Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SNSL254_pSN254_0022 |
Symbol | hup |
ID | 4929495 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
Kingdom | Bacteria |
Replicon accession | NC_009140 |
Strand | + |
Start bp | 14067 |
End bp | 14339 |
Gene Length | 273 bp |
Protein Length | 90 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 642572326 |
Product | DNA-binding protein HU |
Protein accession | YP_001101901 |
Protein GI | 134047232 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0776] Bacterial nucleoid DNA-binding protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.00102315 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 39 |
Fosmid unclonability p-value | 0.000567997 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAACAAAA GTGAACTGAT TATGAAAGTG GCCGAAGACG CTGACATTAG CAAAGCAAAG GCCGAAGCTG CGGTAAATGC GCTGATCAAC TCAGTGACAG AGGAGCTTAA AGCGGGTGGG ACAGTAGCGC TCACTGGGTT TGGTACTTTC CACGTTAAGG AACGCGCAGC GCGAACCGGG CGGAATCCCC AGACTGGAGA GAACATCCAG ATCGCGGCGG CCAACATTCC TGGGTTCAAA GCTGGTAAGG GGTTGAAAGA CTCCGTGAAC TAG
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Protein sequence | MNKSELIMKV AEDADISKAK AEAAVNALIN SVTEELKAGG TVALTGFGTF HVKERAARTG RNPQTGENIQ IAAANIPGFK AGKGLKDSVN
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