| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | DvMF_0986 |
|---|
| Symbol | |
|---|
| ID | 7172881 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfovibrio vulgaris str. 'Miyazaki F' |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011769 |
|---|
| Strand | - |
|---|
| Start bp | 1197455 |
|---|
| End bp | 1198594 |
|---|
| Gene Length | 1140 bp |
|---|
| Protein Length | 379 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 643539492 |
|---|
| Product | 2-hydroxyglutaryl-CoA dehydratase D-component |
|---|
| Protein accession | YP_002435409 |
|---|
| Protein GI | 218886088 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1775] Benzoyl-CoA reductase/2-hydroxyglutaryl-CoA dehydratase subunit, BcrC/BadD/HgdB |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 71 |
|---|
| Fosmid unclonability p-value | 0.345407 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGTGGG AGAGCATCGA GCGGCTGAAG ACGGCGGCGG AACGCAATGC CCTGGCCATC
AGCGAGGTCA AGGCGGCGGG CCGCAAGGTG GTGGGTCTGT ACTGTCTGTA CTCGCCGGCG
GAAATCGCGC TGGCGGCGGG CGCGGTGCCG GTGGTGCTGT GCGGCACCCG CAACGACCCC
ATTGCCACGG CCGAGCAGGT GCTGCCGCGC AACCTGTGCC CGCTCATCAA GAGCAGCTTC
GGGTTTGCCA TGGAAGGTTC GTGCCCGTAC CTGTCTGCGG CGGATCTGGT GGTGGCGGAC
ACCACCTGCG ACGGCAAGAA GAAGATGTTC GAACTGCTGG GCGAGATGAA GCCCGTGCAC
CTCTTGCACC TGCCGTCCAC GCCGGGCGAC GAGGCCTTGC CCTTCTGGCG CGAGCAGTTG
TCGGGACTGG TGAAGCGGGT GGAAAGCGAC TTCGGGGTGA CCATCACCGA CCAGAACCTG
ACCGACGCCA TCAAGCTGGC CAACCGCGAG CGCCGCGCGC TGAAGGCGCT GATGGACCTG
CCGCAGATGG AACCGGCCCC GGTGACCGGC ATGCAGATGC TGGAGATGCT CTTCAAGCTG
GGCTTCTTCC CGGACCGCGA AACCATCATC GAACTGGCCG AAGGCGTGGT GAACGAGGTG
CAGGCGGCGG CCAAGGCCGG AAGCCTGCCT GAGCGCAAGG GCGGCCCGCG CATCCTGCTG
ACCGGCGTGC CGGTGGGCAT GGGGTCGCAC AAGGTGGTGC GGCTCATCGA GGAATGCGGC
GGCCAGGTGG TGTGCATGGA AAACTGCACC GGCTACAAGA AGGCCGACCT GGTGGCCGAG
ACGGGCGACC CGCTCACCGC GCTGGCCCGC CGCTACCTGT CCACGCCGTG CTCGGTCATG
GCGCCCAACC AGGGCCGCTT CGACCTGCTG GAACAACTGG TGGCCGACTT CCGGCCGCAC
GGCGTGGTGG ACCTGACCTG GCAGGCCTGC CATACCTACA ACGTGGAGGC GTACAAGGTG
CGCAACTTCC TGCGCGACAA GTTCGACCTG CCCAGCCTGC ACATCGAGAC GGACTACTCC
GAGGCCGATG CCGAACAGCT CAAGGTGCGG ATTGAGGCAT TCCTGGAAAT GATCGGCTAG
|
|---|
| Protein sequence | MTWESIERLK TAAERNALAI SEVKAAGRKV VGLYCLYSPA EIALAAGAVP VVLCGTRNDP
IATAEQVLPR NLCPLIKSSF GFAMEGSCPY LSAADLVVAD TTCDGKKKMF ELLGEMKPVH
LLHLPSTPGD EALPFWREQL SGLVKRVESD FGVTITDQNL TDAIKLANRE RRALKALMDL
PQMEPAPVTG MQMLEMLFKL GFFPDRETII ELAEGVVNEV QAAAKAGSLP ERKGGPRILL
TGVPVGMGSH KVVRLIEECG GQVVCMENCT GYKKADLVAE TGDPLTALAR RYLSTPCSVM
APNQGRFDLL EQLVADFRPH GVVDLTWQAC HTYNVEAYKV RNFLRDKFDL PSLHIETDYS
EADAEQLKVR IEAFLEMIG
|
|---|
| |