| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1256 |
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| Symbol | |
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| ID | 7973180 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 1369937 |
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| End bp | 1370731 |
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| Gene Length | 795 bp |
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| Protein Length | 264 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 644791853 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_002943173 |
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| Protein GI | 239814263 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGATTTGG GCATTGCAGG CAAGACCGCG CTGGTGTGCG GCGCGAGCAA GGGACTGGGC
TACGGCTGCG CCGAGGCGCT GGTGCGCGAG GGCGTGAACG TGGTGATCGT GGCGCGCGGC
GCCGAGGCGC TCGAAGCGGC GGCTGCGAAG CTGGCCGCTG CGGCAGCCGG CTCGCCGGCG
CCTTTCGTCA AGCACGTGGC CGCCGACATC ACGACCGAGG CCGGCCGCGC GGCGGTGTTC
GCGCTCGGCC ACGACTTCGA CATCGTCGTC ACCAACGCCG GCGGCCCGCC CCCGGGCGAT
TTCCGCAACT GGGACCGCGA GGCATGGATC AAGGCCGTCG ACGCCAACAT GCTGACGCCC
ATCGAGCTCA TCAAGGCCAC GGTCGACGGC ATGGCCAAGC GCGGCTTCGG GCGCATCGTC
AACATCACCT CGAGCTCTGT GAAGTCGCCC ATCGACATCC TCGGCCTCTC CAACGGCGCG
CGCAGCGGCC TCACGGGCTT CGTGGCCGGC GTGGCGCGCA CGCCCATCGC CGCGCAGGGC
GTGACCATCA ACAACCTGCT GCCCGGTTCC TTCGACACCG ATCGCCTGAA GGGCACGATG
GCCGGTGCGG CGCAGAAGTC GGGACAAGAC TTCGACACCG TGTGGGAAGC CCGCAAGAAG
AACATTCCGG CCAGGCGCTT CGGCACGCCC GCCGAGTTCG GCGCCATCTG CGCCTTTCTC
TGCAGCATGC AGGCCGGCTA CATGACGGGA CAGAACGTGT TGGCCGACGG CGGCGCCTAC
CCCGGCACGT ACTGA
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| Protein sequence | MDLGIAGKTA LVCGASKGLG YGCAEALVRE GVNVVIVARG AEALEAAAAK LAAAAAGSPA
PFVKHVAADI TTEAGRAAVF ALGHDFDIVV TNAGGPPPGD FRNWDREAWI KAVDANMLTP
IELIKATVDG MAKRGFGRIV NITSSSVKSP IDILGLSNGA RSGLTGFVAG VARTPIAAQG
VTINNLLPGS FDTDRLKGTM AGAAQKSGQD FDTVWEARKK NIPARRFGTP AEFGAICAFL
CSMQAGYMTG QNVLADGGAY PGTY
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