More than 300 homologs were found in PanDaTox collection
for query gene Gobs_2079 on replicon NC_013757
Organism: Geodermatophilus obscurus DSM 43160



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013757  Gobs_2079  short-chain dehydrogenase/reductase SDR  100 
 
 
253 aa  465  9.999999999999999e-131  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.435336  n/a   
 
 
-
 
NC_009380  Strop_3070  short-chain dehydrogenase/reductase SDR  58.57 
 
 
254 aa  252  4.0000000000000004e-66  Salinispora tropica CNB-440  Bacteria  normal  0.962948  normal  0.131558 
 
 
-
 
NC_009953  Sare_3297  short-chain dehydrogenase/reductase SDR  58.17 
 
 
253 aa  245  4.9999999999999997e-64  Salinispora arenicola CNS-205  Bacteria  normal  hitchhiker  0.000354255 
 
 
-
 
NC_013595  Sros_3658  short-chain dehydrogenase/reductase SDR  53.36 
 
 
250 aa  226  3e-58  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_009664  Krad_2908  short-chain dehydrogenase/reductase SDR  47.04 
 
 
264 aa  185  5e-46  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.933978  normal 
 
 
-
 
NC_008148  Rxyl_2415  short-chain dehydrogenase/reductase SDR  45.06 
 
 
255 aa  175  6e-43  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.0149136  n/a   
 
 
-
 
NC_009674  Bcer98_1545  short-chain dehydrogenase/reductase SDR  34.87 
 
 
261 aa  154  1e-36  Bacillus cytotoxicus NVH 391-98  Bacteria  hitchhiker  0.00435006  n/a   
 
 
-
 
NC_013411  GYMC61_1799  short-chain dehydrogenase/reductase SDR  37.07 
 
 
261 aa  154  1e-36  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_007413  Ava_0311  Short-chain dehydrogenase/reductase SDR  39.3 
 
 
262 aa  153  2.9999999999999998e-36  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_013757  Gobs_3777  short-chain dehydrogenase/reductase SDR  42.91 
 
 
262 aa  153  2.9999999999999998e-36  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_013158  Huta_1623  short-chain dehydrogenase/reductase SDR  38.93 
 
 
261 aa  153  2.9999999999999998e-36  Halorhabdus utahensis DSM 12940  Archaea  normal  n/a   
 
 
-
 
NC_013525  Tter_0758  short-chain dehydrogenase/reductase SDR  37.02 
 
 
262 aa  151  1e-35  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_012793  GWCH70_0923  short-chain dehydrogenase/reductase SDR  35.14 
 
 
261 aa  149  5e-35  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_012029  Hlac_2582  short-chain dehydrogenase/reductase SDR  37.07 
 
 
262 aa  143  3e-33  Halorubrum lacusprofundi ATCC 49239  Archaea  normal  normal 
 
 
-
 
NC_013501  Rmar_2036  short-chain dehydrogenase/reductase SDR  38.76 
 
 
258 aa  140  1.9999999999999998e-32  Rhodothermus marinus DSM 4252  Bacteria  normal  n/a   
 
 
-
 
NC_009073  Pcal_0013  short-chain dehydrogenase/reductase SDR  34.77 
 
 
260 aa  139  6e-32  Pyrobaculum calidifontis JCM 11548  Archaea  n/a    normal 
 
 
-
 
NC_009636  Smed_3570  short-chain dehydrogenase/reductase SDR  40.84 
 
 
259 aa  138  7.999999999999999e-32  Sinorhizobium medicae WSM419  Bacteria  normal  hitchhiker  0.00199675 
 
 
-
 
NC_009440  Msed_2072  short-chain dehydrogenase/reductase SDR  33.46 
 
 
259 aa  137  1e-31  Metallosphaera sedula DSM 5348  Archaea  normal  normal 
 
 
-
 
NC_013501  Rmar_0816  short-chain dehydrogenase/reductase SDR  38.72 
 
 
271 aa  137  2e-31  Rhodothermus marinus DSM 4252  Bacteria  normal  n/a   
 
 
-
 
NC_010525  Tneu_0044  short-chain dehydrogenase/reductase SDR  34.38 
 
 
259 aa  135  8e-31  Thermoproteus neutrophilus V24Sta  Archaea  normal  normal  0.0333473 
 
 
-
 
NC_013922  Nmag_1392  short-chain dehydrogenase/reductase SDR  37.4 
 
 
261 aa  134  9.999999999999999e-31  Natrialba magadii ATCC 43099  Archaea  normal  n/a   
 
 
-
 
NC_007413  Ava_4328  Short-chain dehydrogenase/reductase SDR  33.08 
 
 
294 aa  134  9.999999999999999e-31  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_013922  Nmag_0825  short-chain dehydrogenase/reductase SDR  36.29 
 
 
262 aa  134  9.999999999999999e-31  Natrialba magadii ATCC 43099  Archaea  normal  n/a   
 
 
-
 
NC_008554  Sfum_0112  short-chain dehydrogenase/reductase SDR  35.77 
 
 
263 aa  134  9.999999999999999e-31  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_008781  Pnap_3235  short-chain dehydrogenase/reductase SDR  36.98 
 
 
264 aa  134  1.9999999999999998e-30  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal 
 
 
-
 
NC_013743  Htur_3260  short-chain dehydrogenase/reductase SDR  35.5 
 
 
261 aa  133  3e-30  Haloterrigena turkmenica DSM 5511  Archaea  n/a    n/a   
 
 
-
 
CP001800  Ssol_0092  short-chain dehydrogenase/reductase SDR  33.46 
 
 
261 aa  132  5e-30  Sulfolobus solfataricus 98/2  Archaea  normal  0.658304  n/a   
 
 
-
 
NC_013235  Namu_3844  short-chain dehydrogenase/reductase SDR  43.13 
 
 
257 aa  132  6e-30  Nakamurella multipartita DSM 44233  Bacteria  normal  0.0315057  normal  0.582541 
 
 
-
 
NC_012856  Rpic12D_1983  short-chain dehydrogenase/reductase SDR  37.93 
 
 
263 aa  132  7.999999999999999e-30  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_008701  Pisl_1089  short-chain dehydrogenase/reductase SDR  33.98 
 
 
260 aa  131  1.0000000000000001e-29  Pyrobaculum islandicum DSM 4184  Archaea  normal  normal 
 
 
-
 
NC_007347  Reut_A2505  Short-chain dehydrogenase/reductase SDR  36.92 
 
 
262 aa  130  2.0000000000000002e-29  Ralstonia eutropha JMP134  Bacteria  normal  0.80685  n/a   
 
 
-
 
NC_011761  AFE_2225  glucose 1-dehydrogenase, putative  37.93 
 
 
261 aa  130  2.0000000000000002e-29  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  n/a   
 
 
-
 
NC_011831  Cagg_1481  short-chain dehydrogenase/reductase SDR  35.89 
 
 
253 aa  130  2.0000000000000002e-29  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.196322  normal  0.805943 
 
 
-
 
NC_011206  Lferr_1879  short-chain dehydrogenase/reductase SDR  37.93 
 
 
261 aa  130  2.0000000000000002e-29  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  normal  0.828765 
 
 
-
 
NC_010682  Rpic_2383  short-chain dehydrogenase/reductase SDR  37.55 
 
 
263 aa  130  2.0000000000000002e-29  Ralstonia pickettii 12J  Bacteria  normal  0.378112  normal 
 
 
-
 
NC_013202  Hmuk_1023  short-chain dehydrogenase/reductase SDR  38.11 
 
 
260 aa  130  3e-29  Halomicrobium mukohataei DSM 12286  Archaea  normal  normal  0.24583 
 
 
-
 
NC_010511  M446_5987  short-chain dehydrogenase/reductase SDR  40.08 
 
 
260 aa  129  3e-29  Methylobacterium sp. 4-46  Bacteria  normal  0.389039  normal  0.0700115 
 
 
-
 
NC_007948  Bpro_3876  short-chain dehydrogenase/reductase SDR  37.74 
 
 
264 aa  128  8.000000000000001e-29  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_003295  RSc2186  dehydrogenase/reductase oxidoreductase protein  38.22 
 
 
263 aa  128  9.000000000000001e-29  Ralstonia solanacearum GMI1000  Bacteria  normal  0.158551  normal 
 
 
-
 
NC_014212  Mesil_0968  short-chain dehydrogenase/reductase SDR  38.31 
 
 
261 aa  128  1.0000000000000001e-28  Meiothermus silvanus DSM 9946  Bacteria  normal  normal  0.274647 
 
 
-
 
NC_010622  Bphy_2062  short-chain dehydrogenase/reductase SDR  35.66 
 
 
259 aa  127  1.0000000000000001e-28  Burkholderia phymatum STM815  Bacteria  normal  0.861645  normal  0.226141 
 
 
-
 
NC_010084  Bmul_0986  short-chain dehydrogenase/reductase SDR  35.52 
 
 
278 aa  127  2.0000000000000002e-28  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_007651  BTH_I1017  short chain dehydrogenase/reductase family oxidoreductase  36.68 
 
 
325 aa  127  2.0000000000000002e-28  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_010483  TRQ2_1646  short-chain dehydrogenase/reductase SDR  35.16 
 
 
237 aa  127  2.0000000000000002e-28  Thermotoga sp. RQ2  Bacteria  normal  n/a   
 
 
-
 
NC_008752  Aave_1080  short-chain dehydrogenase/reductase SDR  34.55 
 
 
276 aa  127  2.0000000000000002e-28  Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_011989  Avi_1391  NAD/NADP dependent oxidoreductase  36.29 
 
 
261 aa  126  3e-28  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_011992  Dtpsy_2744  short-chain dehydrogenase/reductase SDR  35.16 
 
 
276 aa  126  3e-28  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_010551  BamMC406_2208  short-chain dehydrogenase/reductase SDR  36.68 
 
 
259 aa  126  3e-28  Burkholderia ambifaria MC40-6  Bacteria  normal  0.336154  normal  0.942948 
 
 
-
 
NC_008390  Bamb_2330  short-chain dehydrogenase/reductase SDR  36.68 
 
 
259 aa  126  3e-28  Burkholderia ambifaria AMMD  Bacteria  normal  n/a   
 
 
-
 
NC_013510  Tcur_3385  short-chain dehydrogenase/reductase SDR  38.8 
 
 
248 aa  126  3e-28  Thermomonospora curvata DSM 43183  Bacteria  normal  0.0734499  n/a   
 
 
-
 
NC_013132  Cpin_1462  short-chain dehydrogenase/reductase SDR  33.72 
 
 
261 aa  126  4.0000000000000003e-28  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_009954  Cmaq_0839  short-chain dehydrogenase/reductase SDR  33.58 
 
 
263 aa  125  6e-28  Caldivirga maquilingensis IC-167  Archaea  normal  0.544381  normal 
 
 
-
 
NC_011206  Lferr_1535  short-chain dehydrogenase/reductase SDR  37.74 
 
 
261 aa  125  6e-28  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  0.0579067  normal  0.028281 
 
 
-
 
NC_011761  AFE_1857  glucose 1-dehydrogenase, putative  37.74 
 
 
261 aa  125  6e-28  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  0.637675  n/a   
 
 
-
 
NC_010508  Bcenmc03_2315  short-chain dehydrogenase/reductase SDR  35.91 
 
 
259 aa  125  8.000000000000001e-28  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal  0.400056 
 
 
-
 
NC_007951  Bxe_A3257  putative 3-oxoacyl-acyl carrier protein reductase  34.23 
 
 
259 aa  125  9e-28  Burkholderia xenovorans LB400  Bacteria  normal  0.0566153  normal  0.418945 
 
 
-
 
NC_011071  Smal_3830  short-chain dehydrogenase/reductase SDR  36.15 
 
 
259 aa  124  1e-27  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal 
 
 
-
 
NC_012850  Rleg_1090  short-chain dehydrogenase/reductase SDR  35.85 
 
 
262 aa  124  1e-27  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.538623 
 
 
-
 
NC_007510  Bcep18194_A5619  Short-chain dehydrogenase/reductase SDR  35.11 
 
 
277 aa  123  2e-27  Burkholderia sp. 383  Bacteria  normal  0.0753007  normal 
 
 
-
 
NC_008060  Bcen_1680  short-chain dehydrogenase/reductase SDR  35.52 
 
 
285 aa  124  2e-27  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.0641216  n/a   
 
 
-
 
NC_008542  Bcen2424_2292  short-chain dehydrogenase/reductase SDR  35.52 
 
 
259 aa  124  2e-27  Burkholderia cenocepacia HI2424  Bacteria  normal  n/a   
 
 
-
 
NC_007802  Jann_2277  short-chain dehydrogenase/reductase SDR  35.23 
 
 
259 aa  123  3e-27  Jannaschia sp. CCS1  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_7299  short-chain dehydrogenase/reductase SDR  39.16 
 
 
260 aa  123  3e-27  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_006348  BMA1882  short chain dehydrogenase/reductase family oxidoreductase  36.68 
 
 
259 aa  122  4e-27  Burkholderia mallei ATCC 23344  Bacteria  normal  0.0800306  n/a   
 
 
-
 
NC_009076  BURPS1106A_1243  short chain dehydrogenase/reductase family oxidoreductase  36.68 
 
 
259 aa  122  4e-27  Burkholderia pseudomallei 1106a  Bacteria  decreased coverage  0.00809972  n/a   
 
 
-
 
NC_009074  BURPS668_1234  short chain dehydrogenase/reductase family oxidoreductase  36.68 
 
 
259 aa  122  4e-27  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_008698  Tpen_1821  short chain dehydrogenase  34.1 
 
 
264 aa  122  4e-27  Thermofilum pendens Hrk 5  Archaea  normal  0.174023  n/a   
 
 
-
 
NC_009080  BMA10247_0361  short chain dehydrogenase/reductase family oxidoreductase  36.68 
 
 
259 aa  122  4e-27  Burkholderia mallei NCTC 10247  Bacteria  normal  0.0730868  n/a   
 
 
-
 
NC_008785  BMASAVP1_A1078  short chain dehydrogenase/reductase family oxidoreductase  36.68 
 
 
259 aa  122  4e-27  Burkholderia mallei SAVP1  Bacteria  normal  0.296983  n/a   
 
 
-
 
NC_008836  BMA10229_A0789  short chain dehydrogenase/reductase family oxidoreductase  36.68 
 
 
259 aa  122  4e-27  Burkholderia mallei NCTC 10229  Bacteria  normal  0.0355352  n/a   
 
 
-
 
NC_010681  Bphyt_1303  short-chain dehydrogenase/reductase SDR  34.23 
 
 
259 aa  122  5e-27  Burkholderia phytofirmans PsJN  Bacteria  normal  0.154867  normal  0.0871554 
 
 
-
 
NC_007434  BURPS1710b_1388  short chain dehydrogenase/reductase family oxidoreductase  36.68 
 
 
259 aa  122  6e-27  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_009379  Pnuc_1069  short-chain dehydrogenase/reductase SDR  34.1 
 
 
261 aa  122  6e-27  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  0.199007  n/a   
 
 
-
 
NC_007777  Francci3_1239  short-chain dehydrogenase/reductase SDR  37.65 
 
 
259 aa  121  9e-27  Frankia sp. CcI3  Bacteria  normal  normal  0.198291 
 
 
-
 
NC_009376  Pars_0047  short-chain dehydrogenase/reductase SDR  32.68 
 
 
260 aa  121  9.999999999999999e-27  Pyrobaculum arsenaticum DSM 13514  Archaea  normal  normal 
 
 
-
 
NC_008009  Acid345_1606  short-chain dehydrogenase/reductase SDR  33.74 
 
 
231 aa  119  3e-26  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal 
 
 
-
 
NC_009436  Ent638_1510  short chain dehydrogenase  35.92 
 
 
249 aa  119  3e-26  Enterobacter sp. 638  Bacteria  normal  normal  0.360234 
 
 
-
 
NC_013922  Nmag_0936  short-chain dehydrogenase/reductase SDR  34.85 
 
 
234 aa  119  3.9999999999999996e-26  Natrialba magadii ATCC 43099  Archaea  normal  0.590159  n/a   
 
 
-
 
NC_013132  Cpin_4563  short-chain dehydrogenase/reductase SDR  35.94 
 
 
250 aa  118  7e-26  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.332785  normal  0.123242 
 
 
-
 
NC_009952  Dshi_1339  short-chain dehydrogenase/reductase SDR  36.23 
 
 
259 aa  118  7e-26  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal  0.0406347 
 
 
-
 
NC_010524  Lcho_1226  short-chain dehydrogenase/reductase SDR  35.23 
 
 
263 aa  119  7e-26  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_014210  Ndas_2918  short-chain dehydrogenase/reductase SDR  37.25 
 
 
251 aa  118  7e-26  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal  0.154844 
 
 
-
 
NC_009512  Pput_3177  short-chain dehydrogenase/reductase SDR  35.88 
 
 
258 aa  118  9e-26  Pseudomonas putida F1  Bacteria  normal  normal  0.567568 
 
 
-
 
NC_007802  Jann_1207  short-chain dehydrogenase/reductase SDR  35.5 
 
 
259 aa  117  9.999999999999999e-26  Jannaschia sp. CCS1  Bacteria  normal  normal 
 
 
-
 
NC_008254  Meso_1054  short-chain dehydrogenase/reductase SDR  35.96 
 
 
260 aa  118  9.999999999999999e-26  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_012791  Vapar_1256  short-chain dehydrogenase/reductase SDR  35.47 
 
 
264 aa  118  9.999999999999999e-26  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_013235  Namu_2475  3-ketoacyl-(acyl-carrier-protein) reductase  38.96 
 
 
258 aa  118  9.999999999999999e-26  Nakamurella multipartita DSM 44233  Bacteria  hitchhiker  0.00000418459  decreased coverage  0.00157029 
 
 
-
 
NC_007908  Rfer_3195  short-chain dehydrogenase/reductase SDR  34.34 
 
 
264 aa  117  1.9999999999999998e-25  Rhodoferax ferrireducens T118  Bacteria  normal  0.857266  n/a   
 
 
-
 
NC_014230  CA2559_07435  putative short-chain dehydrogenase/reductase  32.06 
 
 
269 aa  117  1.9999999999999998e-25  Croceibacter atlanticus HTCC2559  Bacteria  normal  0.492431  n/a   
 
 
-
 
NC_009719  Plav_0130  short-chain dehydrogenase/reductase SDR  32.05 
 
 
259 aa  116  3.9999999999999997e-25  Parvibaculum lavamentivorans DS-1  Bacteria  hitchhiker  0.0000437524  normal 
 
 
-
 
NC_009486  Tpet_1580  short-chain dehydrogenase/reductase SDR  32.16 
 
 
237 aa  116  3.9999999999999997e-25  Thermotoga petrophila RKU-1  Bacteria  normal  n/a   
 
 
-
 
NC_002947  PP_2540  short chain dehydrogenase/reductase family oxidoreductase  35.11 
 
 
258 aa  115  5e-25  Pseudomonas putida KT2440  Bacteria  normal  hitchhiker  0.00698134 
 
 
-
 
NC_013131  Caci_1150  3-ketoacyl-(acyl-carrier-protein) reductase  36 
 
 
256 aa  115  5e-25  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_008686  Pden_2349  short-chain dehydrogenase/reductase SDR  36.74 
 
 
260 aa  115  5e-25  Paracoccus denitrificans PD1222  Bacteria  normal  0.482868  normal 
 
 
-
 
NC_012560  Avin_16730  glucose/ribitol dehydrogenase family protein  35.85 
 
 
262 aa  115  6e-25  Azotobacter vinelandii DJ  Bacteria  normal  0.681173  n/a   
 
 
-
 
NC_014158  Tpau_1853  short-chain dehydrogenase/reductase SDR  36.76 
 
 
251 aa  115  6.9999999999999995e-25  Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.635222  n/a   
 
 
-
 
NC_007333  Tfu_1682  3-ketoacyl-(acyl-carrier-protein) reductase  36.59 
 
 
252 aa  114  1.0000000000000001e-24  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_010002  Daci_5391  short-chain dehydrogenase/reductase SDR  33.97 
 
 
265 aa  114  2.0000000000000002e-24  Delftia acidovorans SPH-1  Bacteria  normal  0.602708  normal  0.800249 
 
 
-
 
NC_008391  Bamb_4144  short-chain dehydrogenase/reductase SDR  33.33 
 
 
234 aa  114  2.0000000000000002e-24  Burkholderia ambifaria AMMD  Bacteria  normal  normal  0.312324 
 
 
-
 
NC_011886  Achl_3692  short-chain dehydrogenase/reductase SDR  35.04 
 
 
263 aa  113  3e-24  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
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