| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_1624 |
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| Symbol | |
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| ID | 6409281 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | - |
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| Start bp | 1738722 |
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| End bp | 1740407 |
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| Gene Length | 1686 bp |
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| Protein Length | 561 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 642711513 |
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| Product | transcriptional regulator, NifA subfamily, Fis Family |
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| Protein accession | YP_001990628 |
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| Protein GI | 192290023 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG3604] Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains |
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| TIGRFAM ID | [TIGR01817] Nif-specific regulatory protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 0.714408 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCGATGG CCCAAAATTC CCGCCGAGCT CCTGCCGCCC CCATCGCGCC CGAGCCCCCC
AAACGCCTCG CGACGCTGGA CCTCAGCGGC GAACCGGAAG GTTTCGTCGA CGAATTCACC
CACTGCTTCA CCGGCGAATG CCGGGTCAAT GTGTTGCAGA TCCTTTTTCG CATCAATCAG
GTGCTGACGC AGAACGCTGA CCTCGCCACG CTGGTGTCGA TCATTCTCGA CGGCATGCGC
CAGCAGATGC GGATGCAGCG CGGCGTGATG ATGCTGTACG ATCGCCACTC CGACGCGATC
TTCATCCACG ACAGCTTCGG ACTGACCGAG GAGGAGCGCG GCCGCGGCAT CTACGCGCCC
GGCGAAGGAA TCACCGGCAA GGTGGTCGAG ACCGGCAAGC CGATCATCAT CCCGCGGGTG
ATCGACAGCC CGGACTTTCT CGATCGCACC CGCGCCCACA ACAAGGGGCG CAAGCAGGAC
AAGCTGGCGT TCTTCTGCGT GCCGATCGTG CTCGCCCAGA AGGTGCTCGG CACCATCTGC
GCCGAGCGCG TCTATATGAA TCAGCGGCTG CTGAATCAGG ATGCCGAACT GCTGGCGATG
GTCGCCTCGC TGATCGCACC GGCGGTCGAG CTGTATCTGA TCGAGAACGT CGACAAGGTG
CGGCTGGAGA CCGAGAACAG GCGGCTGAAA AGCGAGCTGA AGCAGCGCTT TCGCCCGGCC
AACATCATCG GCAACTCCAA GCCGATGCAG GAAGTCTACG CCATGGTGCA CAAGGTGGCC
TCGACCAAGG CCACCGTGCT GCTGCTCGGC GAAAGCGGCG TCGGCAAGGA GCTGGTGGCG
AGCGCGCTGC ACTACAACAG CCCAGTGGCC GACGGCCCGT TCATCAAGGC GAACTGCGCT
GCGCTGCCCG AAGCGCTGGC GGAGAGCGAG CTGTTCGGCC ACGAGCGCGG CGCGTTCACC
AGCGCGATCG CCACTCACAA GGGTTACTTC GAACAGGCAT CTGGCGGCAC GATCTTTCTC
GACGAGGTCG GCGAATTAAG TCTACCGACG CAGGCCAAGC TGCTGCGCGT ACTGCAGGAA
CGGACGTTCG AGCGCGTCGG CGGCGCCAAG CCGGTCAAAG TCGATGTCCG GATCATCGCC
GCCACCAACC GCAATCTCGC CGAGATGGTC GCTGAGGGCA CCTTCCGCGA AGATCTGTTC
TATCGCCTCA ACGTCTTCCC GATCACCATC CCGCCGCTGC GCGATCGCGG CTCGGACGTG
ATCACCCTCG CGGACCACTT CGTCACCACC TATTCCGCCG AAATCGGCAA ACCGATCAAA
CGGATCTCGA CGCCTGCGAT CAACATGCTG ATGAGCTATC ACTGGCCCGG CAACGTCCGC
GAGCTGGAGA ACGTGATCGA GCGATCGGTG ATCCTGGCGG AGGAAGGCGT GATCCACGGC
TACGATCTGC CGCCGTCGCT GCAGACGCCG ACCGAAACCG GGACCGGCTT CAGTGGCACG
CTCGAAGACC GCGTCACGGC AGTCGAATAC GAGATGATCG TCGAGGCGCT CAAAGCCTCG
AATGGCAATG TCGGCCAGGC CGCCACCACG CTCGGCCTGA CGCGGCGAAT GCTCGGCCTG
CGGATGGAGC GCCACGGACT GACCTACAAG ACATTCCGCA CCGCAGGGCT GCGCCCGCGG
AACTGA
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| Protein sequence | MPMAQNSRRA PAAPIAPEPP KRLATLDLSG EPEGFVDEFT HCFTGECRVN VLQILFRINQ
VLTQNADLAT LVSIILDGMR QQMRMQRGVM MLYDRHSDAI FIHDSFGLTE EERGRGIYAP
GEGITGKVVE TGKPIIIPRV IDSPDFLDRT RAHNKGRKQD KLAFFCVPIV LAQKVLGTIC
AERVYMNQRL LNQDAELLAM VASLIAPAVE LYLIENVDKV RLETENRRLK SELKQRFRPA
NIIGNSKPMQ EVYAMVHKVA STKATVLLLG ESGVGKELVA SALHYNSPVA DGPFIKANCA
ALPEALAESE LFGHERGAFT SAIATHKGYF EQASGGTIFL DEVGELSLPT QAKLLRVLQE
RTFERVGGAK PVKVDVRIIA ATNRNLAEMV AEGTFREDLF YRLNVFPITI PPLRDRGSDV
ITLADHFVTT YSAEIGKPIK RISTPAINML MSYHWPGNVR ELENVIERSV ILAEEGVIHG
YDLPPSLQTP TETGTGFSGT LEDRVTAVEY EMIVEALKAS NGNVGQAATT LGLTRRMLGL
RMERHGLTYK TFRTAGLRPR N
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