| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpal_1311 |
|---|
| Symbol | |
|---|
| ID | 7271171 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanosphaerula palustris E1-9c |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_011832 |
|---|
| Strand | - |
|---|
| Start bp | 1347296 |
|---|
| End bp | 1348462 |
|---|
| Gene Length | 1167 bp |
|---|
| Protein Length | 388 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 643569944 |
|---|
| Product | 2-hydroxyglutaryl-CoA dehydratase D-component |
|---|
| Protein accession | YP_002466367 |
|---|
| Protein GI | 219851935 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1775] Benzoyl-CoA reductase/2-hydroxyglutaryl-CoA dehydratase subunit, BcrC/BadD/HgdB |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.522959 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTTTCGT CAGCATCAGA TCCGGATCGC TTCACTGATG CGTATCCGGC CCGCATCACC
GCCCTCACCA GGGAGAGGAA GGCCGGGACG AAGATCGTCG GAACGTTCTG CCTGTATGTC
CCCGACGAGA TCATCTATGC TGCAGGCGCC GATCGGATGA TCCTCTGTGG CGGCAGCAAT
GCCCTCATCC CAGCGGCAGA TGAATTTCTC CCTCGCTCCC TCTGCCCGCT GATCAGGTCC
TCGTTCGGAT CCATCATCAC CAGGGATGAC CCCCAAACAG CGGCCTGCCC GCACGTCGCC
CTCATCGATC TGGTGATCGG AGAGACGACC TGCGACGGCA AGAAGAAGAT GTTCGAACTG
CTGGCCGACC TGGTACCAAC TCATATGATC GACCTGCCCC AGAAGCCCGA CACCCCGGGG
GCCCTCCTCT ACTTCACCAG CGAACTGCAG AAATTCCGCA GGGTGATGGA GGAACTGACC
GGCAACCAGG TGACGGATGA AGCATTGTGG AGGGAGATCC GGAATGCCAA CCGAACACGA
CGCCTGCTGA TGCGCCTCTT TACCCTCCGC CAGCAGAATC CCCCACCGAT AGGGGGAGTG
GCAGTGATCC GGATGATGCA GCGACAGTTT CAACTCCATC CTACGGAGTT CAGACGCCGG
CTTGAAACCC TCGTCACCAG GCTGGAGGCG CTGCAGGGGA CCAATCAGGA GAGGACGGTG
AAACGACCCA GGATCCTCTT CTCGGGCTGT CCGGTGACCG CAGGGAACCA GAAAGTACCT
GAGATCGTTG AGGAACGGGG CGGGGTGATC GTCGTTGAGG AGAGCTGTAC CGGGACCCGG
GCGTTCTGGC ACCTGGTCGA TGAGAACGAG GAGCGAGATC CACTGGTGGC GCTGGCCGAA
CGCTACCTGC AGATCCCCTG CGCCTGCATG ACCCCCAATG ACAGACGGAT CGAGCATATC
CTCGACCTCG TCCGGCAGTA CTCGGTTGAC GGGGTGGTCT ATGCCACGCT CCAGAACTGC
CAGGGGTACA ACACCGAACG GCACCGGGTG CAGCAGGCCC TCAAAGAGGT GGGAGTGCCG
ATGCTCGCCA TCGAGACAGA CTATGGAGAC GCAGATAAGG AGCAGATCGG GGTCAGAGTG
GAAGCATTTC TGGAGATGAT CCAGTGA
|
|---|
| Protein sequence | MLSSASDPDR FTDAYPARIT ALTRERKAGT KIVGTFCLYV PDEIIYAAGA DRMILCGGSN
ALIPAADEFL PRSLCPLIRS SFGSIITRDD PQTAACPHVA LIDLVIGETT CDGKKKMFEL
LADLVPTHMI DLPQKPDTPG ALLYFTSELQ KFRRVMEELT GNQVTDEALW REIRNANRTR
RLLMRLFTLR QQNPPPIGGV AVIRMMQRQF QLHPTEFRRR LETLVTRLEA LQGTNQERTV
KRPRILFSGC PVTAGNQKVP EIVEERGGVI VVEESCTGTR AFWHLVDENE ERDPLVALAE
RYLQIPCACM TPNDRRIEHI LDLVRQYSVD GVVYATLQNC QGYNTERHRV QQALKEVGVP
MLAIETDYGD ADKEQIGVRV EAFLEMIQ
|
|---|
| |