| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcal_0013 |
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| Symbol | |
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| ID | 4909000 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pyrobaculum calidifontis JCM 11548 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009073 |
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| Strand | + |
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| Start bp | 8023 |
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| End bp | 8805 |
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| Gene Length | 783 bp |
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| Protein Length | 260 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 640123766 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_001054919 |
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| Protein GI | 126458641 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 38 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGTTACTAA AAGGAAAGGT AAGCATAGTC ACAGCGGCAA GTAGGGGAAT TGGCGCAGGC
GTTGCGTCCG TGTTAGCACG CGAGGGATCC GACTTAGTAA TAGCCTCCAG AGACAAGGCA
AGGCTTGAAG ACCTTGCAAA AAGACTCTCG TCTCAATACG GCGTCACCGT AGTCCCAGTG
AAAGCCGACT TGACTGTAAG AGAGGAGGTG AGGCGCATCT CGGTGGAGGC CCTCCGCAAC
TTTGGCAAAA TAGACGTGTT GGTGTACAAC ACAGGCCCCC CCAAGCCGGG GACGTTCTTA
GAGCTAAGCG AAGAGGATTG GGAATACGGG GTGAGACTCC TCCTAATGAG CGCCATCTGG
CTTACCAGAG ACGTAGTGCC GCACATGATA CAGAGGGGTG GAGGAAGGCT CATATATATA
ACCTCCAGCA CTCTAAAACA CCCGATACCC ACGCTTACAC TCTCCAACGT AATCCGCATC
TCTTTAGCAG GTCTGGTCAA AACCTTGGCA TATCAACTGG GGCAATACAA TATATTAGTC
AACGGTATTA TGCAAGGATA CATAGACACG GAGCGCGTAA GAGAAGTGGC GTCCACCAGA
GCCCAGCGTG AGGGGAGGTC TGTGGAAGAT GTGCTGAGGG AAATAGCAGC GGAAATTCCG
CTGGGCCGCC TAGGCAAGCC GGAGGAGATA GGCGAATTAG TGGCGTTTCT AGCCTCTGAT
AAAGCGAGCT ATATAAGTGG GTCGCTCATA CTAATTGACG GCGGGCGGAC TCTGTGTATT
TAA
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| Protein sequence | MLLKGKVSIV TAASRGIGAG VASVLAREGS DLVIASRDKA RLEDLAKRLS SQYGVTVVPV
KADLTVREEV RRISVEALRN FGKIDVLVYN TGPPKPGTFL ELSEEDWEYG VRLLLMSAIW
LTRDVVPHMI QRGGGRLIYI TSSTLKHPIP TLTLSNVIRI SLAGLVKTLA YQLGQYNILV
NGIMQGYIDT ERVREVASTR AQREGRSVED VLREIAAEIP LGRLGKPEEI GELVAFLASD
KASYISGSLI LIDGGRTLCI
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