More than 300 homologs were found in PanDaTox collection
for query gene Tcr_1180 on replicon NC_007520
Organism: Thiomicrospira crunogena XCL-2



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007520  Tcr_1180  histone-like DNA-binding protein  100 
 
 
90 aa  176  1e-43  Thiomicrospira crunogena XCL-2  Bacteria  unclonable  2.95654e-16  n/a   
 
 
-
 
NC_011662  Tmz1t_2014  histone family protein DNA-binding protein  65.56 
 
 
90 aa  125  3e-28  Thauera sp. MZ1T  Bacteria  decreased coverage  0.000105311  n/a   
 
 
-
 
NC_009831  Ssed_0600  histone family protein DNA-binding protein  64.44 
 
 
90 aa  122  2e-27  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_010506  Swoo_4353  histone family protein DNA-binding protein  63.33 
 
 
90 aa  121  3e-27  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_011312  VSAL_I2846  DNA-binding protein HU-alpha  67.78 
 
 
90 aa  121  3e-27  Aliivibrio salmonicida LFI1238  Bacteria  decreased coverage  0.00368421  n/a   
 
 
-
 
NC_013411  GYMC61_0465  histone family protein DNA-binding protein  62.92 
 
 
90 aa  120  4e-27  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_003910  CPS_2063  HU family DNA-binding protein  63.33 
 
 
91 aa  120  5e-27  Colwellia psychrerythraea 34H  Bacteria  normal  0.832344  n/a   
 
 
-
 
NC_008740  Maqu_1837  histone family protein DNA-binding protein  65.17 
 
 
90 aa  120  7e-27  Marinobacter aquaeolei VT8  Bacteria  hitchhiker  0.00431989  n/a   
 
 
-
 
NC_012793  GWCH70_2154  histone family protein DNA-binding protein  61.8 
 
 
90 aa  119  9.999999999999999e-27  Geobacillus sp. WCH70  Bacteria  hitchhiker  0.000000552537  n/a   
 
 
-
 
NC_012880  Dd703_2873  transcriptional regulator HU subunit beta  62.22 
 
 
90 aa  119  9.999999999999999e-27  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_003910  CPS_1873  HU family DNA-binding protein  63.33 
 
 
91 aa  119  1.9999999999999998e-26  Colwellia psychrerythraea 34H  Bacteria  normal  0.972501  n/a   
 
 
-
 
NC_013456  VEA_002182  DNA-binding protein HU-alpha  66.67 
 
 
90 aa  119  1.9999999999999998e-26  Vibrio sp. Ex25  Bacteria  normal  0.131368  n/a   
 
 
-
 
NC_009901  Spea_3731  histone family protein DNA-binding protein  62.22 
 
 
90 aa  119  1.9999999999999998e-26  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_009783  VIBHAR_00213  DNA-binding protein  66.67 
 
 
101 aa  119  1.9999999999999998e-26  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_007947  Mfla_0016  nucleoid protein HU beta subunit  64.44 
 
 
90 aa  117  3.9999999999999996e-26  Methylobacillus flagellatus KT  Bacteria  normal  normal 
 
 
-
 
NC_007404  Tbd_1674  histone-like DNA-binding protein  62.22 
 
 
90 aa  117  4.9999999999999996e-26  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  normal  0.171237 
 
 
-
 
NC_010180  BcerKBAB4_5693  histone family protein DNA-binding protein  65.17 
 
 
90 aa  117  4.9999999999999996e-26  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.0471576  normal  0.0346696 
 
 
-
 
NC_012034  Athe_0648  histone family protein DNA-binding protein  64.04 
 
 
91 aa  117  4.9999999999999996e-26  Anaerocellum thermophilum DSM 6725  Bacteria  unclonable  0.0000000000417185  n/a   
 
 
-
 
NC_007963  Csal_2043  histone-like DNA-binding protein  64.44 
 
 
90 aa  117  4.9999999999999996e-26  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_010159  YpAngola_A3051  transcriptional regulator HU subunit beta  62.22 
 
 
90 aa  117  6e-26  Yersinia pestis Angola  Bacteria  hitchhiker  0.00488463  normal 
 
 
-
 
NC_010465  YPK_3231  transcriptional regulator HU subunit beta  62.22 
 
 
90 aa  117  6e-26  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_009708  YpsIP31758_3089  transcriptional regulator HU subunit beta  62.22 
 
 
90 aa  117  6e-26  Yersinia pseudotuberculosis IP 31758  Bacteria  unclonable  1.42002e-19  n/a   
 
 
-
 
NC_008709  Ping_3218  DNA-binding protein HU alpha subunit  63.33 
 
 
91 aa  117  6e-26  Psychromonas ingrahamii 37  Bacteria  normal  normal  0.585838 
 
 
-
 
NC_008254  Meso_1172  histone-like DNA-binding protein  62.22 
 
 
90 aa  117  6e-26  Chelativorans sp. BNC1  Bacteria  normal  0.856335  n/a   
 
 
-
 
NC_012912  Dd1591_3065  transcriptional regulator HU subunit beta  60 
 
 
90 aa  117  6e-26  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_007498  Pcar_1686  DNA-binding protein HU-beta, NS1(HU-1)  61.11 
 
 
90 aa  117  7e-26  Pelobacter carbinolicus DSM 2380  Bacteria  hitchhiker  6.460310000000001e-19  n/a   
 
 
-
 
NC_013421  Pecwa_3261  transcriptional regulator HU subunit beta  60 
 
 
90 aa  116  9.999999999999999e-26  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_1051  transcriptional regulator HU subunit beta  60 
 
 
90 aa  116  9.999999999999999e-26  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.593082  n/a   
 
 
-
 
NC_009092  Shew_0430  histone family protein DNA-binding protein  62.22 
 
 
90 aa  116  9.999999999999999e-26  Shewanella loihica PV-4  Bacteria  normal  0.719598  normal 
 
 
-
 
NC_009654  Mmwyl1_1726  histone family protein DNA-binding protein  63.33 
 
 
90 aa  116  9.999999999999999e-26  Marinomonas sp. MWYL1  Bacteria  unclonable  0.00000000326644  hitchhiker  0.00672024 
 
 
-
 
NC_008309  HS_1538  DNA-binding protein HU  63.33 
 
 
91 aa  115  1.9999999999999998e-25  Haemophilus somnus 129PT  Bacteria  unclonable  0.0000000000676058  n/a   
 
 
-
 
NC_009524  PsycPRwf_1626  histone family protein DNA-binding protein  57.78 
 
 
90 aa  115  1.9999999999999998e-25  Psychrobacter sp. PRwf-1  Bacteria  unclonable  0.00000000000133039  hitchhiker  0.00000000638901 
 
 
-
 
NC_008609  Ppro_1181  histone family protein DNA-binding protein  60 
 
 
92 aa  115  1.9999999999999998e-25  Pelobacter propionicus DSM 2379  Bacteria  normal  0.42545  n/a   
 
 
-
 
NC_002977  MCA0532  DNA-binding protein HU-beta  58.89 
 
 
90 aa  115  3e-25  Methylococcus capsulatus str. Bath  Bacteria  decreased coverage  0.00043104  n/a   
 
 
-
 
NC_009436  Ent638_0907  transcriptional regulator HU subunit beta  62.22 
 
 
90 aa  115  3e-25  Enterobacter sp. 638  Bacteria  normal  0.0908162  normal 
 
 
-
 
NC_010184  BcerKBAB4_2184  histone family protein DNA-binding protein  61.8 
 
 
90 aa  114  3.9999999999999997e-25  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.170143  n/a   
 
 
-
 
NC_009656  PSPA7_3493  DNA-binding protein HU  62.22 
 
 
90 aa  114  3.9999999999999997e-25  Pseudomonas aeruginosa PA7  Bacteria  normal  0.175993  n/a   
 
 
-
 
NC_008463  PA14_41210  DNA-binding protein HU  62.22 
 
 
90 aa  114  3.9999999999999997e-25  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.0758892  normal  0.416187 
 
 
-
 
CP001509  ECD_00392  HU, DNA-binding transcriptional regulator, beta subunit  61.11 
 
 
90 aa  114  5e-25  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_3169  histone family protein DNA-binding protein  61.11 
 
 
90 aa  114  5e-25  Escherichia coli DH1  Bacteria  hitchhiker  0.000005828  n/a   
 
 
-
 
NC_012892  B21_00396  hypothetical protein  61.11 
 
 
90 aa  114  5e-25  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_011772  BCG9842_B2983  DNA-binding protein HU  60.67 
 
 
90 aa  114  5e-25  Bacillus cereus G9842  Bacteria  normal  normal 
 
 
-
 
NC_010658  SbBS512_E0363  transcriptional regulator HU subunit beta  61.11 
 
 
90 aa  114  5e-25  Shigella boydii CDC 3083-94  Bacteria  hitchhiker  0.00017145  n/a   
 
 
-
 
NC_009801  EcE24377A_0476  transcriptional regulator HU subunit beta  61.11 
 
 
90 aa  114  5e-25  Escherichia coli E24377A  Bacteria  hitchhiker  0.000220916  n/a   
 
 
-
 
NC_008782  Ajs_2621  histone family protein DNA-binding protein  61.11 
 
 
90 aa  114  5e-25  Acidovorax sp. JS42  Bacteria  normal  0.348082  normal  0.0833374 
 
 
-
 
NC_007484  Noc_1772  histone-like DNA-binding protein  58.89 
 
 
90 aa  114  5e-25  Nitrosococcus oceani ATCC 19707  Bacteria  decreased coverage  0.000757515  n/a   
 
 
-
 
NC_009800  EcHS_A0517  transcriptional regulator HU subunit beta  61.11 
 
 
90 aa  114  5e-25  Escherichia coli HS  Bacteria  hitchhiker  0.0000000000441181  n/a   
 
 
-
 
NC_011353  ECH74115_0526  transcriptional regulator HU subunit beta  61.11 
 
 
90 aa  114  5e-25  Escherichia coli O157:H7 str. EC4115  Bacteria  hitchhiker  0.00026983  normal  0.698185 
 
 
-
 
NC_007969  Pcryo_1653  histone-like DNA-binding protein  57.78 
 
 
90 aa  114  5e-25  Psychrobacter cryohalolentis K5  Bacteria  unclonable  0.00000047794  unclonable  0.0000440637 
 
 
 
NC_010468  EcolC_3192  transcriptional regulator HU subunit beta  61.11 
 
 
90 aa  114  5e-25  Escherichia coli ATCC 8739  Bacteria  normal  0.0216859  hitchhiker  0.00242013 
 
 
-
 
NC_010498  EcSMS35_0483  transcriptional regulator HU subunit beta  61.11 
 
 
90 aa  114  5e-25  Escherichia coli SMS-3-5  Bacteria  hitchhiker  0.000219434  normal 
 
 
-
 
NC_011725  BCB4264_A2342  DNA-binding protein HU  60.67 
 
 
90 aa  114  5e-25  Bacillus cereus B4264  Bacteria  normal  0.868034  n/a   
 
 
-
 
NC_011992  Dtpsy_1187  histone family protein DNA-binding protein  61.11 
 
 
90 aa  114  5e-25  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_011149  SeAg_B0491  transcriptional regulator HU subunit beta  61.11 
 
 
90 aa  114  6e-25  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  0.0126716  n/a   
 
 
-
 
NC_011094  SeSA_A0510  transcriptional regulator HU subunit beta  61.11 
 
 
90 aa  114  6e-25  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  0.0507646  normal 
 
 
-
 
NC_006368  lpp1826  hypothetical protein  64.04 
 
 
92 aa  114  6e-25  Legionella pneumophila str. Paris  Bacteria  n/a    n/a   
 
 
-
 
NC_006369  lpl1822  hypothetical protein  64.04 
 
 
92 aa  114  6e-25  Legionella pneumophila str. Lens  Bacteria  n/a    n/a   
 
 
-
 
NC_011083  SeHA_C0554  transcriptional regulator HU subunit beta  61.11 
 
 
90 aa  114  6e-25  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  hitchhiker  0.00736621  normal 
 
 
-
 
NC_011205  SeD_A0493  transcriptional regulator HU subunit beta  61.11 
 
 
90 aa  114  6e-25  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.107938  normal 
 
 
-
 
NC_011080  SNSL254_A0500  transcriptional regulator HU subunit beta  61.11 
 
 
90 aa  114  6e-25  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  0.332585  normal  0.0268714 
 
 
-
 
NC_009439  Pmen_2053  nucleoid protein HU beta subunit  62.22 
 
 
90 aa  113  6.9999999999999995e-25  Pseudomonas mendocina ymp  Bacteria  hitchhiker  0.000457213  normal  0.0670315 
 
 
-
 
NC_009457  VC0395_A2650  DNA-binding protein HU  64.04 
 
 
90 aa  113  6.9999999999999995e-25  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_003909  BCE_2407  DNA-binding protein HU  60.67 
 
 
90 aa  113  7.999999999999999e-25  Bacillus cereus ATCC 10987  Bacteria  normal  0.020348  n/a   
 
 
-
 
NC_012560  Avin_23600  histone-like DNA-binding protein  62.22 
 
 
90 aa  113  7.999999999999999e-25  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_005945  BAS2213  DNA-binding protein HU  60.67 
 
 
90 aa  113  7.999999999999999e-25  Bacillus anthracis str. Sterne  Bacteria  normal  0.519209  n/a   
 
 
-
 
NC_005957  BT9727_2152  DNA-binding protein HU  60.67 
 
 
90 aa  113  7.999999999999999e-25  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  0.0274093  n/a   
 
 
-
 
NC_006274  BCZK2136  DNA-binding protein HU  60.67 
 
 
90 aa  113  7.999999999999999e-25  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_2395  DNA-binding protein HU  60.67 
 
 
90 aa  113  7.999999999999999e-25  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_007530  GBAA_2377  DNA-binding protein HU  60.67 
 
 
90 aa  113  7.999999999999999e-25  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_009674  Bcer98_1763  histone family protein DNA-binding protein  59.55 
 
 
90 aa  113  7.999999999999999e-25  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  0.203917  n/a   
 
 
-
 
NC_011658  BCAH187_A2477  DNA-binding protein HU  60.67 
 
 
90 aa  113  7.999999999999999e-25  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_009832  Spro_1098  histone family protein DNA-binding protein  60 
 
 
101 aa  113  8.999999999999998e-25  Serratia proteamaculans 568  Bacteria  hitchhiker  0.00970005  hitchhiker  0.00000236625 
 
 
-
 
NC_007954  Sden_0658  histone-like DNA-binding protein  58.89 
 
 
90 aa  113  8.999999999999998e-25  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_011777  BCAH820_B0184  DNA-binding protein HU 1  62.92 
 
 
90 aa  113  1.0000000000000001e-24  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_011655  BCAH187_C0183  DNA-binding protein HU 1  62.92 
 
 
90 aa  112  1.0000000000000001e-24  Bacillus cereus AH187  Bacteria  hitchhiker  0.0000296943  hitchhiker  2.26878e-36 
 
 
-
 
NC_009783  VIBHAR_01420  nucleoid DNA-binding protein  61.11 
 
 
90 aa  113  1.0000000000000001e-24  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_012880  Dd703_3710  transcriptional regulator HU subunit alpha  59.55 
 
 
90 aa  113  1.0000000000000001e-24  Dickeya dadantii Ech703  Bacteria  normal  0.273113  n/a   
 
 
-
 
NC_008345  Sfri_3532  histone family protein DNA-binding protein  58.89 
 
 
90 aa  113  1.0000000000000001e-24  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_009832  Spro_0290  transcriptional regulator HU subunit alpha  58.43 
 
 
90 aa  112  2.0000000000000002e-24  Serratia proteamaculans 568  Bacteria  hitchhiker  0.0031706  hitchhiker  0.00995537 
 
 
-
 
NC_008700  Sama_3158  histone-like DNA-binding protein  56.67 
 
 
90 aa  112  2.0000000000000002e-24  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_007204  Psyc_1474  putative DNA-binding protein HU-beta  56.67 
 
 
90 aa  112  2.0000000000000002e-24  Psychrobacter arcticus 273-4  Bacteria  hitchhiker  0.0000000000000997119  hitchhiker  0.0000985943 
 
 
-
 
NC_013421  Pecwa_0226  transcriptional regulator HU subunit alpha  58.43 
 
 
90 aa  112  2.0000000000000002e-24  Pectobacterium wasabiae WPP163  Bacteria  normal  0.0975648  n/a   
 
 
-
 
NC_009505  BOV_1064  DNA-binding protein HU  61.11 
 
 
91 aa  112  2.0000000000000002e-24  Brucella ovis ATCC 25840  Bacteria  normal  0.203306  n/a   
 
 
-
 
NC_007912  Sde_1611  nucleoid protein HU beta subunit  60 
 
 
90 aa  112  2.0000000000000002e-24  Saccharophagus degradans 2-40  Bacteria  hitchhiker  0.000132089  normal 
 
 
-
 
NC_013456  VEA_004041  DNA-binding protein HU-beta  61.11 
 
 
90 aa  112  2.0000000000000002e-24  Vibrio sp. Ex25  Bacteria  unclonable  0.000000015142  n/a   
 
 
-
 
NC_008340  Mlg_2285  histone family protein DNA-binding protein  57.78 
 
 
90 aa  112  2.0000000000000002e-24  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.0556838  normal 
 
 
-
 
NC_012912  Dd1591_3864  transcriptional regulator HU subunit alpha  58.43 
 
 
90 aa  112  2.0000000000000002e-24  Dickeya zeae Ech1591  Bacteria  normal  0.78216  n/a   
 
 
-
 
NC_012917  PC1_0222  transcriptional regulator HU subunit alpha  58.43 
 
 
90 aa  112  2.0000000000000002e-24  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.390191  n/a   
 
 
-
 
NC_007947  Mfla_1412  histone-like DNA-binding protein  60.67 
 
 
91 aa  111  3e-24  Methylobacillus flagellatus KT  Bacteria  unclonable  0.0000000000277772  normal 
 
 
-
 
NC_008781  Pnap_1633  histone family protein DNA-binding protein  60 
 
 
90 aa  111  3e-24  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal 
 
 
-
 
NC_002976  SERP1041  DNA-binding protein HU  57.3 
 
 
90 aa  111  4.0000000000000004e-24  Staphylococcus epidermidis RP62A  Bacteria  normal  0.436255  n/a   
 
 
-
 
NC_010002  Daci_2879  histone family protein DNA-binding protein  58.89 
 
 
90 aa  111  4.0000000000000004e-24  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_009487  SaurJH9_1530  histone family protein DNA-binding protein  57.3 
 
 
90 aa  111  4.0000000000000004e-24  Staphylococcus aureus subsp. aureus JH9  Bacteria  normal  0.277737  n/a   
 
 
-
 
NC_008321  Shewmr4_0548  histone family protein DNA-binding protein  55.56 
 
 
90 aa  111  4.0000000000000004e-24  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_009632  SaurJH1_1560  histone family protein DNA-binding protein  57.3 
 
 
90 aa  111  4.0000000000000004e-24  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  0.768925  n/a   
 
 
-
 
NC_009667  Oant_2203  histone family protein DNA-binding protein  61.11 
 
 
91 aa  111  4.0000000000000004e-24  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.0471577  n/a   
 
 
-
 
NC_011206  Lferr_1035  histone family protein DNA-binding protein  58.89 
 
 
90 aa  110  5e-24  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  decreased coverage  0.00000557803  hitchhiker  0.00000000462139 
 
 
-
 
NC_009801  EcE24377A_4543  transcriptional regulator HU subunit alpha  58.43 
 
 
90 aa  110  5e-24  Escherichia coli E24377A  Bacteria  normal  0.440082  n/a   
 
 
-
 
NC_009436  Ent638_0213  transcriptional regulator HU subunit alpha  57.3 
 
 
90 aa  110  5e-24  Enterobacter sp. 638  Bacteria  hitchhiker  0.00855152  normal  0.0112419 
 
 
-
 
NC_010658  SbBS512_E4491  transcriptional regulator HU subunit alpha  58.43 
 
 
90 aa  110  5e-24  Shigella boydii CDC 3083-94  Bacteria  normal  0.0852675  n/a   
 
 
-
 
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