More than 300 homologs were found in PanDaTox collection
for query gene Coch_1479 on replicon NC_013162
Organism: Capnocytophaga ochracea DSM 7271



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013162  Coch_1479  histone family protein DNA-binding protein  100 
 
 
104 aa  207  5e-53  Capnocytophaga ochracea DSM 7271  Bacteria  normal  n/a   
 
 
-
 
NC_009441  Fjoh_1534  histone family protein DNA-binding protein  83.33 
 
 
96 aa  156  7e-38  Flavobacterium johnsoniae UW101  Bacteria  normal  0.926041  n/a   
 
 
-
 
NC_014230  CA2559_02675  DNA-binding protein HU  76.29 
 
 
97 aa  155  2e-37  Croceibacter atlanticus HTCC2559  Bacteria  normal  n/a   
 
 
-
 
NC_013061  Phep_0128  histone family protein DNA-binding protein  61.11 
 
 
100 aa  117  7e-26  Pedobacter heparinus DSM 2366  Bacteria  normal  normal 
 
 
-
 
NC_013730  Slin_5982  histone family protein DNA-binding protein  58.16 
 
 
100 aa  111  3e-24  Spirosoma linguale DSM 74  Bacteria  normal  normal  0.946495 
 
 
-
 
NC_013037  Dfer_4435  histone family protein DNA-binding protein  57.78 
 
 
101 aa  111  3e-24  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.90338  normal 
 
 
-
 
NC_002950  PG1258  DNA-binding protein HU  56.67 
 
 
92 aa  109  1.0000000000000001e-23  Porphyromonas gingivalis W83  Bacteria  n/a    normal 
 
 
-
 
NC_008255  CHU_3687  DNA-binding protein HU  57.47 
 
 
110 aa  106  1e-22  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_0938  histone family protein DNA-binding protein  52.22 
 
 
95 aa  98.2  3e-20  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_010830  Aasi_0154  histone family DNA-binding protein  42.55 
 
 
95 aa  80.9  0.000000000000006  Candidatus Amoebophilus asiaticus 5a2  Bacteria  n/a    normal 
 
 
-
 
NC_011060  Ppha_2673  histone family protein DNA-binding protein  42.7 
 
 
91 aa  77  0.00000000000007  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  0.156087  n/a   
 
 
-
 
NC_008261  CPF_2802  DNA-binding protein HU  42.86 
 
 
91 aa  76.3  0.0000000000001  Clostridium perfringens ATCC 13124  Bacteria  hitchhiker  0.000000141643  n/a   
 
 
-
 
NC_008262  CPR_2488  DNA-binding protein HU  42.86 
 
 
91 aa  76.3  0.0000000000001  Clostridium perfringens SM101  Bacteria  unclonable  0.0000000000405619  n/a   
 
 
-
 
NC_008639  Cpha266_0238  histone family protein DNA-binding protein  42.86 
 
 
91 aa  76.3  0.0000000000002  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  n/a   
 
 
-
 
NC_012034  Athe_0648  histone family protein DNA-binding protein  39.33 
 
 
91 aa  74.3  0.0000000000005  Anaerocellum thermophilum DSM 6725  Bacteria  unclonable  0.0000000000417185  n/a   
 
 
-
 
NC_011059  Paes_0293  histone family protein DNA-binding protein  41.57 
 
 
94 aa  73.6  0.0000000000008  Prosthecochloris aestuarii DSM 271  Bacteria  normal  0.416752  normal  0.0238993 
 
 
-
 
NC_010814  Glov_1888  histone family protein DNA-binding protein  40.45 
 
 
93 aa  72.8  0.000000000002  Geobacter lovleyi SZ  Bacteria  hitchhiker  0.00000630839  n/a   
 
 
-
 
NC_014212  Mesil_0431  histone family protein DNA-binding protein  38.2 
 
 
96 aa  72  0.000000000002  Meiothermus silvanus DSM 9946  Bacteria  decreased coverage  0.00947903  hitchhiker  0.00103246 
 
 
-
 
NC_010803  Clim_0201  histone family protein DNA-binding protein  41.76 
 
 
91 aa  71.6  0.000000000003  Chlorobium limicola DSM 245  Bacteria  hitchhiker  0.000000429798  n/a   
 
 
-
 
NC_013173  Dbac_2463  histone family protein DNA-binding protein  37.78 
 
 
90 aa  71.6  0.000000000004  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.0228112  n/a   
 
 
-
 
NC_009783  VIBHAR_02112  integration host factor subunit alpha  38 
 
 
98 aa  71.2  0.000000000004  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_008700  Sama_1737  integration host factor subunit beta  36.96 
 
 
95 aa  70.9  0.000000000005  Shewanella amazonensis SB2B  Bacteria  hitchhiker  0.0000000122677  hitchhiker  0.00231326 
 
 
-
 
NC_008609  Ppro_1181  histone family protein DNA-binding protein  36.96 
 
 
92 aa  70.9  0.000000000006  Pelobacter propionicus DSM 2379  Bacteria  normal  0.42545  n/a   
 
 
-
 
NC_008228  Patl_2465  integration host factor subunit beta  34.44 
 
 
96 aa  70.5  0.000000000008  Pseudoalteromonas atlantica T6c  Bacteria  unclonable  0.00000000804162  n/a   
 
 
-
 
NC_008740  Maqu_1028  integration host factor subunit beta  38.95 
 
 
98 aa  70.1  0.000000000009  Marinobacter aquaeolei VT8  Bacteria  normal  0.100562  n/a   
 
 
-
 
NC_009513  Lreu_0765  nucleoid protein Hbs  38.64 
 
 
91 aa  69.3  0.00000000001  Lactobacillus reuteri DSM 20016  Bacteria  hitchhiker  0.00000296782  n/a   
 
 
-
 
NC_008254  Meso_1172  histone-like DNA-binding protein  40.96 
 
 
90 aa  69.7  0.00000000001  Chelativorans sp. BNC1  Bacteria  normal  0.856335  n/a   
 
 
-
 
NC_008530  LGAS_0894  nucleoid DNA-binding protein  38.64 
 
 
91 aa  70.1  0.00000000001  Lactobacillus gasseri ATCC 33323  Bacteria  hitchhiker  8.08972e-16  hitchhiker  0.000000000000265027 
 
 
-
 
NC_008554  Sfum_2107  histone family protein DNA-binding protein  38.89 
 
 
90 aa  70.1  0.00000000001  Syntrophobacter fumaroxidans MPOB  Bacteria  decreased coverage  0.00000844989  hitchhiker  0.00906741 
 
 
-
 
NC_008609  Ppro_2302  histone family protein DNA-binding protein  38.82 
 
 
97 aa  69.7  0.00000000001  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_009901  Spea_2074  integration host factor subunit beta  34.78 
 
 
95 aa  69.3  0.00000000002  Shewanella pealeana ATCC 700345  Bacteria  unclonable  0.0000000000549511  n/a   
 
 
-
 
NC_011312  VSAL_I1731  integration host factor subunit alpha  38.55 
 
 
98 aa  68.9  0.00000000002  Aliivibrio salmonicida LFI1238  Bacteria  normal  0.074622  n/a   
 
 
-
 
NC_008228  Patl_2493  integration host factor subunit alpha  38.55 
 
 
98 aa  68.9  0.00000000002  Pseudoalteromonas atlantica T6c  Bacteria  normal  0.044668  n/a   
 
 
-
 
NC_013411  GYMC61_0465  histone family protein DNA-binding protein  35.56 
 
 
90 aa  69.3  0.00000000002  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_013456  VEA_003703  integration host factor alpha subunit  39.76 
 
 
98 aa  69.3  0.00000000002  Vibrio sp. Ex25  Bacteria  normal  0.281505  n/a   
 
 
-
 
NC_010831  Cphamn1_1992  histone family protein DNA-binding protein  35.11 
 
 
99 aa  68.6  0.00000000003  Chlorobium phaeobacteroides BS1  Bacteria  decreased coverage  0.0074793  normal  0.250036 
 
 
-
 
NC_009092  Shew_2505  histone family protein DNA-binding protein  37.08 
 
 
90 aa  68.6  0.00000000003  Shewanella loihica PV-4  Bacteria  hitchhiker  0.0000000791734  normal  0.581146 
 
 
-
 
NC_010506  Swoo_3110  histone family protein DNA-binding protein  37.08 
 
 
90 aa  68.6  0.00000000003  Shewanella woodyi ATCC 51908  Bacteria  unclonable  0.0000000105676  hitchhiker  0.00000299463 
 
 
-
 
NC_007498  Pcar_1686  DNA-binding protein HU-beta, NS1(HU-1)  34.83 
 
 
90 aa  68.6  0.00000000003  Pelobacter carbinolicus DSM 2380  Bacteria  hitchhiker  6.460310000000001e-19  n/a   
 
 
-
 
NC_008009  Acid345_4105  nucleoid protein Hbs  34.94 
 
 
110 aa  68.6  0.00000000003  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.340401  normal 
 
 
-
 
NC_009483  Gura_2622  histone family protein DNA-binding protein  38.82 
 
 
92 aa  68.2  0.00000000004  Geobacter uraniireducens Rf4  Bacteria  normal  0.349381  n/a   
 
 
-
 
NC_009831  Ssed_1544  histone family protein DNA-binding protein  37.08 
 
 
90 aa  68.2  0.00000000004  Shewanella sediminis HAW-EB3  Bacteria  unclonable  0.000000007734  hitchhiker  0.000745392 
 
 
-
 
NC_008528  OEOE_1010  nucleoid protein Hbs  37.5 
 
 
91 aa  68.2  0.00000000004  Oenococcus oeni PSU-1  Bacteria  normal  0.301873  n/a   
 
 
-
 
NC_009438  Sputcn32_2041  integration host factor subunit beta  34.78 
 
 
95 aa  68.2  0.00000000004  Shewanella putrefaciens CN-32  Bacteria  unclonable  0.0000000000705182  n/a   
 
 
-
 
NC_003910  CPS_2994  integration host factor, alpha subunit  35.35 
 
 
97 aa  67.8  0.00000000005  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_004347  SO_2401  integration host factor subunit beta  34.78 
 
 
95 aa  67.8  0.00000000005  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009674  Bcer98_2403  histone family protein DNA-binding protein  34.44 
 
 
90 aa  67.8  0.00000000005  Bacillus cytotoxicus NVH 391-98  Bacteria  unclonable  0.00000000237544  n/a   
 
 
-
 
NC_010002  Daci_4725  integration host factor, beta subunit  31.96 
 
 
113 aa  67.8  0.00000000005  Delftia acidovorans SPH-1  Bacteria  normal  0.929388  normal 
 
 
-
 
NC_009457  VC0395_A0846  integration host factor subunit alpha  36 
 
 
98 aa  67.8  0.00000000005  Vibrio cholerae O395  Bacteria  hitchhiker  0.0000000000670658  n/a   
 
 
-
 
NC_009092  Shew_1955  integration host factor subunit beta  34.78 
 
 
95 aa  67.8  0.00000000005  Shewanella loihica PV-4  Bacteria  unclonable  0.00000000468135  unclonable  0.00000320833 
 
 
-
 
NC_008321  Shewmr4_1925  integration host factor subunit beta  34.78 
 
 
95 aa  67.8  0.00000000005  Shewanella sp. MR-4  Bacteria  unclonable  0.000000000515528  unclonable  0.0000000000266845 
 
 
-
 
NC_008322  Shewmr7_2053  integration host factor subunit beta  34.78 
 
 
95 aa  67.8  0.00000000005  Shewanella sp. MR-7  Bacteria  unclonable  0.000000159286  unclonable  0.0000244011 
 
 
-
 
NC_013206  Aaci_3021  histone family protein DNA-binding protein  31.11 
 
 
91 aa  67.8  0.00000000005  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  n/a   
 
 
-
 
NC_008577  Shewana3_1978  integration host factor subunit beta  34.78 
 
 
95 aa  67.8  0.00000000005  Shewanella sp. ANA-3  Bacteria  unclonable  0.00000000261968  unclonable  0.000000000047672 
 
 
-
 
NC_012791  Vapar_1613  integration host factor, beta subunit  31.43 
 
 
104 aa  67.4  0.00000000006  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_008345  Sfri_2122  integration host factor subunit beta  34.78 
 
 
95 aa  67.4  0.00000000006  Shewanella frigidimarina NCIMB 400  Bacteria  unclonable  0.0000000000593472  n/a   
 
 
-
 
NC_008700  Sama_1227  HU family DNA-binding protein  37.08 
 
 
90 aa  67.4  0.00000000006  Shewanella amazonensis SB2B  Bacteria  hitchhiker  0.0000165625  normal 
 
 
-
 
NC_009901  Spea_2678  histone family protein DNA-binding protein  37.08 
 
 
90 aa  67.4  0.00000000007  Shewanella pealeana ATCC 700345  Bacteria  unclonable  0.0000000000589622  n/a   
 
 
-
 
NC_009667  Oant_2203  histone family protein DNA-binding protein  39.76 
 
 
91 aa  67  0.00000000007  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.0471577  n/a   
 
 
-
 
NC_013946  Mrub_0180  histone family protein DNA-binding protein  36.05 
 
 
100 aa  67.4  0.00000000007  Meiothermus ruber DSM 1279  Bacteria  unclonable  0.000000000456063  normal  0.670354 
 
 
-
 
NC_007954  Sden_1754  integration host factor subunit beta  34.78 
 
 
95 aa  67.4  0.00000000007  Shewanella denitrificans OS217  Bacteria  hitchhiker  0.00000000014676  n/a   
 
 
-
 
NC_002977  MCA0532  DNA-binding protein HU-beta  37.08 
 
 
90 aa  67  0.00000000008  Methylococcus capsulatus str. Bath  Bacteria  decreased coverage  0.00043104  n/a   
 
 
-
 
NC_012793  GWCH70_2154  histone family protein DNA-binding protein  34.44 
 
 
90 aa  67  0.00000000008  Geobacillus sp. WCH70  Bacteria  hitchhiker  0.000000552537  n/a   
 
 
-
 
NC_007520  Tcr_1180  histone-like DNA-binding protein  37.08 
 
 
90 aa  67  0.00000000008  Thiomicrospira crunogena XCL-2  Bacteria  unclonable  2.95654e-16  n/a   
 
 
-
 
NC_007963  Csal_3249  histone-like DNA-binding protein  35.56 
 
 
90 aa  67  0.00000000008  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_1926  histone family protein DNA-binding protein  35.87 
 
 
92 aa  66.6  0.00000000009  Geobacter lovleyi SZ  Bacteria  unclonable  0.0000000201993  n/a   
 
 
-
 
NC_009052  Sbal_2071  integration host factor subunit beta  34.78 
 
 
95 aa  67  0.00000000009  Shewanella baltica OS155  Bacteria  hitchhiker  0.00000034854  n/a   
 
 
-
 
NC_009997  Sbal195_2395  integration host factor subunit beta  34.78 
 
 
95 aa  67  0.00000000009  Shewanella baltica OS195  Bacteria  unclonable  0.0000000343473  unclonable  0.00000762549 
 
 
-
 
NC_009665  Shew185_2278  integration host factor subunit beta  34.78 
 
 
95 aa  67  0.00000000009  Shewanella baltica OS185  Bacteria  unclonable  0.000000000000837765  n/a   
 
 
-
 
NC_008345  Sfri_2593  histone family protein DNA-binding protein  37.08 
 
 
91 aa  67  0.00000000009  Shewanella frigidimarina NCIMB 400  Bacteria  hitchhiker  0.0000000173721  n/a   
 
 
-
 
NC_011663  Sbal223_2067  integration host factor subunit beta  34.78 
 
 
95 aa  67  0.00000000009  Shewanella baltica OS223  Bacteria  hitchhiker  0.00000000478736  unclonable  0.0000000000012991 
 
 
-
 
NC_011369  Rleg2_1250  histone family protein DNA-binding protein  39.76 
 
 
91 aa  66.6  0.0000000001  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_009505  BOV_1064  DNA-binding protein HU  39.76 
 
 
91 aa  66.6  0.0000000001  Brucella ovis ATCC 25840  Bacteria  normal  0.203306  n/a   
 
 
-
 
NC_009483  Gura_4407  histone family protein DNA-binding protein  37.23 
 
 
94 aa  66.6  0.0000000001  Geobacter uraniireducens Rf4  Bacteria  unclonable  0.0000000000192025  n/a   
 
 
-
 
NC_010506  Swoo_2312  integration host factor subunit beta  34.78 
 
 
95 aa  66.2  0.0000000001  Shewanella woodyi ATCC 51908  Bacteria  hitchhiker  0.000000159711  hitchhiker  0.000000300932 
 
 
-
 
NC_007512  Plut_1957  histone-like DNA-binding protein  40 
 
 
91 aa  66.6  0.0000000001  Chlorobium luteolum DSM 273  Bacteria  hitchhiker  0.000024611  normal  0.388646 
 
 
-
 
NC_008751  Dvul_1364  histone family protein DNA-binding protein  36.67 
 
 
90 aa  66.6  0.0000000001  Desulfovibrio vulgaris DP4  Bacteria  normal  normal 
 
 
-
 
NC_011149  SeAg_B4414  transcriptional regulator HU subunit alpha  36.67 
 
 
90 aa  65.9  0.0000000002  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  0.18011  n/a   
 
 
-
 
NC_011138  MADE_02444  integration host factor subunit alpha  37.35 
 
 
99 aa  65.5  0.0000000002  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  0.0239469  n/a   
 
 
-
 
NC_011083  SeHA_C4501  transcriptional regulator HU subunit alpha  36.67 
 
 
90 aa  65.9  0.0000000002  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  0.358882  normal  0.0495174 
 
 
-
 
NC_009831  Ssed_2297  integration host factor subunit beta  33.7 
 
 
95 aa  65.9  0.0000000002  Shewanella sediminis HAW-EB3  Bacteria  unclonable  0.0000000102507  unclonable  0.0000000000697895 
 
 
-
 
NC_004310  BR1105  DNA-binding protein HU  39.76 
 
 
91 aa  65.9  0.0000000002  Brucella suis 1330  Bacteria  normal  0.965912  n/a   
 
 
-
 
NC_007498  Pcar_1424  integration host factor, alpha subunit  38.82 
 
 
93 aa  65.5  0.0000000002  Pelobacter carbinolicus DSM 2380  Bacteria  hitchhiker  0.000000184784  n/a   
 
 
-
 
NC_011205  SeD_A4577  transcriptional regulator HU subunit alpha  36.67 
 
 
90 aa  65.9  0.0000000002  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  normal  0.511964 
 
 
-
 
NC_007514  Cag_0362  histone-like DNA-binding protein  37.65 
 
 
91 aa  65.5  0.0000000002  Chlorobium chlorochromatii CaD3  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_1996  histone family protein DNA-binding protein  38.82 
 
 
92 aa  66.2  0.0000000002  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_008789  Hhal_0600  histone family protein DNA-binding protein  33.71 
 
 
90 aa  65.5  0.0000000002  Halorhodospira halophila SL1  Bacteria  normal  0.0791658  n/a   
 
 
-
 
NC_011094  SeSA_A4381  transcriptional regulator HU subunit alpha  36.67 
 
 
90 aa  65.9  0.0000000002  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  normal  0.842423 
 
 
-
 
NC_012850  Rleg_1341  histone family protein DNA-binding protein  38.2 
 
 
91 aa  66.2  0.0000000002  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_012918  GM21_2224  histone family protein DNA-binding protein  38.82 
 
 
92 aa  66.2  0.0000000002  Geobacter sp. M21  Bacteria  n/a    hitchhiker  0.0000923552 
 
 
-
 
NC_007954  Sden_1604  integration host factor subunit alpha  34.65 
 
 
99 aa  65.5  0.0000000002  Shewanella denitrificans OS217  Bacteria  normal  0.0316087  n/a   
 
 
-
 
NC_007954  Sden_2492  histone-like DNA-binding protein  37.08 
 
 
90 aa  65.9  0.0000000002  Shewanella denitrificans OS217  Bacteria  hitchhiker  0.00401844  n/a   
 
 
-
 
NC_007969  Pcryo_1653  histone-like DNA-binding protein  37.93 
 
 
90 aa  65.9  0.0000000002  Psychrobacter cryohalolentis K5  Bacteria  unclonable  0.00000047794  unclonable  0.0000440637 
 
 
 
NC_011080  SNSL254_A4503  transcriptional regulator HU subunit alpha  36.67 
 
 
90 aa  65.9  0.0000000002  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal  0.0164141 
 
 
-
 
NC_011661  Dtur_1514  histone family protein DNA-binding protein  34.44 
 
 
91 aa  65.5  0.0000000002  Dictyoglomus turgidum DSM 6724  Bacteria  decreased coverage  0.0000108882  n/a   
 
 
-
 
NC_008700  Sama_3158  histone-like DNA-binding protein  35.96 
 
 
90 aa  65.5  0.0000000002  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_010184  BcerKBAB4_2184  histone family protein DNA-binding protein  34.44 
 
 
90 aa  65.5  0.0000000003  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.170143  n/a   
 
 
-
 
NC_010320  Teth514_0687  histone family protein DNA-binding protein  38.82 
 
 
91 aa  65.1  0.0000000003  Thermoanaerobacter sp. X514  Bacteria  normal  0.105584  n/a   
 
 
-
 
NC_007517  Gmet_1417  histone-like DNA-binding protein  37.65 
 
 
91 aa  65.1  0.0000000003  Geobacter metallireducens GS-15  Bacteria  decreased coverage  0.00000053245  normal  0.466182 
 
 
-
 
NC_007912  Sde_2135  hypothetical protein  34.52 
 
 
98 aa  65.1  0.0000000003  Saccharophagus degradans 2-40  Bacteria  hitchhiker  0.00481013  normal 
 
 
-
 
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