| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cmaq_0839 |
|---|
| Symbol | |
|---|
| ID | 5709764 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Caldivirga maquilingensis IC-167 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009954 |
|---|
| Strand | + |
|---|
| Start bp | 883280 |
|---|
| End bp | 884071 |
|---|
| Gene Length | 792 bp |
|---|
| Protein Length | 263 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 641275342 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_001540664 |
|---|
| Protein GI | 159041412 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 0.544381 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 60 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGATCTTG GCTTAAGGGG GAAGGTCGCC ATCGTCACCG CCTCCAGTAG GGGTATTGGT
AAGGGTGTTG CTAGGGTTAT GCTTCAGGAG GGGGCTAGGG TTATGTTATT CGCCAGGAGT
ATTGATGAGC TTAAGAATAC GGCTCTTGAG CTTAGTAGGG AGACTGGGGG TGATGTGGCT
TATGTTCAAG GTGACTTAAC TAATAGGGAT GATGTAATGA GGCTTATTGA GGAAACCAGG
AGAGTAATGG GTCCCATAGA TGTGCTAGTT TACAACACAG GCCCACCTAA GCCTGGTTTA
TTCAGTGAAT TAACCTTCGA TGATTGGGAT TACGCGGTTA AACTCCTCCT ACTCTCAGCG
GTTTGGTTAA CTAAGGGTGT TGTTAATGAT ATGGTTAAGA GGGGTTGGGG TAGGTTAATC
TACGTCACAT CCCTAACCCT CAGACAGCCT ATAAGCAACC TAGTACTCTC AAACACTGTG
AGGCTTTCCT TAGCCGGCTT AGTTAAGTCA CTGGCCAATG AGTATGGGCC TAAGGGGATT
ACCGCAAACG GTGTTATGCA GGGTTACGTT ATGACTGATA GAGTTAGGAA ACTAGCTGAG
GACGAGGCTA AGAGGAGTGG TGTATCCATT GAGGAGGTTT TAAGAAGTAT GGCTAAGGAT
ATACCGGTGG GTAGGTATGG TAACCCTGAG GAAATCGGTT ACCTGGTTGC CTTCCTGGCC
AGTGATAAGG CATCATACAT AAATGGCTCA ATGATACTTA TAGATGGGGG CTTCGTTAAG
TGCGTCCCCT AG
|
|---|
| Protein sequence | MDLGLRGKVA IVTASSRGIG KGVARVMLQE GARVMLFARS IDELKNTALE LSRETGGDVA
YVQGDLTNRD DVMRLIEETR RVMGPIDVLV YNTGPPKPGL FSELTFDDWD YAVKLLLLSA
VWLTKGVVND MVKRGWGRLI YVTSLTLRQP ISNLVLSNTV RLSLAGLVKS LANEYGPKGI
TANGVMQGYV MTDRVRKLAE DEAKRSGVSI EEVLRSMAKD IPVGRYGNPE EIGYLVAFLA
SDKASYINGS MILIDGGFVK CVP
|
|---|
| |