| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_4003 |
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| Symbol | |
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| ID | 6278001 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia phytofirmans PsJN |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010676 |
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| Strand | + |
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| Start bp | 17606 |
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| End bp | 18961 |
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| Gene Length | 1356 bp |
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| Protein Length | 451 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 642615106 |
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| Product | putative sigma54 specific transcriptional regulator |
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| Protein accession | YP_001887759 |
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| Protein GI | 187918728 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 0.731384 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 58 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATGAAAA TACTCGACCA GATTGAAGAG GCCAGTCCCG CGATTTCATA CGCGGGGCTG
ATCGAGCGGA TCGAGATTCT GCGCTCCACG TTGCGCTGGT CGTCGCGGCT GGAGCGCGCG
GACATCGACA AACTGCTCCG GCAAGCCACC TCGCTGCGCG ACGAGGTGAT GCAGCTCTCG
CACAAGGAGC GTTTCGTGCA AGCTGCGGTG GCCGCTGAGC CGCAGGAGCG CGCCGATCTG
TCGCGCGGCG CGCGTCGCAA GGCGTTGCTC GAACGCAGTT TCATTTTCGA AGGCACGTTC
GGCGACAATC CGCGCCTGCT CGAATCGCTC GAAATCGCCG AGAAAGCCGC GCCGACCGAT
TTGCCCGTGT TGATCGACGG CGAAAGCGGC ACCGGCAAGG AGTTGATGGC GAAGGTGATT
CACGCCAACG GCTCGCGAGC CGACAAGCCG TTCATTTCCG TGAACTGCGG TGCGATTCCC
GACAATCTGC TGGAGTCGGA ATTGTTCGGG CATCGCAAGG GCGCGTTCAC GGGGGCTTCG
AACGACCGCA AGGGCAAATT CGAAAGCGCG CATACAGGTA CGATCTTTCT CGACGAAATC
GGCGAGTTGC CGCTCGCCGG CCAGGTGAAG CTGTTGCGCG TGCTGGAAGC GCATGAGATT
CAACGCGTCG GGTCCGATGA AACGATTGCG GTGGACACGC GCATCGTCGC GGCGACCAAT
CGCAATCTGC GGCGGCTCAG CGAAGAGGGC AAATTCCGCG AGGATCTGTT CTACCGGCTT
AGCGTCATTC ATGTGACGTT GCCGCCGCTG CGCGAGCGTC GCGACGAAAT TCCTCTGCTG
ATTTCGTGGT TCGGCGACGA AGCCGCCGGC ACGTTAAAGC GCAGGCCGGT GCGATTGACG
CCGCGTTTGC GGGACTTTCT GCTGAACTAT GCGTATCCAG GCAATATCCG CGAGTTGCGC
AACGTGATGT ATCGCGTGTC GTGTCTGGCC GGCGATATGG CCGATGTCGA TCATTTACCG
GTGGACATGC GGCCGGCGGC GCCAGGAACC GCGGCGGCTT CCAACGCCGC GACCGCAACG
GGGCAGGAGC CGATCAGTGT AGCCAACCTG ATGTCGCTGA GCGACGCAAA GCGCGCCGCC
AGTGACGACG CCGAAAAAGC CTTCCTCGAG CGCGGCCTTC GCGAAGTGAG CGGCACGGTC
GCGGAACTGG CGCGTCGTAT CGACATGAAC CGTTCGCATC TGCAGATGCT TCTGAAGAAA
CACGGCCTGC ACTCGAAGGA TTTCCGCAAT CGCAATCAGC CTGCCGCGAA CAAGAACGGC
GCTGAGGATC GCGACGACGA AGACAACGAC ACGTGA
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| Protein sequence | MMKILDQIEE ASPAISYAGL IERIEILRST LRWSSRLERA DIDKLLRQAT SLRDEVMQLS
HKERFVQAAV AAEPQERADL SRGARRKALL ERSFIFEGTF GDNPRLLESL EIAEKAAPTD
LPVLIDGESG TGKELMAKVI HANGSRADKP FISVNCGAIP DNLLESELFG HRKGAFTGAS
NDRKGKFESA HTGTIFLDEI GELPLAGQVK LLRVLEAHEI QRVGSDETIA VDTRIVAATN
RNLRRLSEEG KFREDLFYRL SVIHVTLPPL RERRDEIPLL ISWFGDEAAG TLKRRPVRLT
PRLRDFLLNY AYPGNIRELR NVMYRVSCLA GDMADVDHLP VDMRPAAPGT AAASNAATAT
GQEPISVANL MSLSDAKRAA SDDAEKAFLE RGLREVSGTV AELARRIDMN RSHLQMLLKK
HGLHSKDFRN RNQPAANKNG AEDRDDEDND T
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