More than 300 homologs were found in PanDaTox collection
for query gene AFE_2955 on replicon NC_011761
Organism: Acidithiobacillus ferrooxidans ATCC 23270



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011206  Lferr_2568  two component, sigma54 specific, transcriptional regulator, Fis family  100 
 
 
457 aa  924    Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  0.0491002  normal 
 
 
-
 
NC_011761  AFE_2955  sigma-54 dependent DNA-binding response regulator, putative  100 
 
 
457 aa  924    Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  n/a   
 
 
-
 
NC_007947  Mfla_0911  two component, sigma54 specific, Fis family transcriptional regulator  61.97 
 
 
456 aa  557  1e-157  Methylobacillus flagellatus KT  Bacteria  normal  normal 
 
 
-
 
NC_007947  Mfla_1055  two component, sigma54 specific, Fis family transcriptional regulator  61.97 
 
 
456 aa  557  1e-157  Methylobacillus flagellatus KT  Bacteria  normal  0.523432  normal 
 
 
-
 
NC_003910  CPS_4272  sigma-54 dependent response regulator  57.49 
 
 
457 aa  528  1e-149  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_007963  Csal_0717  two component, sigma54 specific, Fis family transcriptional regulator  58.47 
 
 
466 aa  520  1e-146  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_008752  Aave_0872  two component, sigma54 specific, Fis family transcriptional regulator  57.14 
 
 
471 aa  517  1.0000000000000001e-145  Acidovorax citrulli AAC00-1  Bacteria  normal  normal  0.0650247 
 
 
-
 
NC_010465  YPK_1259  two component, sigma54 specific, Fis family transcriptional regulator  57.98 
 
 
445 aa  511  1e-144  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_011094  SeSA_A2804  transcriptional regulatory protein ZraR  57.75 
 
 
445 aa  511  1e-144  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  normal 
 
 
-
 
NC_007908  Rfer_2786  two component, sigma54 specific, Fis family transcriptional regulator  58.33 
 
 
477 aa  514  1e-144  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_010159  YpAngola_A3629  two-component system response regulator  57.98 
 
 
445 aa  511  1e-144  Yersinia pestis Angola  Bacteria  normal  normal 
 
 
-
 
NC_012912  Dd1591_1085  putative two component, sigma54 specific, transcriptional regulator, Fis family  57.98 
 
 
445 aa  513  1e-144  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_007948  Bpro_1117  two component, sigma54 specific, Fis family transcriptional regulator  57.88 
 
 
466 aa  514  1e-144  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_009832  Spro_3651  two component, sigma54 specific, Fis family transcriptional regulator  58.11 
 
 
445 aa  511  1e-144  Serratia proteamaculans 568  Bacteria  normal  normal 
 
 
-
 
NC_009708  YpsIP31758_1152  sigma-54 dependent DNA-binding response regulator  57.98 
 
 
445 aa  511  1e-144  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_008781  Pnap_3376  two component, sigma54 specific, Fis family transcriptional regulator  59.23 
 
 
462 aa  514  1e-144  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.193945  normal 
 
 
-
 
NC_012917  PC1_3049  putative two component, sigma54 specific, transcriptional regulator, Fis family  58.43 
 
 
445 aa  509  1e-143  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_007484  Noc_0785  Fis family two component transcriptional regulator  58.99 
 
 
456 aa  510  1e-143  Nitrosococcus oceani ATCC 19707  Bacteria  normal  n/a   
 
 
-
 
NC_011080  SNSL254_A2763  transcriptional regulator ZraR  57.75 
 
 
445 aa  510  1e-143  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal 
 
 
-
 
NC_011205  SeD_A2938  transcriptional regulator ZraR  57.75 
 
 
445 aa  510  1e-143  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  normal 
 
 
-
 
NC_007614  Nmul_A1161  two component, sigma54 specific, Fis family transcriptional regulator  58.44 
 
 
453 aa  508  1e-143  Nitrosospira multiformis ATCC 25196  Bacteria  normal  n/a   
 
 
-
 
NC_012880  Dd703_2768  putative two component, sigma54 specific, transcriptional regulator, Fis family  57.88 
 
 
445 aa  508  1e-143  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_009436  Ent638_3039  two component, sigma54 specific, Fis family transcriptional regulator  57.88 
 
 
445 aa  508  1e-143  Enterobacter sp. 638  Bacteria  normal  0.992832  normal  0.337936 
 
 
-
 
NC_011083  SeHA_C2825  transcriptional regulator ZraR  57.75 
 
 
445 aa  510  1e-143  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  0.479389  normal 
 
 
-
 
NC_011149  SeAg_B2721  sigma-54 dependent transcriptional regulator/response regulator  57.53 
 
 
445 aa  507  9.999999999999999e-143  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
NC_013421  Pecwa_1226  putative two component, sigma54 specific, transcriptional regulator, Fis family  58.2 
 
 
445 aa  506  9.999999999999999e-143  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_012791  Vapar_0965  putative two component, sigma54 specific, transcriptional regulator, Fis family  57.08 
 
 
462 aa  503  1e-141  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_007498  Pcar_0498  two component response regulator  59.29 
 
 
451 aa  502  1e-141  Pelobacter carbinolicus DSM 2380  Bacteria  normal  n/a   
 
 
-
 
NC_007298  Daro_1804  two component, sigma54 specific, Fis family transcriptional regulator  56.47 
 
 
469 aa  498  1e-140  Dechloromonas aromatica RCB  Bacteria  normal  0.0358984  normal  0.379225 
 
 
-
 
CP001509  ECD_02446  predicted DNA-binding response regulator in two-component system  58.11 
 
 
444 aa  496  1e-139  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_1114  putative two component, sigma54 specific, transcriptional regulator, Fis family  58.11 
 
 
444 aa  496  1e-139  Escherichia coli DH1  Bacteria  normal  0.922386  n/a   
 
 
-
 
NC_012892  B21_02410  hypothetical protein  58.11 
 
 
444 aa  496  1e-139  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_009800  EcHS_A2707  sigma-54 dependent response regulator  58.33 
 
 
444 aa  498  1e-139  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_010658  SbBS512_E2919  sigma-54 dependent response regulator  58.11 
 
 
444 aa  496  1e-139  Shigella boydii CDC 3083-94  Bacteria  normal  0.70731  n/a   
 
 
-
 
NC_010468  EcolC_1123  two component, sigma54 specific, Fis family transcriptional regulator  58.11 
 
 
444 aa  496  1e-139  Escherichia coli ATCC 8739  Bacteria  normal  normal 
 
 
-
 
NC_011353  ECH74115_3788  sigma-54 dependent response regulator  58.11 
 
 
444 aa  496  1e-139  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal 
 
 
-
 
NC_009801  EcE24377A_2839  sigma-54 dependent response regulator  58.33 
 
 
444 aa  498  1e-139  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_010498  EcSMS35_2707  sigma-54 dependent response regulator  58.33 
 
 
444 aa  498  1e-139  Escherichia coli SMS-3-5  Bacteria  normal  normal 
 
 
-
 
NC_002977  MCA1713  sigma-54 dependent DNA-binding response regulator  58.54 
 
 
460 aa  491  9.999999999999999e-139  Methylococcus capsulatus str. Bath  Bacteria  normal  0.91858  n/a   
 
 
-
 
NC_011662  Tmz1t_1222  putative two component, sigma54 specific, transcriptional regulator, Fis family  58.96 
 
 
475 aa  494  9.999999999999999e-139  Thauera sp. MZ1T  Bacteria  normal  0.20015  n/a   
 
 
-
 
NC_011901  Tgr7_2494  response regulator receiver protein  57.81 
 
 
452 aa  488  1e-136  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_008789  Hhal_1340  two component, sigma54 specific, Fis family transcriptional regulator  57.59 
 
 
457 aa  486  1e-136  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_007520  Tcr_2187  two component, sigma54 specific, Fis family transcriptional regulator  53.11 
 
 
456 aa  473  1e-132  Thiomicrospira crunogena XCL-2  Bacteria  normal  n/a   
 
 
-
 
NC_007404  Tbd_2771  two component Fis family transcriptional regulator  56.12 
 
 
449 aa  470  1.0000000000000001e-131  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  normal  0.195731 
 
 
-
 
NC_008228  Patl_1603  two component, sigma54 specific, Fis family transcriptional regulator  52 
 
 
449 aa  459  9.999999999999999e-129  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_011138  MADE_01723  two-component system response regulator  51.24 
 
 
446 aa  446  1.0000000000000001e-124  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_008554  Sfum_2292  two component, sigma54 specific, Fis family transcriptional regulator  48.12 
 
 
462 aa  404  1e-111  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_011761  AFE_0447  sigma-54 dependent DNA-binding response regulator  46.7 
 
 
461 aa  394  1e-108  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  n/a   
 
 
-
 
NC_011206  Lferr_0608  two component, sigma54 specific, transcriptional regulator, Fis family  46.7 
 
 
461 aa  394  1e-108  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  normal 
 
 
-
 
NC_011080  SNSL254_A4507  transcriptional regulatory protein ZraR  45.92 
 
 
441 aa  353  2.9999999999999997e-96  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal  0.0570238 
 
 
-
 
NC_011094  SeSA_A4385  transcriptional regulatory protein ZraR  45.25 
 
 
441 aa  350  2e-95  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  normal  0.712665 
 
 
-
 
NC_011205  SeD_A4581  transcriptional regulatory protein ZraR  45.25 
 
 
441 aa  350  2e-95  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  normal 
 
 
-
 
NC_011149  SeAg_B4418  transcriptional regulatory protein ZraR  45.02 
 
 
441 aa  347  2e-94  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  0.298897  n/a   
 
 
-
 
NC_011083  SeHA_C4505  transcriptional regulatory protein ZraR  45.45 
 
 
441 aa  347  2e-94  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  normal  0.11324 
 
 
-
 
NC_010468  EcolC_1430  acetoacetate metabolism regulatory protein AtoC  42.98 
 
 
461 aa  345  1e-93  Escherichia coli ATCC 8739  Bacteria  normal  0.324678  hitchhiker  0.00137179 
 
 
-
 
NC_010498  EcSMS35_4454  transcriptional regulatory protein ZraR  44.06 
 
 
441 aa  344  2e-93  Escherichia coli SMS-3-5  Bacteria  normal  0.209341  hitchhiker  0.000519331 
 
 
-
 
NC_010658  SbBS512_E4497  transcriptional regulatory protein ZraR  44.29 
 
 
441 aa  344  2e-93  Shigella boydii CDC 3083-94  Bacteria  hitchhiker  0.0000279415  n/a   
 
 
-
 
CP001509  ECD_03881  fused DNA-binding response regulator in two-component regulatory system with ZraS: response regulator/sigma54 interaction protein  44.29 
 
 
441 aa  343  4e-93  Escherichia coli BL21(DE3)  Bacteria  normal  0.0124745  n/a   
 
 
-
 
NC_009801  EcE24377A_4549  transcriptional regulatory protein ZraR  44.06 
 
 
441 aa  343  4e-93  Escherichia coli E24377A  Bacteria  hitchhiker  0.000369022  n/a   
 
 
-
 
NC_010468  EcolC_4021  transcriptional regulatory protein ZraR  44.29 
 
 
441 aa  343  4e-93  Escherichia coli ATCC 8739  Bacteria  normal  0.0128092  normal  0.0227655 
 
 
-
 
NC_012892  B21_03834  hypothetical protein  44.29 
 
 
441 aa  343  4e-93  Escherichia coli BL21  Bacteria  normal  0.0118236  n/a   
 
 
-
 
CP001637  EcDH1_3989  two component, sigma54 specific, transcriptional regulator, Fis family  44.29 
 
 
441 aa  343  5e-93  Escherichia coli DH1  Bacteria  normal  0.716922  n/a   
 
 
-
 
CP001509  ECD_02147  fused response regulator of ato operon, in two-component system with AtoS: response regulator/sigma54 interaction protein  42.76 
 
 
461 aa  342  7e-93  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_1438  two component, sigma54 specific, transcriptional regulator, Fis family  42.76 
 
 
461 aa  342  7e-93  Escherichia coli DH1  Bacteria  normal  0.445705  n/a   
 
 
-
 
NC_012892  B21_02106  hypothetical protein  42.76 
 
 
461 aa  342  7e-93  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_009800  EcHS_A2361  acetoacetate metabolism regulatory protein AtoC  42.76 
 
 
461 aa  342  7e-93  Escherichia coli HS  Bacteria  normal  0.18992  n/a   
 
 
-
 
NC_008554  Sfum_2764  two component, sigma54 specific, Fis family transcriptional regulator  40.52 
 
 
466 aa  342  1e-92  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_010498  EcSMS35_2369  acetoacetate metabolism regulatory protein AtoC  42.42 
 
 
461 aa  340  2e-92  Escherichia coli SMS-3-5  Bacteria  normal  0.0790211  normal 
 
 
-
 
NC_009800  EcHS_A4238  transcriptional regulatory protein ZraR  44.16 
 
 
441 aa  340  2.9999999999999998e-92  Escherichia coli HS  Bacteria  normal  0.020936  n/a   
 
 
-
 
NC_007517  Gmet_0702  two component, sigma54 specific, Fis family transcriptional regulator  40.75 
 
 
460 aa  338  9.999999999999999e-92  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_011353  ECH74115_5475  transcriptional regulatory protein ZraR  44.06 
 
 
441 aa  338  9.999999999999999e-92  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal 
 
 
-
 
NC_011145  AnaeK_1971  two component, sigma54 specific, transcriptional regulator, Fis family  41.48 
 
 
473 aa  337  1.9999999999999998e-91  Anaeromyxobacter sp. K  Bacteria  normal  0.0887215  n/a   
 
 
-
 
NC_011891  A2cp1_2056  two component, sigma54 specific, transcriptional regulator, Fis family  41.48 
 
 
473 aa  337  1.9999999999999998e-91  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.732718  n/a   
 
 
-
 
NC_010730  SYO3AOP1_1750  two component, sigma54 specific, transcriptional regulator, Fis family  38.25 
 
 
466 aa  337  2.9999999999999997e-91  Sulfurihydrogenibium sp. YO3AOP1  Bacteria  normal  n/a   
 
 
-
 
NC_011145  AnaeK_3555  two component, sigma54 specific, transcriptional regulator, Fis family  42.32 
 
 
489 aa  335  7e-91  Anaeromyxobacter sp. K  Bacteria  normal  0.369206  n/a   
 
 
-
 
NC_011891  A2cp1_3623  two component, sigma54 specific, transcriptional regulator, Fis family  42.32 
 
 
489 aa  335  7e-91  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.568637  n/a   
 
 
-
 
NC_007760  Adeh_1908  two component, sigma54 specific, Fis family transcriptional regulator  41.48 
 
 
473 aa  335  7.999999999999999e-91  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_2158  two component, sigma54 specific, transcriptional regulator, Fis family  41.24 
 
 
453 aa  335  9e-91  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_007760  Adeh_3471  two component, sigma54 specific, Fis family transcriptional regulator  42.15 
 
 
489 aa  335  9e-91  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_011830  Dhaf_0198  two component, sigma54 specific, transcriptional regulator, Fis family  38.07 
 
 
461 aa  334  2e-90  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_3819  two component, sigma54 specific, transcriptional regulator, Fis family  46.15 
 
 
455 aa  334  2e-90  Geobacter bemidjiensis Bem  Bacteria  normal  0.785821  n/a   
 
 
-
 
NC_013889  TK90_2124  two component, sigma54 specific, transcriptional regulator, Fis family  44.11 
 
 
474 aa  334  2e-90  Thioalkalivibrio sp. K90mix  Bacteria  normal  normal  0.0345179 
 
 
-
 
NC_012918  GM21_3903  two component, sigma54 specific, transcriptional regulator, Fis family  45.89 
 
 
455 aa  333  4e-90  Geobacter sp. M21  Bacteria  n/a    hitchhiker  0.000574971 
 
 
-
 
NC_012918  GM21_2694  two component, sigma54 specific, transcriptional regulator, Fis family  40.04 
 
 
461 aa  332  9e-90  Geobacter sp. M21  Bacteria  n/a    hitchhiker  7.62039e-17 
 
 
-
 
NC_009943  Dole_0427  two component, sigma54 specific, Fis family transcriptional regulator  40.89 
 
 
458 aa  332  1e-89  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_013385  Adeg_0173  two component, sigma54 specific, transcriptional regulator, Fis family  46.28 
 
 
463 aa  331  1e-89  Ammonifex degensii KC4  Bacteria  normal  0.127235  n/a   
 
 
-
 
NC_009675  Anae109_3581  two component, sigma54 specific, Fis family transcriptional regulator  41.61 
 
 
490 aa  331  2e-89  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal  0.0374719 
 
 
-
 
NC_009483  Gura_1428  two component, sigma-54 specific, Fis family transcriptional regulator  40.27 
 
 
460 aa  331  2e-89  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_002939  GSU0963  sigma-54 dependent DNA-binding response regulator  39.91 
 
 
467 aa  330  4e-89  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_2823  two component, sigma54 specific, transcriptional regulator, Fis family  43.72 
 
 
447 aa  330  4e-89  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_011769  DvMF_0823  two component, sigma54 specific, transcriptional regulator, Fis family  43.75 
 
 
456 aa  329  6e-89  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.449732 
 
 
-
 
NC_013223  Dret_0097  two component, sigma54 specific, transcriptional regulator, Fis family  42.39 
 
 
448 aa  329  6e-89  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal 
 
 
-
 
NC_010814  Glov_3076  two component, sigma54 specific, transcriptional regulator, Fis family  41.46 
 
 
454 aa  329  7e-89  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_4192  two component, sigma-54 specific, Fis family transcriptional regulator  45.36 
 
 
454 aa  329  7e-89  Geobacter uraniireducens Rf4  Bacteria  hitchhiker  0.00227342  n/a   
 
 
-
 
NC_010814  Glov_0143  two component, sigma54 specific, transcriptional regulator, Fis family  40.62 
 
 
449 aa  328  1.0000000000000001e-88  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_011145  AnaeK_1869  two component, sigma54 specific, transcriptional regulator, Fis family  40.53 
 
 
464 aa  328  1.0000000000000001e-88  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_013223  Dret_0970  two component, sigma54 specific, transcriptional regulator, Fis family  40.95 
 
 
473 aa  328  1.0000000000000001e-88  Desulfohalobium retbaense DSM 5692  Bacteria  normal  0.0157817  hitchhiker  0.00000223455 
 
 
-
 
NC_009675  Anae109_1951  two component, sigma54 specific, Fis family transcriptional regulator  41.59 
 
 
470 aa  328  1.0000000000000001e-88  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.516267  normal 
 
 
-
 
NC_011891  A2cp1_1954  two component, sigma54 specific, transcriptional regulator, Fis family  40.31 
 
 
464 aa  328  2.0000000000000001e-88  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.611403  n/a   
 
 
-
 
NC_009483  Gura_3335  two component, sigma-54 specific, Fis family transcriptional regulator  39.52 
 
 
458 aa  327  2.0000000000000001e-88  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
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