More than 300 homologs were found in PanDaTox collection
for query gene PSPA7_3493 on replicon NC_009656
Organism: Pseudomonas aeruginosa PA7



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009656  PSPA7_3493  DNA-binding protein HU  100 
 
 
90 aa  172  9.999999999999999e-43  Pseudomonas aeruginosa PA7  Bacteria  normal  0.175993  n/a   
 
 
-
 
NC_008463  PA14_41210  DNA-binding protein HU  100 
 
 
90 aa  172  9.999999999999999e-43  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.0758892  normal  0.416187 
 
 
-
 
NC_009439  Pmen_2053  nucleoid protein HU beta subunit  98.89 
 
 
90 aa  171  3.9999999999999995e-42  Pseudomonas mendocina ymp  Bacteria  hitchhiker  0.000457213  normal  0.0670315 
 
 
-
 
NC_012560  Avin_23600  histone-like DNA-binding protein  97.78 
 
 
90 aa  169  1e-41  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_002947  PP_2303  histone family protein DNA-binding protein  91.11 
 
 
90 aa  159  9e-39  Pseudomonas putida KT2440  Bacteria  normal  0.0561689  hitchhiker  0.000233767 
 
 
-
 
NC_009512  Pput_3466  histone family protein DNA-binding protein  91.11 
 
 
90 aa  159  9e-39  Pseudomonas putida F1  Bacteria  normal  0.360259  hitchhiker  0.000212777 
 
 
-
 
NC_010501  PputW619_1745  histone family protein DNA-binding protein  91.11 
 
 
90 aa  159  2e-38  Pseudomonas putida W619  Bacteria  normal  0.693876  hitchhiker  0.00044049 
 
 
-
 
NC_010322  PputGB1_1905  histone family protein DNA-binding protein  90 
 
 
90 aa  158  3e-38  Pseudomonas putida GB-1  Bacteria  normal  0.173408  hitchhiker  0.000216257 
 
 
-
 
NC_004578  PSPTO_3723  DNA-binding protein HU-beta  87.78 
 
 
90 aa  152  2e-36  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.612497  n/a   
 
 
-
 
NC_007005  Psyr_1750  histone-like DNA-binding protein  87.78 
 
 
90 aa  152  2e-36  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.519537  normal  0.0235988 
 
 
-
 
NC_007492  Pfl01_3694  nucleoid protein HU beta subunit  87.78 
 
 
90 aa  152  2e-36  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.566059  normal 
 
 
-
 
NC_007963  Csal_2043  histone-like DNA-binding protein  80 
 
 
90 aa  147  5e-35  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_008740  Maqu_1837  histone family protein DNA-binding protein  80.9 
 
 
90 aa  143  9e-34  Marinobacter aquaeolei VT8  Bacteria  hitchhiker  0.00431989  n/a   
 
 
-
 
NC_009436  Ent638_0907  transcriptional regulator HU subunit beta  81.11 
 
 
90 aa  142  1e-33  Enterobacter sp. 638  Bacteria  normal  0.0908162  normal 
 
 
-
 
NC_007912  Sde_1611  nucleoid protein HU beta subunit  83.33 
 
 
90 aa  143  1e-33  Saccharophagus degradans 2-40  Bacteria  hitchhiker  0.000132089  normal 
 
 
-
 
CP001509  ECD_00392  HU, DNA-binding transcriptional regulator, beta subunit  81.11 
 
 
90 aa  142  2e-33  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
NC_010658  SbBS512_E0363  transcriptional regulator HU subunit beta  81.11 
 
 
90 aa  142  2e-33  Shigella boydii CDC 3083-94  Bacteria  hitchhiker  0.00017145  n/a   
 
 
-
 
CP001637  EcDH1_3169  histone family protein DNA-binding protein  81.11 
 
 
90 aa  142  2e-33  Escherichia coli DH1  Bacteria  hitchhiker  0.000005828  n/a   
 
 
-
 
NC_009800  EcHS_A0517  transcriptional regulator HU subunit beta  81.11 
 
 
90 aa  142  2e-33  Escherichia coli HS  Bacteria  hitchhiker  0.0000000000441181  n/a   
 
 
-
 
NC_010498  EcSMS35_0483  transcriptional regulator HU subunit beta  81.11 
 
 
90 aa  142  2e-33  Escherichia coli SMS-3-5  Bacteria  hitchhiker  0.000219434  normal 
 
 
-
 
NC_011353  ECH74115_0526  transcriptional regulator HU subunit beta  81.11 
 
 
90 aa  142  2e-33  Escherichia coli O157:H7 str. EC4115  Bacteria  hitchhiker  0.00026983  normal  0.698185 
 
 
-
 
NC_010468  EcolC_3192  transcriptional regulator HU subunit beta  81.11 
 
 
90 aa  142  2e-33  Escherichia coli ATCC 8739  Bacteria  normal  0.0216859  hitchhiker  0.00242013 
 
 
-
 
NC_009801  EcE24377A_0476  transcriptional regulator HU subunit beta  81.11 
 
 
90 aa  142  2e-33  Escherichia coli E24377A  Bacteria  hitchhiker  0.000220916  n/a   
 
 
-
 
NC_012892  B21_00396  hypothetical protein  81.11 
 
 
90 aa  142  2e-33  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_011080  SNSL254_A0500  transcriptional regulator HU subunit beta  80 
 
 
90 aa  140  6e-33  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  0.332585  normal  0.0268714 
 
 
-
 
NC_011083  SeHA_C0554  transcriptional regulator HU subunit beta  80 
 
 
90 aa  140  6e-33  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  hitchhiker  0.00736621  normal 
 
 
-
 
NC_011149  SeAg_B0491  transcriptional regulator HU subunit beta  80 
 
 
90 aa  140  6e-33  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  0.0126716  n/a   
 
 
-
 
NC_011094  SeSA_A0510  transcriptional regulator HU subunit beta  80 
 
 
90 aa  140  6e-33  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  0.0507646  normal 
 
 
-
 
NC_011205  SeD_A0493  transcriptional regulator HU subunit beta  80 
 
 
90 aa  140  6e-33  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.107938  normal 
 
 
-
 
NC_012880  Dd703_2873  transcriptional regulator HU subunit beta  78.89 
 
 
90 aa  139  9e-33  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_008709  Ping_1468  DNA-binding protein HU beta subunit  76.67 
 
 
91 aa  139  9.999999999999999e-33  Psychromonas ingrahamii 37  Bacteria  normal  0.961834  normal  0.643607 
 
 
-
 
NC_010465  YPK_3231  transcriptional regulator HU subunit beta  77.78 
 
 
90 aa  139  1.9999999999999998e-32  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_012912  Dd1591_3065  transcriptional regulator HU subunit beta  77.78 
 
 
90 aa  139  1.9999999999999998e-32  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_008228  Patl_3133  histone-like DNA-binding protein  73.33 
 
 
90 aa  138  1.9999999999999998e-32  Pseudoalteromonas atlantica T6c  Bacteria  unclonable  0.0000000045924  n/a   
 
 
-
 
NC_009708  YpsIP31758_3089  transcriptional regulator HU subunit beta  77.78 
 
 
90 aa  139  1.9999999999999998e-32  Yersinia pseudotuberculosis IP 31758  Bacteria  unclonable  1.42002e-19  n/a   
 
 
-
 
NC_010159  YpAngola_A3051  transcriptional regulator HU subunit beta  77.78 
 
 
90 aa  139  1.9999999999999998e-32  Yersinia pestis Angola  Bacteria  hitchhiker  0.00488463  normal 
 
 
-
 
NC_009832  Spro_1098  histone family protein DNA-binding protein  77.78 
 
 
101 aa  138  3e-32  Serratia proteamaculans 568  Bacteria  hitchhiker  0.00970005  hitchhiker  0.00000236625 
 
 
-
 
NC_008340  Mlg_2285  histone family protein DNA-binding protein  73.33 
 
 
90 aa  137  4.999999999999999e-32  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.0556838  normal 
 
 
-
 
NC_013421  Pecwa_3261  transcriptional regulator HU subunit beta  76.67 
 
 
90 aa  137  7e-32  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_1051  transcriptional regulator HU subunit beta  76.67 
 
 
90 aa  137  7e-32  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.593082  n/a   
 
 
-
 
NC_009654  Mmwyl1_1726  histone family protein DNA-binding protein  75.56 
 
 
90 aa  135  2e-31  Marinomonas sp. MWYL1  Bacteria  unclonable  0.00000000326644  hitchhiker  0.00672024 
 
 
-
 
NC_011901  Tgr7_0942  histone family protein DNA-binding protein  72.22 
 
 
90 aa  134  3.0000000000000003e-31  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_008577  Shewana3_2658  histone family protein DNA-binding protein  75.56 
 
 
90 aa  134  5e-31  Shewanella sp. ANA-3  Bacteria  unclonable  0.00000000180426  normal  0.730265 
 
 
-
 
NC_009052  Sbal_1607  histone family protein DNA-binding protein  75.56 
 
 
90 aa  134  6.0000000000000005e-31  Shewanella baltica OS155  Bacteria  hitchhiker  0.0000000022491  n/a   
 
 
-
 
NC_004347  SO_1797  HU family DNA-binding protein  75.56 
 
 
90 aa  134  6.0000000000000005e-31  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_011663  Sbal223_2747  histone family protein DNA-binding protein  75.56 
 
 
90 aa  134  6.0000000000000005e-31  Shewanella baltica OS223  Bacteria  decreased coverage  0.00000000276504  normal  0.581764 
 
 
-
 
NC_009665  Shew185_1596  histone family protein DNA-binding protein  75.56 
 
 
90 aa  134  6.0000000000000005e-31  Shewanella baltica OS185  Bacteria  unclonable  0.00000000000169185  n/a   
 
 
-
 
NC_009997  Sbal195_1630  histone family protein DNA-binding protein  75.56 
 
 
90 aa  134  6.0000000000000005e-31  Shewanella baltica OS195  Bacteria  unclonable  0.0000000159632  normal 
 
 
-
 
NC_008321  Shewmr4_2492  histone family protein DNA-binding protein  75.56 
 
 
90 aa  134  6.0000000000000005e-31  Shewanella sp. MR-4  Bacteria  unclonable  0.000000000348442  normal  0.0842071 
 
 
-
 
NC_008322  Shewmr7_2560  histone family protein DNA-binding protein  75.56 
 
 
90 aa  134  6.0000000000000005e-31  Shewanella sp. MR-7  Bacteria  unclonable  0.000000135506  normal  0.0536414 
 
 
-
 
NC_009438  Sputcn32_1493  histone family protein DNA-binding protein  75.56 
 
 
90 aa  134  6.0000000000000005e-31  Shewanella putrefaciens CN-32  Bacteria  hitchhiker  0.00000000388309  n/a   
 
 
-
 
NC_009457  VC0395_A1509  DNA-binding protein HU-beta  71.11 
 
 
90 aa  133  7.000000000000001e-31  Vibrio cholerae O395  Bacteria  hitchhiker  0.0000000000490467  n/a   
 
 
-
 
NC_011312  VSAL_I0822  DNA-binding protein HU-beta  70 
 
 
98 aa  132  1.9999999999999998e-30  Aliivibrio salmonicida LFI1238  Bacteria  normal  0.172487  n/a   
 
 
-
 
NC_010506  Swoo_3110  histone family protein DNA-binding protein  74.44 
 
 
90 aa  131  1.9999999999999998e-30  Shewanella woodyi ATCC 51908  Bacteria  unclonable  0.0000000105676  hitchhiker  0.00000299463 
 
 
-
 
NC_009092  Shew_2505  histone family protein DNA-binding protein  74.44 
 
 
90 aa  132  1.9999999999999998e-30  Shewanella loihica PV-4  Bacteria  hitchhiker  0.0000000791734  normal  0.581146 
 
 
-
 
NC_010717  PXO_02474  DNA-binding protein HU  73.33 
 
 
90 aa  131  3e-30  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  n/a   
 
 
-
 
NC_009831  Ssed_1544  histone family protein DNA-binding protein  74.44 
 
 
90 aa  131  3e-30  Shewanella sediminis HAW-EB3  Bacteria  unclonable  0.000000007734  hitchhiker  0.000745392 
 
 
-
 
NC_009901  Spea_2678  histone family protein DNA-binding protein  74.44 
 
 
90 aa  131  3e-30  Shewanella pealeana ATCC 700345  Bacteria  unclonable  0.0000000000589622  n/a   
 
 
-
 
NC_008345  Sfri_2593  histone family protein DNA-binding protein  74.44 
 
 
91 aa  131  3e-30  Shewanella frigidimarina NCIMB 400  Bacteria  hitchhiker  0.0000000173721  n/a   
 
 
-
 
NC_013456  VEA_004041  DNA-binding protein HU-beta  68.89 
 
 
90 aa  130  5e-30  Vibrio sp. Ex25  Bacteria  unclonable  0.000000015142  n/a   
 
 
-
 
NC_007954  Sden_2492  histone-like DNA-binding protein  73.33 
 
 
90 aa  130  6e-30  Shewanella denitrificans OS217  Bacteria  hitchhiker  0.00401844  n/a   
 
 
-
 
NC_002977  MCA0532  DNA-binding protein HU-beta  73.33 
 
 
90 aa  129  1.0000000000000001e-29  Methylococcus capsulatus str. Bath  Bacteria  decreased coverage  0.00043104  n/a   
 
 
-
 
NC_013093  Amir_0860  histone family protein DNA-binding protein  72.22 
 
 
90 aa  129  2.0000000000000002e-29  Actinosynnema mirum DSM 43827  Bacteria  normal  0.0124999  n/a   
 
 
-
 
NC_003910  CPS_3781  HU family DNA-binding protein  73.33 
 
 
90 aa  129  2.0000000000000002e-29  Colwellia psychrerythraea 34H  Bacteria  hitchhiker  0.0095051  n/a   
 
 
-
 
NC_007484  Noc_1772  histone-like DNA-binding protein  67.78 
 
 
90 aa  128  3e-29  Nitrosococcus oceani ATCC 19707  Bacteria  decreased coverage  0.000757515  n/a   
 
 
-
 
NC_009783  VIBHAR_01420  nucleoid DNA-binding protein  67.78 
 
 
90 aa  128  3e-29  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_007947  Mfla_0016  nucleoid protein HU beta subunit  72.22 
 
 
90 aa  127  4.0000000000000003e-29  Methylobacillus flagellatus KT  Bacteria  normal  normal 
 
 
-
 
NC_013889  TK90_0576  histone family protein DNA-binding protein  71.11 
 
 
90 aa  127  5.0000000000000004e-29  Thioalkalivibrio sp. K90mix  Bacteria  normal  normal  0.0418926 
 
 
-
 
NC_008700  Sama_1227  HU family DNA-binding protein  73.33 
 
 
90 aa  127  6e-29  Shewanella amazonensis SB2B  Bacteria  hitchhiker  0.0000165625  normal 
 
 
-
 
NC_010681  Bphyt_1909  histone family protein DNA-binding protein  71.11 
 
 
90 aa  124  3e-28  Burkholderia phytofirmans PsJN  Bacteria  normal  0.715849  normal 
 
 
-
 
NC_003910  CPS_2063  HU family DNA-binding protein  70 
 
 
91 aa  123  7e-28  Colwellia psychrerythraea 34H  Bacteria  normal  0.832344  n/a   
 
 
-
 
NC_007951  Bxe_A2292  nucleoid protein Hbs  72.22 
 
 
90 aa  123  7e-28  Burkholderia xenovorans LB400  Bacteria  normal  0.337722  normal  0.315371 
 
 
-
 
NC_012560  Avin_43920  histone-like DNA-binding protein  65.56 
 
 
90 aa  123  7e-28  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_010622  Bphy_1014  histone family protein DNA-binding protein  72.22 
 
 
90 aa  123  7e-28  Burkholderia phymatum STM815  Bacteria  normal  0.385833  normal 
 
 
-
 
NC_003910  CPS_1873  HU family DNA-binding protein  70 
 
 
91 aa  123  1e-27  Colwellia psychrerythraea 34H  Bacteria  normal  0.972501  n/a   
 
 
-
 
NC_007404  Tbd_1674  histone-like DNA-binding protein  68.89 
 
 
90 aa  121  2e-27  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  normal  0.171237 
 
 
-
 
NC_009140  SNSL254_pSN254_0022  DNA-binding protein HU  71.11 
 
 
90 aa  122  2e-27  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  hitchhiker  0.00102315  hitchhiker  0.000567997 
 
 
-
 
NC_010577  XfasM23_0470  histone family protein DNA-binding protein  66.29 
 
 
94 aa  121  4e-27  Xylella fastidiosa M23  Bacteria  normal  n/a   
 
 
-
 
NC_008752  Aave_1666  histone family protein DNA-binding protein  68.89 
 
 
90 aa  120  6e-27  Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_008789  Hhal_0600  histone family protein DNA-binding protein  71.11 
 
 
90 aa  120  9e-27  Halorhodospira halophila SL1  Bacteria  normal  0.0791658  n/a   
 
 
-
 
NC_010117  COXBURSA331_A1641  DNA-binding protein HU  65.56 
 
 
94 aa  119  9.999999999999999e-27  Coxiella burnetii RSA 331  Bacteria  unclonable  7.02248e-19  n/a   
 
 
-
 
NC_010002  Daci_2879  histone family protein DNA-binding protein  67.78 
 
 
90 aa  119  9.999999999999999e-27  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_009727  CBUD_0508  DNA-binding protein HU  65.56 
 
 
94 aa  119  9.999999999999999e-27  Coxiella burnetii Dugway 5J108-111  Bacteria  hitchhiker  0.000000377509  n/a   
 
 
-
 
NC_008309  HS_1538  DNA-binding protein HU  63.33 
 
 
91 aa  119  9.999999999999999e-27  Haemophilus somnus 129PT  Bacteria  unclonable  0.0000000000676058  n/a   
 
 
-
 
NC_007517  Gmet_1608  histone-like DNA-binding protein  67.42 
 
 
96 aa  119  1.9999999999999998e-26  Geobacter metallireducens GS-15  Bacteria  unclonable  5.49082e-20  normal 
 
 
-
 
NC_011312  VSAL_I2846  DNA-binding protein HU-alpha  65.56 
 
 
90 aa  118  1.9999999999999998e-26  Aliivibrio salmonicida LFI1238  Bacteria  decreased coverage  0.00368421  n/a   
 
 
-
 
NC_013422  Hneap_0390  histone family protein DNA-binding protein  65.56 
 
 
90 aa  118  3e-26  Halothiobacillus neapolitanus c2  Bacteria  decreased coverage  0.0000165854  n/a   
 
 
-
 
NC_009783  VIBHAR_00213  DNA-binding protein  65.56 
 
 
101 aa  118  3e-26  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_010513  Xfasm12_0532  histone-like protein  65.17 
 
 
94 aa  117  3.9999999999999996e-26  Xylella fastidiosa M12  Bacteria  normal  n/a   
 
 
-
 
NC_008345  Sfri_3532  histone family protein DNA-binding protein  64.44 
 
 
90 aa  117  3.9999999999999996e-26  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_007614  Nmul_A2337  histone-like DNA-binding protein  67.78 
 
 
90 aa  117  6e-26  Nitrosospira multiformis ATCC 25196  Bacteria  unclonable  0.0000000498066  n/a   
 
 
-
 
NC_011992  Dtpsy_1187  histone family protein DNA-binding protein  66.67 
 
 
90 aa  116  7.999999999999999e-26  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_008782  Ajs_2621  histone family protein DNA-binding protein  66.67 
 
 
90 aa  116  7.999999999999999e-26  Acidovorax sp. JS42  Bacteria  normal  0.348082  normal  0.0833374 
 
 
-
 
NC_011146  Gbem_0188  histone family protein DNA-binding protein  65.17 
 
 
94 aa  116  9.999999999999999e-26  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_013456  VEA_002182  DNA-binding protein HU-alpha  64.44 
 
 
90 aa  115  9.999999999999999e-26  Vibrio sp. Ex25  Bacteria  normal  0.131368  n/a   
 
 
-
 
NC_012918  GM21_0170  histone family protein DNA-binding protein  65.17 
 
 
94 aa  116  9.999999999999999e-26  Geobacter sp. M21  Bacteria  n/a    hitchhiker  0.00000201093 
 
 
-
 
NC_008781  Pnap_1633  histone family protein DNA-binding protein  66.67 
 
 
90 aa  115  9.999999999999999e-26  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal 
 
 
-
 
NC_007969  Pcryo_1653  histone-like DNA-binding protein  63.33 
 
 
90 aa  116  9.999999999999999e-26  Psychrobacter cryohalolentis K5  Bacteria  unclonable  0.00000047794  unclonable  0.0000440637 
 
 
 
NC_011071  Smal_0839  histone family protein DNA-binding protein  71.11 
 
 
90 aa  115  1.9999999999999998e-25  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.0237084  normal 
 
 
-
 
NC_008700  Sama_3158  histone-like DNA-binding protein  64.44 
 
 
90 aa  115  1.9999999999999998e-25  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
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