| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpal_1147 |
|---|
| Symbol | |
|---|
| ID | 7270411 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanosphaerula palustris E1-9c |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_011832 |
|---|
| Strand | - |
|---|
| Start bp | 1177120 |
|---|
| End bp | 1178301 |
|---|
| Gene Length | 1182 bp |
|---|
| Protein Length | 393 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 643569780 |
|---|
| Product | 2-hydroxyglutaryl-CoA dehydratase D-component |
|---|
| Protein accession | YP_002466213 |
|---|
| Protein GI | 219851781 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1775] Benzoyl-CoA reductase/2-hydroxyglutaryl-CoA dehydratase subunit, BcrC/BadD/HgdB |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.132933 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGCTTG AAACCATAAC GGCTATCCAG GATGCCGTAA ATAGACGCCC GGCAGAACTG
GCAGAGGCAC GAAAAAATGG GTCGAAGGTC GTGGGGTATC TCTGTTGCTA TATCCCTGAA
GAGATTGTTC ATGCTCTCGA TCTCATTCCA GTCCGGCTTG GTATTGGAGG AAATGAGCGA
CTTGTCGAAC TCGGTGGCCA TTATATCTCC ACCCAGAACT GTGTGTTCGT ACGGGAGACA
TTGGGAATGT TCCTTGAAAA GGAAAACCCC TATGTCAACA ACTCTGACGT CGTTGCGATA
TCCACATCAT GCATGCAGAT GTTCCGGGCA GCAGAGTTGC TCAAGTACTA CGCCAAGACA
GACACGATCG TCCTGGGGGT TCCAAGGAAC TTCTACACTG ATGAAGGGAG GACCTATTTC
AGAAATGAAG TCAGGTGGTT TGCCGAGAAA CTGGAGAAAC TCGCAGGGAA GAACCTGGAT
CCAGAGAGAC TCACACAGTC CATAGAACTC TTTAAGTCGA TCAGGCAAAA GATCGGGGAG
ATCTATACCA TCCAGGCCAA GGAAAATTCT CCTATCACCT GGCGTGAGGT TTCTGATGTC
ATCCAGGCAG GATATTATCT CGACAGGGAT CAGTATCTCA CCTATCTCGA CCAGCTCCTT
GCTGAAATCG ACCTGAAGTT CAAGGAATTA CAGGCAGATC CAAAACCTGA CGACAGACCC
CGCATCATCA TCTCTGGAAG TCCAATTCCC CCTGGCGATA ACAAGATCAT CAACCTGATC
GAAGAGATGG GCGGCAGGAT TGTTGCAGAC GATCTCTGCT TCGGTCTTCG ACCCTACCTC
GACATTGATG TGAAGGATGC AACAACTCAG GGTATTGCAG ATGCCTATCT CGACAAAGTG
CCCTGCGCAT CCTTGCCCTA CCTCAAGGAA CTGGAAACGG ATCGGCGTCT TGCGAACCTC
TCAAATCTCG TGGAGCAGTT CCAACCGGAT GGCATGATCT ATCATACGCT CAGGTTCTGT
GACGCATTCA CGTTCAAGGG AAACGAAACA AAGACATTCC TGAAAATTCC CTTCATGGAA
CTTCACACCG AATACGCTGG ATCTGATATT GAAGGAGTCC GTACGCGGGT TGAGGCGTTC
CTTGAAATGA TACGGGATGA ACGGAGCCGG AGGTTCGATT AA
|
|---|
| Protein sequence | MTLETITAIQ DAVNRRPAEL AEARKNGSKV VGYLCCYIPE EIVHALDLIP VRLGIGGNER
LVELGGHYIS TQNCVFVRET LGMFLEKENP YVNNSDVVAI STSCMQMFRA AELLKYYAKT
DTIVLGVPRN FYTDEGRTYF RNEVRWFAEK LEKLAGKNLD PERLTQSIEL FKSIRQKIGE
IYTIQAKENS PITWREVSDV IQAGYYLDRD QYLTYLDQLL AEIDLKFKEL QADPKPDDRP
RIIISGSPIP PGDNKIINLI EEMGGRIVAD DLCFGLRPYL DIDVKDATTQ GIADAYLDKV
PCASLPYLKE LETDRRLANL SNLVEQFQPD GMIYHTLRFC DAFTFKGNET KTFLKIPFME
LHTEYAGSDI EGVRTRVEAF LEMIRDERSR RFD
|
|---|
| |