| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_3906 |
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| Symbol | |
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| ID | 4280797 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | - |
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| Start bp | 4662715 |
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| End bp | 4664157 |
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| Gene Length | 1443 bp |
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| Protein Length | 480 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 638136727 |
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| Product | transcriptional regulator, Fis family protein |
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| Protein accession | YP_752570 |
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| Protein GI | 114565056 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG2202] FOG: PAS/PAC domain
[COG3604] Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACTGACT CTACAACCAC TAAATATATT GGCACCGATC ATTTTCTGCC TGAAAATACT
TTGTTGCTTA ATGCCATGAC AGAAGGCGTG TATGGTTTTG ATTTAGCGGG TAATGCGGTG
TTCATTAACC CCGCAGCAGA ACAAATGACT GGCTGGAAAA GTGCTGAATT AATTGGCAGA
AATATTCACG ACTGCCATCA TCATAGTCAT GCCGATGGTA GCCATTATCC TCAACATGAC
TGTCCCATTT ATCGCACCTT ACATGATGCT ATTCCTCGGC AAGTGAACGA AGATGTATTT
TGGCGTAAAG ATGGCAGCAG CTTTCCGGTG TATTACAGCT CAACCCCTGT ATATGATCAG
CAACAACTTG TCGGTGTTAT CGCGATATTT CGTGATGTAA GTATGCAAAA ACATACCGAG
CAATCGTTAA GACAAGCATT AGCACAAGTG CAGGCCTTGT CAGAACGGTT AGCATCAGAA
AATCAATACT TACTCACTGA GCTACAAGGC CAACAAGGCG CGTCGGGAAT ATCGGGTAAC
AGCCAACCTA TCAATCAACT CATTCAGCAG ATCCATTTGG TCGCTAATAC CGACAGTACG
GTGTTAATTT GCGGTGAAAA CGGCACCGGC AAAGAGTTAG TTGCGCGTAA CTTACACAGG
CTAAGTCATC GTAAAGACCA GCCGATGGTG AGTGTTAACT GCGCCGCATT TTCGACCGCA
TTGTTAGAAA GTGAGCTGTT TGGTCATGAA AAAGGCGCAT TTACTGGTGC TACAGCACGT
CGCAAAGGCC GGTTTGAATT AGCCAATAAT GGCACCTTAT TTTTAGATGA AATTGCTGAA
CTGAGTTTAT CGGCACAATC TAAATTGTTA CGGGTAATTC AAGAGCAAAG CTTCGAGCGC
GTTGGCAGTA GTGAAACCAT TAAGGTCAAT ATTCGCTTAG TGGCTGCCAC CCATCACGAT
TTAGCCGCGC GAGTAGAGCA AGGCTTGTTT CGCATGGACT TATATTATCG CTTGAATGTG
TTTCCAATAA CGGTGCCGCC GTTACGAGAG CGCCGCGAAG ATATTCCGCA ATTAGTCAGT
GATTTAGTCG CATCGCTGAG TAAAAAGCTT GGTAAAAAAA TCACTAAAGT GAGTGCTAAA
GGGTTGAAGA ACTTACAGCA ATACTCCTGG CCCGGTAACG TACGTGAGCT ACAAAACCTG
ATTGAGCGAG AAATGATTTT ATCGCAAAGC GGTCATTTGC TGTTTAATAC TTTACCTGTA
GCGGTTACAA CTCCGTTAGC TACCAGCACG TTAACCATGG CACAAGCCGA AGCTGCGCAT
ATTATTGCGA TATTAAATGC TAGCCACTGG CGTATTTCTG GTCCGTCTGG TGCTGCTGCG
ATGTTAGATA TGCCTGCGAG TACCTTACGA TCTAGGATGA AAAAGTTAGC TATTAGTCGC
TAA
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| Protein sequence | MTDSTTTKYI GTDHFLPENT LLLNAMTEGV YGFDLAGNAV FINPAAEQMT GWKSAELIGR
NIHDCHHHSH ADGSHYPQHD CPIYRTLHDA IPRQVNEDVF WRKDGSSFPV YYSSTPVYDQ
QQLVGVIAIF RDVSMQKHTE QSLRQALAQV QALSERLASE NQYLLTELQG QQGASGISGN
SQPINQLIQQ IHLVANTDST VLICGENGTG KELVARNLHR LSHRKDQPMV SVNCAAFSTA
LLESELFGHE KGAFTGATAR RKGRFELANN GTLFLDEIAE LSLSAQSKLL RVIQEQSFER
VGSSETIKVN IRLVAATHHD LAARVEQGLF RMDLYYRLNV FPITVPPLRE RREDIPQLVS
DLVASLSKKL GKKITKVSAK GLKNLQQYSW PGNVRELQNL IEREMILSQS GHLLFNTLPV
AVTTPLATST LTMAQAEAAH IIAILNASHW RISGPSGAAA MLDMPASTLR SRMKKLAISR
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