Gene Bamb_2330 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamb_2330 
Symbol 
ID4309127 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria AMMD 
KingdomBacteria 
Replicon accessionNC_008390 
Strand
Start bp2567715 
End bp2568494 
Gene Length780 bp 
Protein Length259 aa 
Translation table11 
GC content71% 
IMG OID638150164 
Productshort-chain dehydrogenase/reductase SDR 
Protein accessionYP_774220 
Protein GI115352381 
COG category[I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only 
COG ID[COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGATCTCG GCATCGCAGG AAAGACCGCC CTCGTGTGCG CGGCGAGCAA GGGCCTCGGG 
CGCGGCTGCG CGGAAGCGCT GGCCGCCGAG GGCGTGAATC TCGTGATCGT CGCGCGCACG
CGCGACACGC TGGAGGAAAC AGCCGAGGAG ATCCGCGCCG CGTCGAATGT GTCGGTCACT
GCCGTCGCAT GCGACATCAC GACGCCCGAC GGGCGCGCGG CCGCGCTCGC CGCCTGCCCG
CAGCCGGATA TTCTCGTGAA CAATGCGGGC GGCCCGCCGC CCGGCGACTT CCGCGATTTC
TCGCATGACG ACTGGATCCG CGCGCTCGAG GCGAACATGC TGACGCCGAT CGAGCTGATC
CGCGCGACCG TCGACGGGAT GATCGGGCGC GGCTTCGGCC GGATCGTCAA TATCACGAGT
TCGGCCGTGA AGGCGCCGAT CGACGTGCTT GCGCTGTCGA ACGGCGCGCG CTCGGGGCTG
ACCGGCTTCG TCGCGGGGCT GTCGCGCAAG GTCGCCGGCC AGGGCGTGAC GATCAACAAC
CTGCTGCCGG GGCTGTTCGA CACCGACCGG ATCGCGACGA CGCTTGCCGC GTCGGCGAAG
GCGCAGGGCG TGACGGTCGA CGAGCTGCGC GCGCGGCGCG CGAAGGAGAT CCCGGCCGGG
CGCCTCGGCA CGCGTGCCGA ATTCGGCGCC GCGTGCGCGT TTCTCTGCAG CGTGCATGCC
GGCTATATCA CCGGGCAGAA CTGGCTGCTC GACGGCGGCG CGTATCCGGG CACGTTCTGA
 
Protein sequence
MDLGIAGKTA LVCAASKGLG RGCAEALAAE GVNLVIVART RDTLEETAEE IRAASNVSVT 
AVACDITTPD GRAAALAACP QPDILVNNAG GPPPGDFRDF SHDDWIRALE ANMLTPIELI
RATVDGMIGR GFGRIVNITS SAVKAPIDVL ALSNGARSGL TGFVAGLSRK VAGQGVTINN
LLPGLFDTDR IATTLAASAK AQGVTVDELR ARRAKEIPAG RLGTRAEFGA ACAFLCSVHA
GYITGQNWLL DGGAYPGTF