More than 300 homologs were found in PanDaTox collection
for query gene GSU3031 on replicon NC_002939
Organism: Geobacter sulfurreducens PCA



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_002939  GSU3031  sigma-54 dependent transcriptional regulator  100 
 
 
511 aa  1035    Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_0088  sigma-54 factor, interaction region  79.51 
 
 
491 aa  756    Geobacter metallireducens GS-15  Bacteria  hitchhiker  0.00217013  hitchhiker  0.0000044852 
 
 
-
 
NC_008554  Sfum_2866  response regulator receiver protein  53.94 
 
 
509 aa  546  1e-154  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_008609  Ppro_3363  sigma-54 factor interaction domain-containing protein  56.82 
 
 
491 aa  546  1e-154  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_0304  response regulator receiver protein  54.58 
 
 
541 aa  543  1e-153  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_0287  Sigma 54 interacting domain protein  57.02 
 
 
494 aa  530  1e-149  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_010814  Glov_1096  response regulator receiver protein  55.19 
 
 
499 aa  497  1e-139  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_007498  Pcar_2774  putative two component response regulator  55.67 
 
 
491 aa  498  1e-139  Pelobacter carbinolicus DSM 2380  Bacteria  hitchhiker  0.0000172283  n/a   
 
 
-
 
NC_007760  Adeh_4240  two component, sigma54 specific, Fis family transcriptional regulator  40.54 
 
 
469 aa  174  2.9999999999999996e-42  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_011145  AnaeK_4373  two component, sigma54 specific, transcriptional regulator, Fis family  40.83 
 
 
469 aa  172  9e-42  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_011891  A2cp1_4396  two component, sigma54 specific, transcriptional regulator, Fis family  40.83 
 
 
469 aa  172  9e-42  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_013385  Adeg_0173  two component, sigma54 specific, transcriptional regulator, Fis family  42.13 
 
 
463 aa  169  1e-40  Ammonifex degensii KC4  Bacteria  normal  0.127235  n/a   
 
 
-
 
NC_009674  Bcer98_0762  putative PAS/PAC sensor protein  40.43 
 
 
457 aa  169  1e-40  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_009253  Dred_1510  two component, sigma54 specific, Fis family transcriptional regulator  37.76 
 
 
448 aa  167  2.9999999999999998e-40  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_013440  Hoch_3302  two component, sigma54 specific, transcriptional regulator, Fis family  34.78 
 
 
472 aa  168  2.9999999999999998e-40  Haliangium ochraceum DSM 14365  Bacteria  normal  0.334689  normal  0.605218 
 
 
-
 
NC_012560  Avin_26490  sigma54-dependent activator protein  41.48 
 
 
485 aa  167  2.9999999999999998e-40  Azotobacter vinelandii DJ  Bacteria  normal  0.593646  n/a   
 
 
-
 
NC_013173  Dbac_2653  putative two component, sigma54 specific, transcriptional regulator, Fis family  37.04 
 
 
482 aa  167  5e-40  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_009675  Anae109_0965  two component, sigma54 specific, Fis family transcriptional regulator  37.85 
 
 
466 aa  166  1.0000000000000001e-39  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.605384  normal 
 
 
-
 
NC_013223  Dret_1201  PAS modulated sigma54 specific transcriptional regulator, Fis family  39.17 
 
 
471 aa  165  2.0000000000000002e-39  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal 
 
 
-
 
NC_009719  Plav_2050  two component, sigma54 specific, Fis family transcriptional regulator  42.11 
 
 
511 aa  164  2.0000000000000002e-39  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.155124  hitchhiker  0.000156568 
 
 
-
 
NC_009483  Gura_2914  two component, sigma-54 specific, Fis family transcriptional regulator  42.5 
 
 
459 aa  165  2.0000000000000002e-39  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_011901  Tgr7_1973  response regulator receiver protein  37.5 
 
 
491 aa  164  3e-39  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_011060  Ppha_1319  two component, sigma54 specific, transcriptional regulator, Fis family  43.56 
 
 
452 aa  164  4.0000000000000004e-39  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  n/a   
 
 
-
 
NC_011769  DvMF_0823  two component, sigma54 specific, transcriptional regulator, Fis family  40.13 
 
 
456 aa  164  4.0000000000000004e-39  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.449732 
 
 
-
 
NC_007498  Pcar_2145  two component signal transduction response regulator  40.74 
 
 
492 aa  163  6e-39  Pelobacter carbinolicus DSM 2380  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_3076  two component, sigma54 specific, transcriptional regulator, Fis family  37.71 
 
 
454 aa  163  7e-39  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_011206  Lferr_2568  two component, sigma54 specific, transcriptional regulator, Fis family  37.81 
 
 
457 aa  163  7e-39  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  0.0491002  normal 
 
 
-
 
NC_011761  AFE_2955  sigma-54 dependent DNA-binding response regulator, putative  37.81 
 
 
457 aa  163  7e-39  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  n/a   
 
 
-
 
NC_002939  GSU1039  sigma-54 dependent DNA-binding response regulator  42.28 
 
 
566 aa  163  8.000000000000001e-39  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_008261  CPF_2667  sigma-54 dependent transcriptional regulator/sensory box protein  37.79 
 
 
668 aa  163  8.000000000000001e-39  Clostridium perfringens ATCC 13124  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_3475  two component, sigma54 specific, transcriptional regulator, Fis family  45.13 
 
 
453 aa  162  1e-38  Geobacter sp. M21  Bacteria  n/a    normal  0.0804749 
 
 
-
 
NC_008262  CPR_2353  phosphocarrier HPr/sensory box protein/sigma-54 dependent transcriptional regulator  37.46 
 
 
668 aa  162  1e-38  Clostridium perfringens SM101  Bacteria  normal  n/a   
 
 
-
 
NC_008789  Hhal_0501  sigma-54 dependent trancsriptional regulator  40.14 
 
 
466 aa  162  1e-38  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_3413  two component, sigma54 specific, transcriptional regulator, Fis family  45.13 
 
 
453 aa  162  1e-38  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_002939  GSU0776  sigma-54 dependent DNA-binding response regulator  42.39 
 
 
465 aa  161  2e-38  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_002967  TDE2079  sigma-54 dependent transcriptional regulator, putative  42.44 
 
 
505 aa  162  2e-38  Treponema denticola ATCC 35405  Bacteria  normal  n/a   
 
 
-
 
NC_007347  Reut_A0930  helix-turn-helix, Fis-type  36.06 
 
 
436 aa  161  2e-38  Ralstonia eutropha JMP134  Bacteria  normal  0.179515  n/a   
 
 
-
 
NC_013132  Cpin_1347  transcriptional regulator, NifA subfamily, Fis Family  35.14 
 
 
1082 aa  161  3e-38  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_002977  MCA0764  transcriptional regulator NifA  39.13 
 
 
511 aa  161  3e-38  Methylococcus capsulatus str. Bath  Bacteria  normal  n/a   
 
 
-
 
NC_007760  Adeh_0922  two component, sigma54 specific, Fis family transcriptional regulator  36.28 
 
 
462 aa  161  3e-38  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.554455  n/a   
 
 
-
 
NC_007512  Plut_1527  Fis family transcriptional regulator  42.06 
 
 
537 aa  160  4e-38  Chlorobium luteolum DSM 273  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_4907  putative response regulator in two-component reguatory system, sigma54 dependent transcriptional regulator  34.97 
 
 
452 aa  160  4e-38  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.412473 
 
 
-
 
NC_008009  Acid345_1388  two component, sigma54 specific, Fis family transcriptional regulator  43.11 
 
 
463 aa  160  4e-38  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal  0.0597975 
 
 
-
 
NC_009675  Anae109_4389  two component, sigma54 specific, Fis family transcriptional regulator  37.04 
 
 
495 aa  160  4e-38  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.205713  normal  0.107293 
 
 
-
 
NC_009483  Gura_3391  two component, sigma-54 specific, Fis family transcriptional regulator  40 
 
 
455 aa  160  4e-38  Geobacter uraniireducens Rf4  Bacteria  normal  0.111806  n/a   
 
 
-
 
NC_011769  DvMF_2095  two component, sigma54 specific, transcriptional regulator, Fis family  35.42 
 
 
471 aa  160  5e-38  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_007760  Adeh_3471  two component, sigma54 specific, Fis family transcriptional regulator  35.88 
 
 
489 aa  160  6e-38  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_011145  AnaeK_0978  two component, sigma54 specific, transcriptional regulator, Fis family  36.76 
 
 
466 aa  160  6e-38  Anaeromyxobacter sp. K  Bacteria  normal  0.0932912  n/a   
 
 
-
 
NC_010803  Clim_1287  two component, sigma54 specific, transcriptional regulator, Fis family  42.48 
 
 
452 aa  159  8e-38  Chlorobium limicola DSM 245  Bacteria  normal  0.541874  n/a   
 
 
-
 
NC_009720  Xaut_1032  two component, sigma54 specific, Fis family transcriptional regulator  41.06 
 
 
461 aa  159  8e-38  Xanthobacter autotrophicus Py2  Bacteria  normal  normal  0.454426 
 
 
-
 
NC_009483  Gura_2678  two component, sigma-54 specific, Fis family transcriptional regulator  37.37 
 
 
457 aa  159  8e-38  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_011004  Rpal_1624  transcriptional regulator, NifA subfamily, Fis Family  41.15 
 
 
561 aa  159  9e-38  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.714408  n/a   
 
 
-
 
NC_011145  AnaeK_3555  two component, sigma54 specific, transcriptional regulator, Fis family  35.88 
 
 
489 aa  159  9e-38  Anaeromyxobacter sp. K  Bacteria  normal  0.369206  n/a   
 
 
-
 
NC_011891  A2cp1_3623  two component, sigma54 specific, transcriptional regulator, Fis family  35.88 
 
 
489 aa  159  9e-38  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.568637  n/a   
 
 
-
 
NC_006368  lpp0915  transcriptional regulator FleQ  40 
 
 
471 aa  159  1e-37  Legionella pneumophila str. Paris  Bacteria  n/a    n/a   
 
 
-
 
NC_006369  lpl0884  transcriptional regulator FleQ  40 
 
 
471 aa  159  1e-37  Legionella pneumophila str. Lens  Bacteria  n/a    n/a   
 
 
-
 
NC_013421  Pecwa_2692  putative sigma54 specific transcriptional regulator  35.81 
 
 
532 aa  159  1e-37  Pectobacterium wasabiae WPP163  Bacteria  normal  0.152723  n/a   
 
 
-
 
NC_010814  Glov_2245  two component, sigma54 specific, transcriptional regulator, Fis family  40.07 
 
 
460 aa  159  1e-37  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_012560  Avin_51000  Nif-specific sigma54-dependent transcriptional activator protein, NifA  38.46 
 
 
522 aa  159  1e-37  Azotobacter vinelandii DJ  Bacteria  normal  0.519777  n/a   
 
 
-
 
NC_007760  Adeh_1326  two component, sigma54 specific, Fis family transcriptional regulator  40.66 
 
 
485 aa  159  1e-37  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_007948  Bpro_1117  two component, sigma54 specific, Fis family transcriptional regulator  34.17 
 
 
466 aa  159  1e-37  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_013205  Aaci_2082  PAS modulated sigma54 specific transcriptional regulator, Fis family  42.31 
 
 
535 aa  159  1e-37  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  0.185328  n/a   
 
 
-
 
NC_011891  A2cp1_0976  two component, sigma54 specific, transcriptional regulator, Fis family  36.76 
 
 
1079 aa  159  1e-37  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_011883  Ddes_0769  two component, sigma54 specific, transcriptional regulator, Fis family  44.17 
 
 
453 aa  158  2e-37  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  normal  0.165448  n/a   
 
 
-
 
NC_002939  GSU0470  sigma-54 dependent response regulator  37.58 
 
 
453 aa  158  2e-37  Geobacter sulfurreducens PCA  Bacteria  normal  0.253212  n/a   
 
 
-
 
NC_002977  MCA0913  sigma-54 dependent transcriptional regulator  43.48 
 
 
548 aa  158  2e-37  Methylococcus capsulatus str. Bath  Bacteria  normal  0.635829  n/a   
 
 
-
 
NC_014230  CA2559_01515  rteB, two-component system response regulator  36.36 
 
 
478 aa  158  2e-37  Croceibacter atlanticus HTCC2559  Bacteria  normal  0.0452402  n/a   
 
 
-
 
NC_007643  Rru_A1388  NifA subfamily transcriptional regulator  41.74 
 
 
533 aa  158  2e-37  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_008009  Acid345_3750  Fis family transcriptional regulator  40.23 
 
 
379 aa  158  2e-37  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.634996  normal 
 
 
-
 
NC_011891  A2cp1_2629  two component, sigma54 specific, transcriptional regulator, Fis family  40.66 
 
 
483 aa  158  2e-37  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.14604  n/a   
 
 
-
 
NC_009943  Dole_1785  NifA subfamily transcriptional regulator  41.59 
 
 
507 aa  159  2e-37  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_013216  Dtox_0789  two component, sigma54 specific, transcriptional regulator, Fis family  40.35 
 
 
448 aa  157  3e-37  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  normal 
 
 
-
 
NC_007484  Noc_2362  sigma-54 dependent trancsriptional regulator  38.93 
 
 
479 aa  158  3e-37  Nitrosococcus oceani ATCC 19707  Bacteria  normal  n/a   
 
 
-
 
NC_011145  AnaeK_2533  two component, sigma54 specific, transcriptional regulator, Fis family  40.29 
 
 
483 aa  157  3e-37  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_013456  VEA_004047  C4-dicarboxylate transport transcriptional regulatory protein  33.33 
 
 
445 aa  158  3e-37  Vibrio sp. Ex25  Bacteria  normal  0.114732  n/a   
 
 
-
 
NC_007947  Mfla_0911  two component, sigma54 specific, Fis family transcriptional regulator  35.83 
 
 
456 aa  158  3e-37  Methylobacillus flagellatus KT  Bacteria  normal  normal 
 
 
-
 
NC_007947  Mfla_1055  two component, sigma54 specific, Fis family transcriptional regulator  35.83 
 
 
456 aa  158  3e-37  Methylobacillus flagellatus KT  Bacteria  normal  0.523432  normal 
 
 
-
 
NC_009512  Pput_1494  sigma-54 dependent trancsriptional regulator  38.06 
 
 
491 aa  157  4e-37  Pseudomonas putida F1  Bacteria  normal  normal  0.959617 
 
 
-
 
NC_002947  PP_4373  sigma54 specific transcriptional regulator, Fis family  38.06 
 
 
491 aa  157  4e-37  Pseudomonas putida KT2440  Bacteria  normal  normal  0.943128 
 
 
-
 
NC_010322  PputGB1_3934  sigma-54 dependent trancsriptional regulator  38.06 
 
 
491 aa  157  4e-37  Pseudomonas putida GB-1  Bacteria  normal  0.532257  normal 
 
 
-
 
NC_010498  EcSMS35_2369  acetoacetate metabolism regulatory protein AtoC  37.78 
 
 
461 aa  157  4e-37  Escherichia coli SMS-3-5  Bacteria  normal  0.0790211  normal 
 
 
-
 
NC_007952  Bxe_B0476  sigma-54 dependent trancsriptional regulator  35.82 
 
 
451 aa  157  4e-37  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_008554  Sfum_2764  two component, sigma54 specific, Fis family transcriptional regulator  37.76 
 
 
466 aa  157  4e-37  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_010730  SYO3AOP1_1166  two component, sigma54 specific, transcriptional regulator, Fis family  38.52 
 
 
459 aa  157  5.0000000000000005e-37  Sulfurihydrogenibium sp. YO3AOP1  Bacteria  hitchhiker  0.0000411506  n/a   
 
 
-
 
NC_009832  Spro_2440  NifA subfamily transcriptional regulator  37.25 
 
 
688 aa  157  5.0000000000000005e-37  Serratia proteamaculans 568  Bacteria  normal  normal 
 
 
-
 
NC_010676  Bphyt_4003  putative sigma54 specific transcriptional regulator  35.63 
 
 
451 aa  157  6e-37  Burkholderia phytofirmans PsJN  Bacteria  normal  0.731384  normal 
 
 
-
 
NC_007643  Rru_A3104  two component, sigma54 specific, Fis family transcriptional regulator  39.83 
 
 
448 aa  157  6e-37  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_010468  EcolC_1430  acetoacetate metabolism regulatory protein AtoC  37.41 
 
 
461 aa  156  7e-37  Escherichia coli ATCC 8739  Bacteria  normal  0.324678  hitchhiker  0.00137179 
 
 
-
 
NC_007517  Gmet_3263  two component, sigma54 specific, Fis family transcriptional regulator  42.11 
 
 
464 aa  156  7e-37  Geobacter metallireducens GS-15  Bacteria  normal  hitchhiker  0.00000000257125 
 
 
-
 
NC_011145  AnaeK_0352  putative sigma54 specific transcriptional regulator  40.73 
 
 
554 aa  156  7e-37  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_013440  Hoch_4153  two component, sigma54 specific, transcriptional regulator, Fis family  41.18 
 
 
466 aa  156  7e-37  Haliangium ochraceum DSM 14365  Bacteria  normal  normal  0.11717 
 
 
-
 
NC_009436  Ent638_3204  NifA subfamily transcriptional regulator  37.09 
 
 
690 aa  156  7e-37  Enterobacter sp. 638  Bacteria  normal  normal 
 
 
-
 
NC_008345  Sfri_3906  transcriptional regulator, Fis family protein  38.89 
 
 
480 aa  156  7e-37  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_010803  Clim_0689  transcriptional regulator, NifA subfamily, Fis Family  40.77 
 
 
544 aa  156  7e-37  Chlorobium limicola DSM 245  Bacteria  normal  0.430174  n/a   
 
 
-
 
NC_010159  YpAngola_A3629  two-component system response regulator  35.78 
 
 
445 aa  156  8e-37  Yersinia pestis Angola  Bacteria  normal  normal 
 
 
-
 
NC_009708  YpsIP31758_1152  sigma-54 dependent DNA-binding response regulator  35.78 
 
 
445 aa  156  8e-37  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_007512  Plut_0344  two component Fis family transcriptional regulator  42.22 
 
 
452 aa  156  8e-37  Chlorobium luteolum DSM 273  Bacteria  normal  0.0882822  normal  0.355114 
 
 
-
 
NC_010465  YPK_1259  two component, sigma54 specific, Fis family transcriptional regulator  35.78 
 
 
445 aa  156  8e-37  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_011126  HY04AAS1_1157  transcriptional regulator, NifA subfamily, Fis Family  39.48 
 
 
502 aa  156  8e-37  Hydrogenobaculum sp. Y04AAS1  Bacteria  normal  n/a   
 
 
-
 
NC_010623  Bphy_3833  putative sigma54 specific transcriptional regulator  35.15 
 
 
450 aa  156  8e-37  Burkholderia phymatum STM815  Bacteria  normal  normal  0.859471 
 
 
-
 
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