Nankai-3  Archaea  normal  0.120946  n/a   
 
 
-
 
NC_011830  Dhaf_3912  2-hydroxyglutaryl-CoA dehydratase D-component  40.16 
 
 
384 aa  288  1e-76  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_011832  Mpal_1311  2-hydroxyglutaryl-CoA dehydratase D-component  40.94 
 
 
388 aa  286  5e-76  Methanosphaerula palustris E1-9c  Archaea  normal  0.522959  normal 
 
 
-
 
NC_002939  GSU2519  (R)-2-hydroxyglutaryl-CoA dehydratase beta-subunit, putative  41.92 
 
 
387 aa  285  1.0000000000000001e-75  Geobacter sulfurreducens PCA  Bacteria  normal  0.321633  n/a   
 
 
-
 
NC_007644  Moth_1446  2-hydroxyglutaryl-CoA dehydratase, D-component  40.69 
 
 
381 aa  278  2e-73  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.629308  normal  0.054659 
 
 
-
 
NC_014150  Bmur_0617  2-hydroxyglutaryl-CoA dehydratase D-component  39.12 
 
 
384 aa  276  7e-73  Brachyspira murdochii DSM 12563  Bacteria  normal  n/a   
 
 
-
 
NC_009634  Mevan_1623  2-hydroxyglutaryl-CoA dehydratase D-component  42.53 
 
 
373 aa  273  6e-72  Methanococcus vannielii SB  Archaea  decreased coverage  0.000208392  n/a   
 
 
-
 
NC_011146  Gbem_2040  2-hydroxyglutaryl-CoA dehydratase D-component  39.56 
 
 
401 aa  270  5e-71  Geobacter bemidjiensis Bem  Bacteria  normal  0.921137  n/a   
 
 
-
 
NC_013517  Sterm_1694  2-hydroxyglutaryl-CoA dehydratase D-component  39.13 
 
 
382 aa  268  1e-70  Sebaldella termitidis ATCC 33386  Bacteria  normal  n/a   
 
 
-
 
NC_009801  EcE24377A_4937  putative 2-hydroxyglutaryl-CoA dehydratase, D-component  39.18 
 
 
383 aa  268  1e-70  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_010498  EcSMS35_4882  putative 2-hydroxyglutaryl-CoA dehydratase, D-component  38.9 
 
 
383 aa  266  5.999999999999999e-70  Escherichia coli SMS-3-5  Bacteria  normal  0.30993  normal  0.992487 
 
 
-
 
CP001509  ECD_04204  predicted 2-hydroxyglutaryl-CoA dehydratase  38.3 
 
 
383 aa  266  7e-70  Escherichia coli BL21(DE3)  Bacteria  normal  0.0605066  n/a   
 
 
-
 
CP001637  EcDH1_3660  2-hydroxyglutaryl-CoA dehydratase D-component  38.3 
 
 
383 aa  266  7e-70  Escherichia coli DH1  Bacteria  normal  0.814301  n/a   
 
 
-
 
NC_012892  B21_04167  hypothetical protein  38.3 
 
 
383 aa  266  7e-70  Escherichia coli BL21  Bacteria  normal  0.0394396  n/a   
 
 
-
 
NC_011353  ECH74115_5849  putative 2-hydroxyglutaryl-CoA dehydratase, D-component  38.9 
 
 
383 aa  265  8.999999999999999e-70  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal  0.981774 
 
 
-
 
NC_009800  EcHS_A4563  putative 2-hydroxyglutaryl-CoA dehydratase, D-component  38.63 
 
 
383 aa  265  1e-69  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_010468  EcolC_3728  2-hydroxyglutaryl-CoA dehydratase D-component  38.9 
 
 
383 aa  265  2e-69  Escherichia coli ATCC 8739  Bacteria  normal  normal 
 
 
-
 
NC_011883  Ddes_0545  2-hydroxyglutaryl-CoA dehydratase D-component  37.87 
 
 
379 aa  263  4.999999999999999e-69  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  normal  n/a   
 
 
-
 
NC_008346  Swol_0410  (R)-2-hydroxyglutaryl-CoA dehydratase beta-subunit, putative  38.93 
 
 
378 aa  256  4e-67  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  0.732282  n/a   
 
 
-
 
NC_008554  Sfum_3161  2-hydroxyglutaryl-CoA dehydratase, D-component  37.81 
 
 
382 aa  254  2.0000000000000002e-66  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_009253  Dred_1278  2-hydroxyglutaryl-CoA dehydratase, D-component  35.71 
 
 
385 aa  253  5.000000000000001e-66  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_009715  CCV52592_0873  2-hydroxyglutaryl-CoA dehydratase, D-component  35.15 
 
 
385 aa  252  8.000000000000001e-66  Campylobacter curvus 525.92  Bacteria  normal  n/a   
 
 
-
 
NC_002967  TDE0392  (R)-2-hydroxyglutaryl-CoA dehydratase, beta subunit, putative  36.6 
 
 
392 aa  249  7e-65  Treponema denticola ATCC 35405  Bacteria  normal  n/a   
 
 
-
 
NC_008346  Swol_0427  (R)-2-hydroxyglutaryl-CoA dehydratase, beta subunit, putative  37.43 
 
 
382 aa  246  6.999999999999999e-64  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  n/a   
 
 
-
 
NC_013216  Dtox_1465  2-hydroxyglutaryl-CoA dehydratase D-component  35.52 
 
 
369 aa  244  1.9999999999999999e-63  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  normal 
 
 
-
 
NC_010718  Nther_0828  2-hydroxyglutaryl-CoA dehydratase D-component  36.78 
 
 
393 aa  243  6e-63  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  hitchhiker  0.0000331904 
 
 
-
 
NC_009712  Mboo_0866  2-hydroxyglutaryl-CoA dehydratase, D-component  33.59 
 
 
383 aa  239  5e-62  Candidatus Methanoregula boonei 6A8  Archaea  normal  0.327302  normal 
 
 
-
 
NC_011769  DvMF_0986  2-hydroxyglutaryl-CoA dehydratase D-component  35.83 
 
 
379 aa  239  8e-62  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.345407 
 
 
-
 
NC_009802  CCC13826_1134  UDP-MurNac-pentapeptide presynthetase  32.88 
 
 
385 aa  239  1e-61  Campylobacter concisus 13826  Bacteria  normal  0.207036  n/a   
 
 
-
 
NC_013165  Shel_26180  Benzoyl-CoA reductase/2-hydroxyglutaryl-CoA dehydratase subunit, BcrC/BadD/HgdB  35.03 
 
 
384 aa  237  3e-61  Slackia heliotrinireducens DSM 20476  Bacteria  normal  normal 
 
 
-
 
NC_013165  Shel_25330  Benzoyl-CoA reductase/2-hydroxyglutaryl-CoA dehydratase subunit, BcrC/BadD/HgdB  35.85 
 
 
390 aa  232  7.000000000000001e-60  Slackia heliotrinireducens DSM 20476  Bacteria  normal  normal  0.8257 
 
 
-
 
NC_008751  Dvul_0706  2-hydroxyglutaryl-CoA dehydratase, D-component  35.99 
 
 
380 aa  223  6e-57  Desulfovibrio vulgaris DP4  Bacteria  normal  0.255737  normal  0.505258 
 
 
-
 
NC_008340  Mlg_0785  2-hydroxyglutaryl-CoA dehydratase, D-component  39.39 
 
 
420 aa  220  3e-56  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.237879  normal 
 
 
-
 
NC_013216  Dtox_2825  2-hydroxyglutaryl-CoA dehydratase D-component  33.6 
 
 
368 aa  209  5e-53  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  normal 
 
 
-
 
NC_007575  Suden_0273  2-hydroxyglutaryl-CoA dehydratase, D-component  31.69 
 
 
422 aa  199  7.999999999999999e-50  Sulfurimonas denitrificans DSM 1251  Bacteria  normal  n/a   
 
 
-
 
NC_011832  Mpal_1147  2-hydroxyglutaryl-CoA dehydratase D-component  25.99 
 
 
393 aa  142  8e-33  Methanosphaerula palustris E1-9c  Archaea  normal  0.132933  normal 
 
 
-
 
NC_008609  Ppro_1278  2-hydroxyglutaryl-CoA dehydratase, D-component  30.14 
 
 
413 aa  142  9.999999999999999e-33  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_3877  2-hydroxyglutaryl-CoA dehydratase, D-component  30.83 
 
 
395 aa  141  3e-32  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_011830  Dhaf_1101  2-hydroxyglutaryl-CoA dehydratase D-component  28.46 
 
 
379 aa  131  2.0000000000000002e-29  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_007925  RPC_2055  2-hydroxyglutaryl-CoA dehydratase, D-component  23.82 
 
 
376 aa  100  6e-20  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.574959  normal  0.736744 
 
 
-
 
NC_009943  Dole_2774  2-hydroxyglutaryl-CoA dehydratase D-component  24.1 
 
 
376 aa  97.1  5e-19  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_009943  Dole_2769  2-hydroxyglutaryl-CoA dehydratase D-component  23.61 
 
 
379 aa  94.4  3e-18  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_011830  Dhaf_3454  2-hydroxyglutaryl-CoA dehydratase D-component  25.28 
 
 
386 aa  81.6  0.00000000000002  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_011899  Hore_16080  2-hydroxyglutaryl-CoA dehydratase D-component  24.68 
 
 
426 aa  81.3  0.00000000000003  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_009943  Dole_0891  2-hydroxyglutaryl-CoA dehydratase D-component  22.16 
 
 
373 aa  81.3  0.00000000000003  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_010718  Nther_1772  2-hydroxyglutaryl-CoA dehydratase D-component  23.3 
 
 
358 aa  80.9  0.00000000000004  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  normal  0.39587 
 
 
-
 
NC_011899  Hore_16090  2-hydroxyglutaryl-CoA dehydratase D-component  24.11 
 
 
355 aa  78.6  0.0000000000002  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_009943  Dole_1686  2-hydroxyglutaryl-CoA dehydratase D-component  22.89 
 
 
370 aa  78.2  0.0000000000002  Desulfococcus oleovorans Hxd3  Bacteria  normal  0.0274681  n/a   
 
 
-
 
NC_011661  Dtur_1747  2-hydroxyglutaryl-CoA dehydratase D-component  23.69 
 
 
339 aa  77  0.0000000000006  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_013385  Adeg_1708  2-hydroxyglutaryl-CoA dehydratase D-component  23.96 
 
 
322 aa  70.1  0.00000000007  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_007644  Moth_1007  2-hydroxyglutaryl-CoA dehydratase, D-component  21.86 
 
 
349 aa  68.2  0.0000000002  Moorella thermoacetica ATCC 39073  Bacteria  decreased coverage  0.0000000530359  hitchhiker  0.000167288 
 
 
-
 
NC_011662  Tmz1t_2951  benzoyl-CoA reductase, subunit C  18.78 
 
 
386 aa  65.5  0.000000002  Thauera sp. MZ1T  Bacteria  normal  0.689086  n/a   
 
 
-
 
NC_011832  Mpal_1146  2-hydroxyglutaryl-CoA dehydratase D-component  26.82 
 
 
501 aa  64.7  0.000000003  Methanosphaerula palustris E1-9c  Archaea  normal  0.114062  normal 
 
 
-
 
NC_011004  Rpal_0724  benzoyl-CoA reductase, subunit C  22.79 
 
 
394 aa  64.3  0.000000004  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.377082  n/a   
 
 
-
 
NC_011832  Mpal_1137  2-hydroxyglutaryl-CoA dehydratase D-component  26.82 
 
 
494 aa  63.9  0.000000005  Methanosphaerula palustris E1-9c  Archaea  normal  0.417243  normal 
 
 
-
 
NC_007644  Moth_1006  2-hydroxyglutaryl-CoA dehydratase, D-component  25.65 
 
 
421 aa  63.5  0.000000007  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.0695891  hitchhiker  0.000177823 
 
 
-
 
NC_007925  RPC_1029  benzoyl-CoA reductase, subunit C  21.87 
 
 
394 aa  62  0.00000002  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_007958  RPD_1538  benzoyl-CoA reductase, subunit C  22.62 
 
 
394 aa  58.2  0.0000003  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.130058  normal 
 
 
-
 
NC_010814  Glov_2401  2-hydroxyglutaryl-CoA dehydratase D-component  21.94 
 
 
397 aa  56.6  0.0000007  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_011832  Mpal_1135  2-hydroxyglutaryl-CoA dehydratase D-component  25.61 
 
 
494 aa  55.5  0.000002  Methanosphaerula palustris E1-9c  Archaea  normal  normal  0.207631 
 
 
-
 
NC_009943  Dole_1685  2-hydroxyglutaryl-CoA dehydratase D-component  24.18 
 
 
424 aa  55.1  0.000002  Desulfococcus oleovorans Hxd3  Bacteria  hitchhiker  0.00000455282  n/a   
 
 
-
 
NC_010718  Nther_1771  2-hydroxyglutaryl-CoA dehydratase D-component  22.91 
 
 
419 aa  52.8  0.00001  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  normal  0.433973 
 
 
-
 
NC_012034  Athe_0199  2-hydroxyglutaryl-CoA dehydratase D-component  20.6 
 
 
416 aa  49.7  0.0001  Anaerocellum thermophilum DSM 6725  Bacteria  hitchhiker  0.00000602439  n/a   
 
 
-
 
NC_011661  Dtur_1746  2-hydroxyglutaryl-CoA dehydratase D-component  22.58 
 
 
408 aa  46.6  0.001  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_009012  Cthe_3103  2-hydroxyglutaryl-CoA dehydratase, D-component  37.5 
 
 
328 aa  44.3  0.004  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_013385  Adeg_0480  2-hydroxyglutaryl-CoA dehydratase D-component  24.84 
 
 
326 aa  43.9  0.005  Ammonifex degensii KC4  Bacteria  normal  0.389098  n/a   
 
 
-
 
NC_013552  DhcVS_532  hypothetical protein  25.67 
 
 
336 aa  43.9  0.006  Dehalococcoides sp. VS  Bacteria  hitchhiker  0.00368182  n/a   
 
 
-
 
NC_012034  Athe_0200  CoA-substrate-specific enzyme activase  30.53 
 
 
539 aa  43.5  0.007  Anaerocellum thermophilum DSM 6725  Bacteria  hitchhiker  0.00000427749  n/a   
 
 
-
 
NC_007498  Pcar_2726  benzoyl-CoA reductase/2-hydroxyglutaryl-CoA dehydratase subunit  24.23 
 
 
327 aa  43.5  0.007  Pelobacter carbinolicus DSM 2380  Bacteria  normal  n/a   
 
 
-
 
NC_009455  DehaBAV1_0566  2-hydroxyglutaryl-CoA dehydratase, D-component  25.4 
 
 
339 aa  43.5  0.007  Dehalococcoides sp. BAV1  Bacteria  hitchhiker  0.00128016  n/a   
 
 
-
 
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