| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mboo_0866 |
|---|
| Symbol | |
|---|
| ID | 5410579 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Candidatus Methanoregula boonei 6A8 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009712 |
|---|
| Strand | + |
|---|
| Start bp | 843978 |
|---|
| End bp | 845129 |
|---|
| Gene Length | 1152 bp |
|---|
| Protein Length | 383 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 640868092 |
|---|
| Product | 2-hydroxyglutaryl-CoA dehydratase, D-component |
|---|
| Protein accession | YP_001404027 |
|---|
| Protein GI | 154150409 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1775] Benzoyl-CoA reductase/2-hydroxyglutaryl-CoA dehydratase subunit, BcrC/BadD/HgdB |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.327302 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 42 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGAGCAG AAAAGATGAA TTACTTTGAT TCGGTGATCC CGAATGCATC GGCGGCGATA
AAAAGCGTAC GCGAACAGGG AAAGAAGTTC GTGGGGTTCT ACTGTATTTT TGCCCCGCAG
GAACTCATCG TTGCCGCAGA TGCGGTACCG GTGACTCTTT GTTCCACCAA AGAAGAGCCC
ATTGCCGACG GCGAGAAATA TCTCCCGCGG AATTTCTGCC CGCTCCTTAA ATCCTCCTAC
GGGTTTGCCA TCACCGGGAA ATGTGCGTTT TTTAACAACG CGGAATTTAT CATCGGCGAG
ACCACCTGCG ATGGCAAGAA AAAGATGTTT GAGATGATGG GCGCCTTCAA ACCGCTGGTT
GTGCTCGAAC TCCCGCAGAG TGCAAAAGGA GAGATCCAGC AACAGTACTG GCGCTCGGAA
GTGGCCCGGT GCAAAGAGGA GATCGAAAAG CGCCTCCATG TCACCATCAC AGACGAAAAG
ATGAGGGCTG CAATCAGCGA CATGAACGAG CAGCGGGGCC TGATGCGGGA GCTCGCCCTC
CTAAACACAG CGGTTCCCGC GCCTCTTGCC GCCACAGACA TGCTCAAAGT GATGTGGGCC
CGCAACTTCA CCTTTGACCG CCCCACCTTC AATAAGCAAT TAAAAAGTCT CATTGCCGAA
CTTAAGGGCA TGGCCGCAAA AGGCGAAGGT CCTGCGCCAA AGACCGCAAA GCGGATCATC
GTTACCGGTG TTCCCACGGG TGTCGGCTCC GAGAAGGTCA TCCGGATTCT TGAGGAATCG
GGCGCTGCAG TTGTGTATAT CGAGAACTGT GCCGGCATGA AACAGTACCT GGACGATGTT
TCCACACGCG GGTCGCCCCT CGAAGCAATT GCCGACAAGT ACCTCGCCAC TCCCTGCTCC
TGCATGAGCC CGAACACCGG CCGGCTCGAA CTTCTGGAAA AGCTCGTACC TGAGTACCAT
GCAGATGGCG TTGTGGATAT CACCTGGACC GGCTGCCACA CCTACAACGT CGAGTCCCGG
ATTCTCGGGG ACTATCTTTC CCTTCACGGG AATGTCCCGT TCATCCAGAT CGAGACCGAT
TATTCGCAGG GCGATATCGG GCAGATCAGG ACCCGGATCG AGGCATTCCT CGAAATGATT
GCAAAGAAAT AA
|
|---|
| Protein sequence | MRAEKMNYFD SVIPNASAAI KSVREQGKKF VGFYCIFAPQ ELIVAADAVP VTLCSTKEEP
IADGEKYLPR NFCPLLKSSY GFAITGKCAF FNNAEFIIGE TTCDGKKKMF EMMGAFKPLV
VLELPQSAKG EIQQQYWRSE VARCKEEIEK RLHVTITDEK MRAAISDMNE QRGLMRELAL
LNTAVPAPLA ATDMLKVMWA RNFTFDRPTF NKQLKSLIAE LKGMAAKGEG PAPKTAKRII
VTGVPTGVGS EKVIRILEES GAAVVYIENC AGMKQYLDDV STRGSPLEAI ADKYLATPCS
CMSPNTGRLE LLEKLVPEYH ADGVVDITWT GCHTYNVESR ILGDYLSLHG NVPFIQIETD
YSQGDIGQIR TRIEAFLEMI AKK
|
|---|
| |